Wall clock time and date at job start Tue Mar 31 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 120.00169 * 2 1 4 4 N 1.46500 * 109.46997 * 123.37170 * 3 2 1 5 5 C 1.46504 * 119.99851 * 265.05607 * 4 3 2 6 6 C 1.50703 * 109.46841 * 269.99813 * 5 4 3 7 7 H 1.08003 * 119.99922 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99994 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00046 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00144 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46729 * 60.00034 * 10 8 6 12 12 H 1.48494 * 109.47066 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46953 * 300.00341 * 10 8 6 14 14 C 1.34776 * 120.00159 * 85.05377 * 4 3 2 15 15 O 1.21277 * 120.00006 * 4.73305 * 14 4 3 16 16 C 1.50703 * 119.99778 * 184.73525 * 14 4 3 17 17 H 1.08995 * 113.12903 * 24.80701 * 16 14 4 18 18 C 1.52883 * 113.98386 * 157.17224 * 16 14 4 19 19 C 1.50762 * 89.76794 * 114.10094 * 18 16 14 20 20 C 1.38257 * 149.30325 * 179.97438 * 19 18 16 21 21 C 1.38138 * 120.15601 * 179.97438 * 20 19 18 22 22 C 1.38462 * 119.72408 * 0.02562 * 21 20 19 23 23 F 1.35104 * 119.94119 * 180.02562 * 22 21 20 24 24 C 1.38196 * 120.12412 * 359.97217 * 22 21 20 25 25 C 1.38378 * 90.24542 * 0.21706 * 19 18 16 26 26 H 1.07998 * 120.00007 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.99590 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.99694 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47505 * 3.37063 * 3 2 1 30 30 H 1.09004 * 109.47110 * 243.36712 * 3 2 1 31 31 H 1.08999 * 109.47058 * 29.99542 * 5 4 3 32 32 H 1.08999 * 109.47392 * 150.00387 * 5 4 3 33 33 H 0.96994 * 120.00179 * 179.97438 * 9 8 6 34 34 H 1.08993 * 113.16980 * 358.87407 * 18 16 14 35 35 H 1.09009 * 113.22033 * 229.33149 * 18 16 14 36 36 H 1.07996 * 119.92438 * 0.02562 * 20 19 18 37 37 H 1.08002 * 120.14110 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.85249 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9657 1.3480 1.1535 5 6 2.5367 1.9967 2.3951 6 6 2.9209 3.4535 2.3594 7 1 3.4329 3.8560 1.4978 8 6 2.6177 4.2727 3.4262 9 7 1.9938 3.7827 4.4750 10 14 3.0945 6.0784 3.3823 11 1 2.4350 6.7364 2.2258 12 1 2.6596 6.7358 4.6407 13 1 4.5683 6.1979 3.2455 14 6 4.1902 0.7908 1.0725 15 8 4.5783 0.3301 0.0199 16 6 5.0770 0.7403 2.2899 17 1 4.5204 0.7691 3.2266 18 6 6.1457 -0.3516 2.2353 19 6 7.2173 0.7080 2.1919 20 6 8.5578 1.0414 2.1327 21 6 8.9430 2.3679 2.1212 22 6 7.9811 3.3626 2.1698 23 9 8.3529 4.6615 2.1583 24 6 6.6412 3.0294 2.2289 25 6 6.2505 1.6964 2.2465 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5399 0.9354 -0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3569 2.1327 0.0604 30 1 2.6442 1.3894 -0.9187 31 1 1.4550 1.9085 2.4961 32 1 3.0216 1.5139 3.2436 33 1 1.7809 4.3589 5.2257 34 1 6.0993 -0.9520 1.3269 35 1 6.1828 -0.9622 3.1376 36 1 9.3054 0.2630 2.0945 37 1 9.9902 2.6281 2.0754 38 1 5.8945 3.8089 2.2663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590040198.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:53 Heat of formation + Delta-G solvation = -8.066634 kcal Electronic energy + Delta-G solvation = -22855.872121 eV Core-core repulsion = 19386.217538 eV Total energy + Delta-G solvation = -3469.654583 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.95717 -42.06286 -40.07926 -37.22106 -36.02235 -35.12463 -33.89745 -31.80968 -29.47983 -28.93145 -27.35276 -25.62326 -24.80018 -23.33926 -21.91186 -20.93783 -19.84177 -18.78785 -18.24245 -18.14348 -17.63459 -17.11151 -16.67419 -16.42725 -16.22903 -16.09342 -15.70927 -15.19909 -14.68384 -14.56049 -14.41827 -14.13217 -13.79126 -13.64565 -13.50946 -13.03376 -12.98102 -12.81269 -12.64023 -12.48909 -12.26991 -12.16739 -12.08625 -11.75822 -11.56706 -10.99122 -10.64035 -10.33742 -9.91596 -9.54586 -9.47681 -8.25373 -6.37510 0.07649 0.19399 1.26860 1.33958 1.36500 1.41965 1.56342 2.29280 2.40390 2.59529 3.00241 3.05737 3.18598 3.52393 3.62755 3.69197 3.98718 4.07968 4.19198 4.22032 4.36549 4.51103 4.59979 4.69081 4.78067 4.80817 4.85085 4.98174 5.02123 5.06681 5.12222 5.17409 5.20775 5.55331 5.64676 5.66837 5.72470 5.88715 5.90745 6.01853 6.48810 6.75446 7.21426 7.35141 8.80214 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.007706 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.148838 B = 3632.747293 C = 5601.859724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.141 3.859 4 N -0.591 5.591 5 C 0.253 3.747 6 C -0.540 4.540 7 H 0.045 0.955 8 C 0.032 3.968 9 N -0.913 5.913 10 Si 0.938 3.062 11 H -0.271 1.271 12 H -0.277 1.277 13 H -0.278 1.278 14 C 0.532 3.468 15 O -0.583 6.583 16 C -0.079 4.079 17 H 0.123 0.877 18 C -0.035 4.035 19 C -0.128 4.128 20 C -0.058 4.058 21 C -0.135 4.135 22 C 0.073 3.927 23 F -0.150 7.150 24 C -0.147 4.147 25 C -0.098 4.098 26 H 0.121 0.879 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.025 0.975 32 H 0.036 0.964 33 H 0.268 0.732 34 H 0.102 0.898 35 H 0.128 0.872 36 H 0.175 0.825 37 H 0.174 0.826 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.708 -8.017 -2.788 11.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.198 4.198 3 C 0.019 3.981 4 N -0.320 5.320 5 C 0.132 3.868 6 C -0.579 4.579 7 H 0.063 0.937 8 C -0.169 4.169 9 N -0.552 5.552 10 Si 0.763 3.237 11 H -0.196 1.196 12 H -0.202 1.202 13 H -0.204 1.204 14 C 0.321 3.679 15 O -0.466 6.466 16 C -0.100 4.100 17 H 0.140 0.860 18 C -0.072 4.072 19 C -0.128 4.128 20 C -0.076 4.076 21 C -0.154 4.154 22 C 0.054 3.946 23 F -0.128 7.128 24 C -0.166 4.166 25 C -0.099 4.099 26 H 0.139 0.861 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.146 0.854 36 H 0.192 0.808 37 H 0.192 0.808 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.811 -8.107 -3.145 11.689 hybrid contribution -0.329 2.027 0.201 2.064 sum 7.482 -6.079 -2.944 10.080 Atomic orbital electron populations 1.24042 0.94986 1.03086 0.98116 1.23152 0.96698 0.97816 1.02087 1.20509 0.92435 0.96396 0.88800 1.48227 1.14195 1.54058 1.15504 1.19156 0.95499 0.91245 0.80875 1.21534 1.38439 0.95168 1.02744 0.93675 1.25436 0.94754 1.01754 0.94958 1.69957 1.40867 1.37368 1.07048 0.85920 0.78644 0.81266 0.77822 1.19638 1.20205 1.20381 1.20125 0.81636 0.76994 0.89160 1.90566 1.74310 1.50516 1.31160 1.21498 0.94257 0.95850 0.98374 0.85953 1.21440 0.86028 0.94212 1.05511 1.22118 0.93989 0.97479 0.99203 1.20381 0.93826 0.95907 0.97446 1.21361 1.00199 0.91328 1.02485 1.17600 0.92765 0.78650 1.05536 1.91456 1.91959 1.35086 1.94335 1.20662 0.94996 0.97295 1.03641 1.21663 0.96505 0.92431 0.99302 0.86107 0.88044 0.87802 0.90031 0.91179 0.95678 0.94640 0.92248 0.87992 0.85380 0.80807 0.80832 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 14.32 67.78 0.97 -3.34 16 2 C -0.18 -5.63 9.81 25.64 0.25 -5.38 16 3 C 0.14 5.28 5.84 85.63 0.50 5.78 16 4 N -0.59 -25.05 2.45 -830.49 -2.04 -27.08 16 5 C 0.25 11.96 5.02 85.63 0.43 12.39 16 6 C -0.54 -28.26 9.39 25.60 0.24 -28.02 16 7 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 8 C 0.03 1.70 5.46 84.65 0.46 2.16 16 9 N -0.91 -49.98 13.29 21.45 0.28 -49.69 16 10 Si 0.94 42.94 29.54 68.60 2.03 44.96 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 12 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 14 C 0.53 22.14 7.10 87.66 0.62 22.76 16 15 O -0.58 -25.88 15.63 -3.02 -0.05 -25.93 16 16 C -0.08 -2.89 3.79 -12.09 -0.05 -2.94 16 17 H 0.12 4.56 5.99 -2.39 -0.01 4.54 16 18 C -0.04 -0.97 7.49 27.48 0.21 -0.76 16 19 C -0.13 -3.77 7.59 -19.81 -0.15 -3.92 16 20 C -0.06 -1.36 10.03 22.25 0.22 -1.14 16 21 C -0.14 -3.43 10.04 22.30 0.22 -3.20 16 22 C 0.07 2.51 7.29 22.31 0.16 2.67 16 23 F -0.15 -5.27 17.26 44.97 0.78 -4.50 16 24 C -0.15 -5.90 10.02 22.42 0.22 -5.67 16 25 C -0.10 -3.69 6.84 -21.78 -0.15 -3.84 16 26 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 27 H 0.10 2.59 7.84 -2.91 -0.02 2.56 16 28 H 0.10 3.28 8.06 -2.91 -0.02 3.26 16 29 H 0.08 3.04 7.68 -2.39 -0.02 3.02 16 30 H 0.07 2.70 7.51 -2.39 -0.02 2.68 16 31 H 0.03 1.25 8.07 -2.39 -0.02 1.23 16 32 H 0.04 1.72 5.74 -2.39 -0.01 1.71 16 33 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 34 H 0.10 2.85 7.28 -2.39 -0.02 2.83 16 35 H 0.13 2.60 8.14 -2.38 -0.02 2.58 16 36 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 38 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -63.23 334.21 6.24 -56.98 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 1.07 Total: 17.71 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 4.17 Total: -12.46 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -1.75 Total: -76.77 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.05 Total: -25.93 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.78 Total: -4.50 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -63.23 6.24 -56.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590040198.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.915 kcal (2) G-P(sol) polarization free energy of solvation -63.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds