Wall clock time and date at job start Tue Mar 31 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 119.99513 * 2 1 4 4 N 1.46497 * 109.47444 * 124.23910 * 3 2 1 5 5 C 1.46496 * 120.00272 * 89.02634 * 4 3 2 6 6 C 1.50706 * 109.46993 * 85.90088 * 5 4 3 7 7 H 1.07996 * 119.99807 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99686 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00339 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99719 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46874 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.47097 * 120.00122 * 10 8 6 13 13 H 1.48500 * 109.46867 * 240.00401 * 10 8 6 14 14 C 1.34783 * 120.00140 * 269.03214 * 4 3 2 15 15 O 1.21285 * 119.99685 * 5.26280 * 14 4 3 16 16 C 1.50696 * 120.00171 * 185.26508 * 14 4 3 17 17 H 1.09003 * 112.51009 * 323.16493 * 16 14 4 18 18 C 1.52879 * 113.16880 * 193.25029 * 16 14 4 19 19 C 1.51432 * 84.74386 * 244.77962 * 18 16 14 20 20 C 1.38958 * 145.49812 * 179.97438 * 19 18 16 21 21 C 1.37938 * 120.35782 * 180.02562 * 20 19 18 22 22 C 1.38467 * 120.14875 * 0.02589 * 21 20 19 23 23 F 1.35107 * 120.15009 * 180.02562 * 22 21 20 24 24 C 1.38392 * 119.69696 * 0.02562 * 22 21 20 25 25 C 1.38200 * 120.10445 * 359.97380 * 24 22 21 26 26 H 1.08005 * 119.99151 * 185.32148 * 1 2 3 27 27 H 1.07994 * 120.00774 * 5.32250 * 1 2 3 28 28 H 1.07995 * 120.00550 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.47128 * 4.24179 * 3 2 1 30 30 H 1.08999 * 109.47244 * 244.23904 * 3 2 1 31 31 H 1.09000 * 109.47577 * 205.90648 * 5 4 3 32 32 H 1.09003 * 109.46978 * 325.90565 * 5 4 3 33 33 H 0.97001 * 120.00122 * 179.97438 * 9 8 6 34 34 H 1.09006 * 113.98545 * 358.73092 * 18 16 14 35 35 H 1.09001 * 113.98599 * 130.82903 * 18 16 14 36 36 H 1.08006 * 119.82287 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.92335 * 180.02562 * 21 20 19 38 38 H 1.07994 * 119.95154 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9806 1.3397 1.1418 5 6 4.3407 0.8131 1.0050 6 6 5.2431 1.8886 0.4571 7 1 4.8434 2.8667 0.2336 8 6 6.5791 1.6242 0.2421 9 7 7.0659 0.4333 0.5148 10 14 7.6977 2.9575 -0.4363 11 1 6.9117 4.1980 -0.6570 12 1 8.7886 3.2293 0.5338 13 1 8.2819 2.5053 -1.7245 14 6 2.5730 1.8558 2.3183 15 8 1.4199 2.2039 2.4608 16 6 3.5500 2.0005 3.4565 17 1 4.2604 1.1752 3.5041 18 6 2.8737 2.2920 4.7963 19 6 3.5986 3.6190 4.7152 20 6 3.8315 4.8369 5.3425 21 6 4.6635 5.7719 4.7627 22 6 5.2730 5.5028 3.5489 23 9 6.0883 6.4184 2.9812 24 6 5.0432 4.2917 2.9199 25 6 4.2094 3.3556 3.5017 26 1 -0.5399 -0.9314 0.0868 27 1 -0.5401 0.9312 -0.0867 28 1 1.8500 -0.9352 -0.0004 29 1 1.3574 2.1322 0.0760 30 1 2.6318 1.3966 -0.9255 31 1 4.7067 0.4939 1.9808 32 1 4.3341 -0.0376 0.3235 33 1 8.0057 0.2471 0.3632 34 1 1.7885 2.3753 4.7360 35 1 3.2111 1.6518 5.6114 36 1 3.3585 5.0525 6.2893 37 1 4.8399 6.7160 5.2566 38 1 5.5167 4.0773 1.9733 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590040200.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:57 Heat of formation + Delta-G solvation = 5.571787 kcal Electronic energy + Delta-G solvation = -23014.207986 eV Core-core repulsion = 19545.144810 eV Total energy + Delta-G solvation = -3469.063176 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.58485 -40.69945 -38.52118 -35.64022 -34.61294 -33.46558 -32.18805 -30.52241 -27.69765 -27.33228 -26.05948 -24.17132 -23.04143 -21.98217 -20.61189 -19.50915 -18.31362 -17.10965 -16.82718 -16.43588 -16.21247 -15.56790 -15.25402 -14.85851 -14.69941 -14.45457 -14.17144 -13.61607 -13.53538 -13.20591 -13.04616 -12.51288 -12.28065 -12.02097 -11.78478 -11.48906 -11.47629 -11.25727 -11.11830 -11.04216 -10.83846 -10.70519 -10.29509 -10.10044 -9.76951 -9.42835 -9.02093 -8.66531 -8.51612 -8.14632 -7.82338 -6.24129 -4.30674 1.37009 1.51862 2.54172 3.17348 3.18388 3.28520 3.32414 3.79617 3.98795 4.26294 4.30690 4.50960 4.72909 4.97037 5.09322 5.24002 5.27696 5.33357 5.53899 5.55712 5.64344 5.85743 5.94489 5.95187 6.01891 6.15713 6.24608 6.31742 6.32204 6.42674 6.45422 6.66065 6.91521 6.99388 7.09308 7.12131 7.17594 7.43957 7.70109 7.98843 8.24755 8.71969 8.90198 9.36743 10.82835 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010358 B = 0.008368 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.598774 B = 3345.173699 C = 5345.216667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.158 4.158 3 C 0.145 3.855 4 N -0.586 5.586 5 C 0.235 3.765 6 C -0.534 4.534 7 H 0.062 0.938 8 C 0.069 3.931 9 N -0.889 5.889 10 Si 0.884 3.116 11 H -0.269 1.269 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.530 3.470 15 O -0.564 6.564 16 C -0.061 4.061 17 H 0.124 0.876 18 C -0.059 4.059 19 C -0.135 4.135 20 C -0.079 4.079 21 C -0.154 4.154 22 C 0.090 3.910 23 F -0.141 7.141 24 C -0.108 4.108 25 C -0.059 4.059 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.265 0.735 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.133 0.867 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.032 3.068 6.415 9.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.178 4.178 3 C 0.022 3.978 4 N -0.315 5.315 5 C 0.115 3.885 6 C -0.573 4.573 7 H 0.081 0.919 8 C -0.134 4.134 9 N -0.527 5.527 10 Si 0.711 3.289 11 H -0.194 1.194 12 H -0.206 1.206 13 H -0.207 1.207 14 C 0.318 3.682 15 O -0.445 6.445 16 C -0.082 4.082 17 H 0.142 0.858 18 C -0.096 4.096 19 C -0.135 4.135 20 C -0.097 4.097 21 C -0.173 4.173 22 C 0.071 3.929 23 F -0.120 7.120 24 C -0.126 4.126 25 C -0.059 4.059 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.125 0.875 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.115 0.885 36 H 0.142 0.858 37 H 0.151 0.849 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.386 3.182 6.429 9.604 hybrid contribution 1.247 0.773 -0.704 1.628 sum -5.139 3.955 5.725 8.650 Atomic orbital electron populations 1.23717 0.95856 1.01362 1.01588 1.23376 0.96105 0.99344 0.98926 1.20377 0.92546 0.94805 0.90117 1.48171 1.15224 1.58614 1.09503 1.19525 0.75689 0.94914 0.98374 1.21463 0.93427 0.98439 1.43961 0.91941 1.24883 0.97906 0.95499 0.95153 1.69908 1.14612 1.20459 1.47693 0.86649 0.81024 0.82169 0.79066 1.19374 1.20580 1.20703 1.19913 0.87588 0.77013 0.83713 1.90590 1.19254 1.51934 1.82702 1.21317 0.96487 0.96337 0.94010 0.85839 1.21744 1.01236 0.91055 0.95563 1.22472 0.98881 0.95560 0.96576 1.20213 0.97915 0.91871 0.99751 1.20838 1.00230 1.00931 0.95329 1.17381 0.94159 0.87763 0.93585 1.91481 1.70554 1.65155 1.84787 1.20457 0.99125 0.91063 1.02001 1.20751 0.95033 0.95031 0.95122 0.88988 0.88751 0.87496 0.90654 0.89521 0.94201 0.94498 0.92517 0.87299 0.88516 0.85756 0.84946 0.83502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.70 14.31 29.02 0.42 -2.28 16 2 C -0.16 -2.56 9.85 -36.02 -0.35 -2.92 16 3 C 0.14 2.64 5.84 -5.19 -0.03 2.61 16 4 N -0.59 -11.95 2.44 -176.43 -0.43 -12.38 16 5 C 0.23 5.29 5.00 -5.19 -0.03 5.26 16 6 C -0.53 -13.15 8.58 -34.44 -0.30 -13.45 16 7 H 0.06 1.58 7.36 -52.49 -0.39 1.19 16 8 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -23.69 13.29 55.43 0.74 -22.95 16 10 Si 0.88 20.23 29.54 -169.99 -5.02 15.21 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.53 10.73 7.12 -10.98 -0.08 10.66 16 15 O -0.56 -12.25 15.37 5.55 0.09 -12.16 16 16 C -0.06 -1.10 3.37 -96.56 -0.33 -1.42 16 17 H 0.12 2.22 6.22 -51.93 -0.32 1.89 16 18 C -0.06 -0.87 7.90 -27.59 -0.22 -1.09 16 19 C -0.13 -2.16 7.32 -107.55 -0.79 -2.95 16 20 C -0.08 -1.12 10.04 -39.42 -0.40 -1.51 16 21 C -0.15 -2.25 10.01 -39.61 -0.40 -2.64 16 22 C 0.09 1.57 7.31 -39.44 -0.29 1.28 16 23 F -0.14 -2.50 17.27 2.25 0.04 -2.46 16 24 C -0.11 -2.10 10.02 -39.54 -0.40 -2.49 16 25 C -0.06 -1.10 7.05 -104.55 -0.74 -1.83 16 26 H 0.09 1.14 8.06 -52.48 -0.42 0.72 16 27 H 0.09 1.34 7.86 -52.49 -0.41 0.92 16 28 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 29 H 0.08 1.39 7.13 -51.93 -0.37 1.02 16 30 H 0.09 1.57 8.08 -51.93 -0.42 1.15 16 31 H 0.04 0.92 5.87 -51.93 -0.30 0.62 16 32 H 0.04 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 34 H 0.11 1.65 7.09 -51.93 -0.37 1.29 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.15 3.13 6.74 -52.49 -0.35 2.78 16 LS Contribution 331.54 15.07 5.00 5.00 Total: -1.00 -27.96 331.54 -8.21 -36.17 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.61 Total: 4.70 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -4.01 Total: -11.12 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.31 Total: -35.33 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.96 -8.21 -36.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590040200.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.743 kcal (2) G-P(sol) polarization free energy of solvation -27.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds