Wall clock time and date at job start Tue Mar 31 2020 06:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99458 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00483 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00392 * 179.97438 * 13 11 10 15 15 H 1.09006 * 109.68290 * 325.52934 * 14 13 11 16 16 C 1.53328 * 109.69179 * 205.00189 * 14 13 11 17 17 C 1.52721 * 108.38639 * 170.34955 * 16 14 13 18 18 C 1.50643 * 110.60004 * 51.03607 * 17 16 14 19 19 C 1.38831 * 117.70096 * 162.50634 * 18 17 16 20 20 C 1.38423 * 120.50735 * 179.73390 * 19 18 17 21 21 O 1.35906 * 120.17227 * 179.97438 * 20 19 18 22 22 C 1.38767 * 119.65374 * 0.02562 * 20 19 18 23 23 C 1.37826 * 119.70755 * 0.09813 * 22 20 19 24 24 C 1.37712 * 122.57030 * 342.43956 * 18 17 16 25 25 C 1.50660 * 122.53876 * 0.48222 * 24 18 17 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 30 30 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 31 31 H 0.97000 * 119.99567 * 0.02562 * 13 11 10 32 32 H 1.09001 * 109.68311 * 290.07865 * 16 14 13 33 33 H 1.09000 * 109.67859 * 50.58795 * 16 14 13 34 34 H 1.09004 * 109.25459 * 171.32658 * 17 16 14 35 35 H 1.09002 * 109.25205 * 290.78714 * 17 16 14 36 36 H 1.08001 * 119.74742 * 359.77986 * 19 18 17 37 37 H 0.96699 * 113.99741 * 270.01701 * 21 20 19 38 38 H 1.07991 * 120.14215 * 180.02562 * 22 20 19 39 39 H 1.08003 * 119.68387 * 180.02562 * 23 22 20 40 40 H 1.08992 * 109.24445 * 222.03558 * 25 24 18 41 41 H 1.09002 * 109.26203 * 102.60882 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4916 -4.9672 -0.0157 12 8 0.2788 -4.9671 -0.0149 13 7 2.1653 -6.1344 -0.0212 14 6 1.4329 -7.4031 -0.0258 15 1 0.5171 -7.3004 0.5565 16 6 2.3082 -8.5072 0.5789 17 6 1.4439 -9.7496 0.7830 18 6 0.7031 -10.0937 -0.4828 19 6 0.1754 -11.3730 -0.5943 20 6 -0.5207 -11.7495 -1.7299 21 8 -1.0339 -13.0038 -1.8321 22 6 -0.6910 -10.8398 -2.7640 23 6 -0.1639 -9.5713 -2.6515 24 6 0.5359 -9.1940 -1.5119 25 6 1.0893 -7.7936 -1.4618 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 2.8718 -3.6005 -0.9002 30 1 2.8717 -3.6084 0.8798 31 1 3.1354 -6.1344 -0.0215 32 1 3.1288 -8.7384 -0.1003 33 1 2.7074 -8.1755 1.5374 34 1 2.0805 -10.5879 1.0660 35 1 0.7243 -9.5600 1.5795 36 1 0.3085 -12.0797 0.2115 37 1 -0.4295 -13.6447 -2.2308 38 1 -1.2331 -11.1250 -3.6533 39 1 -0.2969 -8.8635 -3.4563 40 1 0.3466 -7.0996 -1.8551 41 1 1.9896 -7.7406 -2.0739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589716720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:02 Heat of formation + Delta-G solvation = -82.960558 kcal Electronic energy + Delta-G solvation = -21963.200627 eV Core-core repulsion = 18613.758705 eV Total energy + Delta-G solvation = -3349.441922 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.59057 -39.24886 -37.86436 -35.71044 -33.47634 -33.40323 -32.06672 -30.87505 -29.75758 -28.09311 -25.63949 -23.95112 -22.81741 -22.49194 -21.37953 -20.10856 -19.49998 -18.12665 -16.83982 -16.60618 -16.10504 -15.85854 -15.60339 -15.13957 -14.70778 -14.50755 -14.40031 -13.99482 -13.78355 -13.39892 -13.07036 -13.00187 -12.61750 -12.38261 -12.19012 -12.16325 -11.46184 -11.41051 -11.18987 -11.13493 -10.95362 -10.92203 -10.56945 -10.55277 -9.95260 -9.65642 -9.15971 -9.00795 -8.98938 -8.81629 -8.56183 -8.31826 -5.95764 -4.00048 1.01130 1.09761 3.25345 3.32676 3.34878 3.39389 3.42495 3.49719 3.92610 4.41090 4.47408 4.53900 4.68015 4.81011 4.87053 4.97612 4.99309 5.28842 5.31912 5.35251 5.39247 5.51097 5.55890 5.66459 5.70704 5.72043 5.81603 6.03515 6.10205 6.16166 6.19144 6.24054 6.26002 6.42651 6.62436 6.76925 6.90703 7.37798 7.75329 7.87216 7.90737 8.07935 8.39417 8.79901 9.08994 9.63494 11.15219 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.038682 B = 0.002606 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.668496 B =10741.798495 C =11145.178624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.510 3.490 12 O -0.533 6.533 13 N -0.741 5.741 14 C 0.146 3.854 15 H 0.090 0.910 16 C -0.126 4.126 17 C -0.077 4.077 18 C -0.063 4.063 19 C -0.145 4.145 20 C 0.097 3.903 21 O -0.500 6.500 22 C -0.146 4.146 23 C -0.101 4.101 24 C -0.072 4.072 25 C -0.094 4.094 26 H 0.260 0.740 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.397 0.603 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.126 0.874 37 H 0.387 0.613 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.084 0.916 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.840 -25.808 -2.764 26.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.408 6.408 13 N -0.394 5.394 14 C 0.040 3.960 15 H 0.108 0.892 16 C -0.164 4.164 17 C -0.114 4.114 18 C -0.063 4.063 19 C -0.164 4.164 20 C 0.052 3.948 21 O -0.310 6.310 22 C -0.165 4.165 23 C -0.119 4.119 24 C -0.073 4.073 25 C -0.132 4.132 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.231 0.769 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.144 0.856 37 H 0.243 0.757 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.102 0.898 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.286 -25.406 -2.494 25.885 hybrid contribution 1.196 0.578 -0.352 1.374 sum 5.482 -24.827 -2.847 25.584 Atomic orbital electron populations 1.70012 1.06054 1.26457 1.50303 1.25036 0.94830 0.99253 0.95348 0.86537 0.79991 0.83853 0.77581 1.19763 1.21027 1.21026 1.21266 0.92953 0.91022 1.51213 0.92565 1.18900 0.93191 0.89407 0.98611 1.21867 1.00706 0.91991 1.02454 1.21587 0.88701 0.85694 0.74188 1.90674 1.14464 1.87583 1.48065 1.46252 1.09919 1.05290 1.77910 1.20787 0.96406 0.83172 0.95587 0.89189 1.21834 0.98243 0.94454 1.01888 1.20437 0.98233 0.97990 0.94761 1.19508 0.98316 0.92753 0.95742 1.21372 0.99388 0.97037 0.98573 1.18346 0.96631 0.85765 0.94016 1.84841 1.43906 1.17660 1.84609 1.21334 1.01698 0.94420 0.98998 1.21096 0.97150 0.95905 0.97780 1.19647 0.98399 0.95484 0.93757 1.20916 1.01650 0.92407 0.98207 0.93011 0.95838 0.95843 0.90274 0.90268 0.76906 0.91039 0.90415 0.90218 0.90017 0.85588 0.75739 0.85500 0.85484 0.89758 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.53 13.29 55.43 0.74 -26.79 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.60 5.64 -27.89 -0.16 -2.76 16 11 C 0.51 9.58 7.81 -10.99 -0.09 9.50 16 12 O -0.53 -12.43 15.64 5.55 0.09 -12.34 16 13 N -0.74 -9.89 5.09 -53.78 -0.27 -10.16 16 14 C 0.15 1.78 2.48 -67.90 -0.17 1.61 16 15 H 0.09 1.34 7.53 -51.93 -0.39 0.95 16 16 C -0.13 -1.09 5.46 -26.70 -0.15 -1.24 16 17 C -0.08 -0.64 5.67 -28.05 -0.16 -0.80 16 18 C -0.06 -0.64 5.74 -104.62 -0.60 -1.24 16 19 C -0.15 -1.41 9.55 -39.29 -0.38 -1.79 16 20 C 0.10 0.97 6.70 -39.32 -0.26 0.70 16 21 O -0.50 -4.37 13.51 -19.45 -0.26 -4.63 16 22 C -0.15 -1.46 9.99 -39.54 -0.40 -1.86 16 23 C -0.10 -1.08 9.60 -39.47 -0.38 -1.45 16 24 C -0.07 -0.81 5.74 -104.57 -0.60 -1.41 16 25 C -0.09 -1.11 5.26 -28.04 -0.15 -1.26 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.40 4.05 8.61 -40.82 -0.35 3.70 16 32 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.13 1.01 8.05 -52.49 -0.42 0.59 16 37 H 0.39 1.42 9.06 45.56 0.41 1.83 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.13 1.20 8.05 -52.48 -0.42 0.78 16 40 H 0.08 1.20 8.12 -51.93 -0.42 0.78 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 343.52 15.07 5.18 5.18 Total: -1.00 -35.64 343.52 -8.92 -44.56 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.36 Total: 2.34 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -4.01 Total: -14.81 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.46 Total: -36.96 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.18 Total: -16.97 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.64 -8.92 -44.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589716720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.398 kcal (2) G-P(sol) polarization free energy of solvation -35.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds