Wall clock time and date at job start Tue Mar 31 2020 05:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 120.00169 * 2 1 4 4 N 1.46500 * 109.46997 * 123.37170 * 3 2 1 5 5 C 1.46504 * 119.99851 * 265.05607 * 4 3 2 6 6 C 1.50703 * 109.46841 * 269.99813 * 5 4 3 7 7 H 1.08003 * 119.99922 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99994 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00046 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00144 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46729 * 60.00034 * 10 8 6 12 12 H 1.48494 * 109.47066 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46953 * 300.00341 * 10 8 6 14 14 C 1.34776 * 120.00159 * 85.05377 * 4 3 2 15 15 O 1.21277 * 120.00006 * 4.73305 * 14 4 3 16 16 C 1.50703 * 119.99778 * 184.73525 * 14 4 3 17 17 H 1.08995 * 113.12903 * 24.80701 * 16 14 4 18 18 C 1.52883 * 113.98386 * 157.17224 * 16 14 4 19 19 C 1.50762 * 89.76794 * 114.10094 * 18 16 14 20 20 C 1.38257 * 149.30325 * 179.97438 * 19 18 16 21 21 C 1.38138 * 120.15601 * 179.97438 * 20 19 18 22 22 C 1.38462 * 119.72408 * 0.02562 * 21 20 19 23 23 F 1.35104 * 119.94119 * 180.02562 * 22 21 20 24 24 C 1.38196 * 120.12412 * 359.97217 * 22 21 20 25 25 C 1.38378 * 90.24542 * 0.21706 * 19 18 16 26 26 H 1.07998 * 120.00007 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.99590 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.99694 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47505 * 3.37063 * 3 2 1 30 30 H 1.09004 * 109.47110 * 243.36712 * 3 2 1 31 31 H 1.08999 * 109.47058 * 29.99542 * 5 4 3 32 32 H 1.08999 * 109.47392 * 150.00387 * 5 4 3 33 33 H 0.96994 * 120.00179 * 179.97438 * 9 8 6 34 34 H 1.08993 * 113.16980 * 358.87407 * 18 16 14 35 35 H 1.09009 * 113.22033 * 229.33149 * 18 16 14 36 36 H 1.07996 * 119.92438 * 0.02562 * 20 19 18 37 37 H 1.08002 * 120.14110 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.85249 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9657 1.3480 1.1535 5 6 2.5367 1.9967 2.3951 6 6 2.9209 3.4535 2.3594 7 1 3.4329 3.8560 1.4978 8 6 2.6177 4.2727 3.4262 9 7 1.9938 3.7827 4.4750 10 14 3.0945 6.0784 3.3823 11 1 2.4350 6.7364 2.2258 12 1 2.6596 6.7358 4.6407 13 1 4.5683 6.1979 3.2455 14 6 4.1902 0.7908 1.0725 15 8 4.5783 0.3301 0.0199 16 6 5.0770 0.7403 2.2899 17 1 4.5204 0.7691 3.2266 18 6 6.1457 -0.3516 2.2353 19 6 7.2173 0.7080 2.1919 20 6 8.5578 1.0414 2.1327 21 6 8.9430 2.3679 2.1212 22 6 7.9811 3.3626 2.1698 23 9 8.3529 4.6615 2.1583 24 6 6.6412 3.0294 2.2289 25 6 6.2505 1.6964 2.2465 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5399 0.9354 -0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3569 2.1327 0.0604 30 1 2.6442 1.3894 -0.9187 31 1 1.4550 1.9085 2.4961 32 1 3.0216 1.5139 3.2436 33 1 1.7809 4.3589 5.2257 34 1 6.0993 -0.9520 1.3269 35 1 6.1828 -0.9622 3.1376 36 1 9.3054 0.2630 2.0945 37 1 9.9902 2.6281 2.0754 38 1 5.8945 3.8089 2.2663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590040198.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:54 Heat of formation + Delta-G solvation = 5.176964 kcal Electronic energy + Delta-G solvation = -22855.297835 eV Core-core repulsion = 19386.217538 eV Total energy + Delta-G solvation = -3469.080297 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.61152 -40.68845 -38.57958 -35.66298 -34.65663 -33.47192 -32.19637 -30.53740 -27.83411 -27.37992 -25.97790 -24.18275 -23.01336 -22.01192 -20.60976 -19.66179 -18.31384 -17.14346 -16.72037 -16.47514 -16.20263 -15.62602 -15.30315 -14.84215 -14.72930 -14.53296 -14.32637 -13.90437 -13.36762 -13.18618 -12.89300 -12.53244 -12.25518 -12.18596 -11.83416 -11.61294 -11.38161 -11.31911 -11.03996 -10.95761 -10.84604 -10.68292 -10.35617 -10.20348 -9.83030 -9.42422 -9.08527 -8.66984 -8.53013 -8.19933 -7.83634 -6.23350 -4.30567 1.34254 1.47478 2.50734 3.10937 3.21873 3.27106 3.31209 3.74408 3.97632 4.28542 4.33028 4.42255 4.75776 4.91870 5.09852 5.16511 5.20054 5.38032 5.49961 5.51331 5.60083 5.83315 5.90923 5.93649 5.99224 6.14220 6.21055 6.26687 6.29969 6.37935 6.41000 6.67489 6.87695 6.92987 6.99672 7.11790 7.14005 7.45474 7.71210 7.99466 8.21775 8.71649 8.88874 9.37242 10.83486 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.007706 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.148838 B = 3632.747293 C = 5601.859724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.156 4.156 3 C 0.143 3.857 4 N -0.586 5.586 5 C 0.236 3.764 6 C -0.538 4.538 7 H 0.060 0.940 8 C 0.069 3.931 9 N -0.889 5.889 10 Si 0.889 3.111 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.535 3.465 15 O -0.565 6.565 16 C -0.068 4.068 17 H 0.131 0.869 18 C -0.053 4.053 19 C -0.135 4.135 20 C -0.071 4.071 21 C -0.153 4.153 22 C 0.091 3.909 23 F -0.142 7.142 24 C -0.117 4.117 25 C -0.059 4.059 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.266 0.734 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.135 0.865 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.216 -6.586 -2.805 9.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.175 4.175 3 C 0.021 3.979 4 N -0.315 5.315 5 C 0.117 3.883 6 C -0.577 4.577 7 H 0.078 0.922 8 C -0.134 4.134 9 N -0.527 5.527 10 Si 0.716 3.284 11 H -0.200 1.200 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.323 3.677 15 O -0.446 6.446 16 C -0.089 4.089 17 H 0.148 0.852 18 C -0.090 4.090 19 C -0.136 4.136 20 C -0.089 4.089 21 C -0.172 4.172 22 C 0.072 3.928 23 F -0.121 7.121 24 C -0.136 4.136 25 C -0.060 4.060 26 H 0.111 0.889 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.145 0.855 37 H 0.153 0.847 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.332 -6.677 -3.151 9.726 hybrid contribution 0.146 1.579 0.253 1.606 sum 6.478 -5.098 -2.898 8.737 Atomic orbital electron populations 1.23787 0.95772 1.01596 1.01725 1.23371 0.96065 0.99268 0.98817 1.20431 0.92683 0.94855 0.89980 1.48209 1.13443 1.54179 1.15679 1.19526 0.96634 0.92322 0.79868 1.21411 1.39068 0.93826 1.03347 0.92155 1.24888 0.94688 0.98730 0.95138 1.69893 1.39929 1.36310 1.06604 0.86685 0.79376 0.84738 0.77574 1.20031 1.21015 1.19811 1.19720 0.81733 0.77704 0.88571 1.90597 1.74075 1.49640 1.30254 1.21420 0.93888 0.93571 0.99973 0.85184 1.21485 0.88429 0.95229 1.03828 1.21803 0.93329 0.98398 1.00046 1.19854 0.93883 0.95043 1.00086 1.20908 0.99105 0.92023 1.05155 1.17358 0.92848 0.78141 1.04419 1.91482 1.92046 1.34406 1.94151 1.20728 0.94397 0.97567 1.00879 1.21467 0.95237 0.92073 0.97247 0.88857 0.88423 0.87754 0.89649 0.90293 0.94384 0.94190 0.92393 0.88067 0.88945 0.85525 0.84692 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.65 14.32 29.01 0.42 -2.23 16 2 C -0.16 -2.48 9.81 -36.03 -0.35 -2.83 16 3 C 0.14 2.61 5.84 -5.19 -0.03 2.58 16 4 N -0.59 -11.99 2.45 -176.43 -0.43 -12.42 16 5 C 0.24 5.38 5.02 -5.19 -0.03 5.35 16 6 C -0.54 -13.54 9.39 -34.44 -0.32 -13.86 16 7 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 8 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -23.91 13.29 55.43 0.74 -23.18 16 10 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 14 C 0.54 10.86 7.10 -10.98 -0.08 10.78 16 15 O -0.57 -12.36 15.63 5.56 0.09 -12.27 16 16 C -0.07 -1.23 3.79 -92.62 -0.35 -1.58 16 17 H 0.13 2.34 5.99 -51.93 -0.31 2.03 16 18 C -0.05 -0.78 7.49 -31.54 -0.24 -1.01 16 19 C -0.14 -2.15 7.59 -104.53 -0.79 -2.95 16 20 C -0.07 -0.97 10.03 -39.61 -0.40 -1.37 16 21 C -0.15 -2.18 10.04 -39.54 -0.40 -2.58 16 22 C 0.09 1.58 7.29 -39.51 -0.29 1.29 16 23 F -0.14 -2.50 17.26 2.25 0.04 -2.46 16 24 C -0.12 -2.25 10.02 -39.35 -0.39 -2.65 16 25 C -0.06 -1.11 6.84 -107.58 -0.74 -1.84 16 26 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.10 1.32 7.84 -52.49 -0.41 0.90 16 28 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.09 1.53 7.68 -51.93 -0.40 1.13 16 30 H 0.08 1.46 7.51 -51.93 -0.39 1.07 16 31 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.04 0.93 5.74 -51.93 -0.30 0.63 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.10 1.52 7.28 -51.93 -0.38 1.14 16 35 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 37 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.14 2.98 8.06 -52.49 -0.42 2.55 16 LS Contribution 334.21 15.07 5.04 5.04 Total: -1.00 -28.37 334.21 -8.33 -36.71 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.69 Total: 4.38 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -4.09 Total: -11.22 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.30 Total: -35.60 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.37 -8.33 -36.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590040198.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.882 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds