Wall clock time and date at job start Tue Mar 31 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 119.99513 * 2 1 4 4 N 1.46497 * 109.47444 * 124.23910 * 3 2 1 5 5 C 1.46496 * 120.00272 * 89.02634 * 4 3 2 6 6 C 1.50706 * 109.46993 * 85.90088 * 5 4 3 7 7 H 1.07996 * 119.99807 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99686 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00339 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99719 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46874 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.47097 * 120.00122 * 10 8 6 13 13 H 1.48500 * 109.46867 * 240.00401 * 10 8 6 14 14 C 1.34783 * 120.00140 * 269.03214 * 4 3 2 15 15 O 1.21285 * 119.99685 * 5.26280 * 14 4 3 16 16 C 1.50696 * 120.00171 * 185.26508 * 14 4 3 17 17 H 1.09003 * 112.51009 * 323.16493 * 16 14 4 18 18 C 1.52879 * 113.16880 * 193.25029 * 16 14 4 19 19 C 1.51432 * 84.74386 * 244.77962 * 18 16 14 20 20 C 1.38958 * 145.49812 * 179.97438 * 19 18 16 21 21 C 1.37938 * 120.35782 * 180.02562 * 20 19 18 22 22 C 1.38467 * 120.14875 * 0.02589 * 21 20 19 23 23 F 1.35107 * 120.15009 * 180.02562 * 22 21 20 24 24 C 1.38392 * 119.69696 * 0.02562 * 22 21 20 25 25 C 1.38200 * 120.10445 * 359.97380 * 24 22 21 26 26 H 1.08005 * 119.99151 * 185.32148 * 1 2 3 27 27 H 1.07994 * 120.00774 * 5.32250 * 1 2 3 28 28 H 1.07995 * 120.00550 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.47128 * 4.24179 * 3 2 1 30 30 H 1.08999 * 109.47244 * 244.23904 * 3 2 1 31 31 H 1.09000 * 109.47577 * 205.90648 * 5 4 3 32 32 H 1.09003 * 109.46978 * 325.90565 * 5 4 3 33 33 H 0.97001 * 120.00122 * 179.97438 * 9 8 6 34 34 H 1.09006 * 113.98545 * 358.73092 * 18 16 14 35 35 H 1.09001 * 113.98599 * 130.82903 * 18 16 14 36 36 H 1.08006 * 119.82287 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.92335 * 180.02562 * 21 20 19 38 38 H 1.07994 * 119.95154 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9806 1.3397 1.1418 5 6 4.3407 0.8131 1.0050 6 6 5.2431 1.8886 0.4571 7 1 4.8434 2.8667 0.2336 8 6 6.5791 1.6242 0.2421 9 7 7.0659 0.4333 0.5148 10 14 7.6977 2.9575 -0.4363 11 1 6.9117 4.1980 -0.6570 12 1 8.7886 3.2293 0.5338 13 1 8.2819 2.5053 -1.7245 14 6 2.5730 1.8558 2.3183 15 8 1.4199 2.2039 2.4608 16 6 3.5500 2.0005 3.4565 17 1 4.2604 1.1752 3.5041 18 6 2.8737 2.2920 4.7963 19 6 3.5986 3.6190 4.7152 20 6 3.8315 4.8369 5.3425 21 6 4.6635 5.7719 4.7627 22 6 5.2730 5.5028 3.5489 23 9 6.0883 6.4184 2.9812 24 6 5.0432 4.2917 2.9199 25 6 4.2094 3.3556 3.5017 26 1 -0.5399 -0.9314 0.0868 27 1 -0.5401 0.9312 -0.0867 28 1 1.8500 -0.9352 -0.0004 29 1 1.3574 2.1322 0.0760 30 1 2.6318 1.3966 -0.9255 31 1 4.7067 0.4939 1.9808 32 1 4.3341 -0.0376 0.3235 33 1 8.0057 0.2471 0.3632 34 1 1.7885 2.3753 4.7360 35 1 3.2111 1.6518 5.6114 36 1 3.3585 5.0525 6.2893 37 1 4.8399 6.7160 5.2566 38 1 5.5167 4.0773 1.9733 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590040200.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:57 Heat of formation + Delta-G solvation = -7.253268 kcal Electronic energy + Delta-G solvation = -23014.764122 eV Core-core repulsion = 19545.144810 eV Total energy + Delta-G solvation = -3469.619312 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.122 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.93797 -42.07758 -40.01428 -37.19953 -35.98671 -35.10733 -33.88338 -31.80053 -29.37464 -28.85509 -27.42290 -25.59516 -24.82985 -23.31900 -21.91047 -20.80369 -19.85062 -18.73479 -18.38876 -18.05679 -17.62598 -17.07370 -16.65300 -16.46957 -16.15422 -16.01609 -15.49777 -15.09528 -14.84799 -14.51132 -14.42463 -14.27046 -13.75145 -13.58241 -13.38634 -13.05872 -12.86166 -12.78907 -12.70556 -12.48394 -12.30331 -12.23419 -12.05544 -11.74162 -11.44509 -10.95012 -10.62563 -10.29242 -9.88932 -9.52430 -9.43780 -8.23916 -6.34451 0.09346 0.23565 1.27682 1.31348 1.37266 1.44595 1.62155 2.30892 2.43040 2.60938 2.95541 3.07724 3.27746 3.50833 3.67375 3.74479 4.03513 4.04949 4.22180 4.26356 4.39311 4.53241 4.60119 4.71223 4.78144 4.83946 4.86353 5.01923 5.02536 5.10510 5.16330 5.22037 5.23123 5.61916 5.67664 5.68653 5.75518 5.87026 5.91745 6.03542 6.53348 6.78241 7.23675 7.37516 8.82328 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010358 B = 0.008368 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.598774 B = 3345.173699 C = 5345.216667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.181 4.181 3 C 0.142 3.858 4 N -0.591 5.591 5 C 0.251 3.749 6 C -0.529 4.529 7 H 0.049 0.951 8 C 0.032 3.968 9 N -0.915 5.915 10 Si 0.932 3.068 11 H -0.274 1.274 12 H -0.280 1.280 13 H -0.275 1.275 14 C 0.527 3.473 15 O -0.580 6.580 16 C -0.071 4.071 17 H 0.117 0.883 18 C -0.040 4.040 19 C -0.128 4.128 20 C -0.068 4.068 21 C -0.138 4.138 22 C 0.072 3.928 23 F -0.149 7.149 24 C -0.136 4.136 25 C -0.097 4.097 26 H 0.119 0.881 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.023 0.977 33 H 0.267 0.733 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.170 0.830 37 H 0.170 0.830 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.220 3.797 8.453 11.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.200 4.200 3 C 0.020 3.980 4 N -0.320 5.320 5 C 0.130 3.870 6 C -0.568 4.568 7 H 0.067 0.933 8 C -0.169 4.169 9 N -0.554 5.554 10 Si 0.758 3.242 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.201 1.201 14 C 0.315 3.685 15 O -0.462 6.462 16 C -0.091 4.091 17 H 0.134 0.866 18 C -0.076 4.076 19 C -0.128 4.128 20 C -0.085 4.085 21 C -0.157 4.157 22 C 0.053 3.947 23 F -0.127 7.127 24 C -0.155 4.155 25 C -0.098 4.098 26 H 0.137 0.863 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.150 0.850 36 H 0.188 0.812 37 H 0.188 0.812 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.584 3.913 8.454 12.012 hybrid contribution 1.536 0.583 -1.339 2.120 sum -6.047 4.496 7.115 10.363 Atomic orbital electron populations 1.23954 0.95115 1.02735 0.98260 1.23204 0.96755 0.98085 1.01980 1.20440 0.92234 0.96145 0.89188 1.48189 1.14669 1.58670 1.10441 1.19164 0.76617 0.93795 0.97400 1.21548 0.93828 0.98199 1.43230 0.93269 1.25401 0.98983 0.96865 0.95608 1.69972 1.14935 1.21613 1.48915 0.85899 0.79501 0.80160 0.78630 1.19816 1.20575 1.20070 1.20323 0.87811 0.76285 0.84046 1.90559 1.19949 1.52629 1.83081 1.21465 0.96370 0.96214 0.95072 0.86570 1.21757 1.00792 0.90718 0.94368 1.22715 0.98090 0.96711 0.95329 1.20697 0.96655 0.90319 1.00839 1.21265 0.98476 1.02334 0.93597 1.17615 0.95019 0.87159 0.94889 1.91455 1.70924 1.65183 1.85167 1.20376 1.00673 0.92910 1.01570 1.20908 0.96316 0.95486 0.97060 0.86333 0.88459 0.87422 0.91098 0.90258 0.94766 0.95851 0.92388 0.87308 0.84952 0.81222 0.81244 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.41 14.31 67.78 0.97 -3.44 16 2 C -0.18 -5.82 9.85 25.65 0.25 -5.57 16 3 C 0.14 5.34 5.84 85.63 0.50 5.84 16 4 N -0.59 -24.82 2.44 -830.49 -2.03 -26.85 16 5 C 0.25 11.76 5.00 85.64 0.43 12.19 16 6 C -0.53 -27.11 8.58 25.60 0.22 -26.89 16 7 H 0.05 2.62 7.36 -2.91 -0.02 2.60 16 8 C 0.03 1.68 5.46 84.66 0.46 2.15 16 9 N -0.91 -49.85 13.29 21.45 0.28 -49.57 16 10 Si 0.93 42.69 29.54 68.60 2.03 44.71 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 14 C 0.53 21.58 7.12 87.65 0.62 22.20 16 15 O -0.58 -25.06 15.37 -3.04 -0.05 -25.11 16 16 C -0.07 -2.55 3.37 -14.64 -0.05 -2.59 16 17 H 0.12 4.27 6.22 -2.39 -0.01 4.26 16 18 C -0.04 -1.08 7.90 30.04 0.24 -0.84 16 19 C -0.13 -3.82 7.32 -21.76 -0.16 -3.98 16 20 C -0.07 -1.62 10.04 22.37 0.22 -1.40 16 21 C -0.14 -3.58 10.01 22.25 0.22 -3.36 16 22 C 0.07 2.48 7.31 22.36 0.16 2.65 16 23 F -0.15 -5.26 17.27 44.97 0.78 -4.49 16 24 C -0.14 -5.47 10.02 22.30 0.22 -5.25 16 25 C -0.10 -3.64 7.05 -19.82 -0.14 -3.78 16 26 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 27 H 0.10 2.59 7.86 -2.91 -0.02 2.56 16 28 H 0.11 3.42 8.06 -2.91 -0.02 3.40 16 29 H 0.07 2.68 7.13 -2.38 -0.02 2.67 16 30 H 0.08 3.01 8.08 -2.39 -0.02 2.99 16 31 H 0.03 1.65 5.87 -2.39 -0.01 1.64 16 32 H 0.02 1.16 8.10 -2.39 -0.02 1.14 16 33 H 0.27 13.88 8.31 -92.71 -0.77 13.10 16 34 H 0.11 3.02 7.09 -2.38 -0.02 3.01 16 35 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 37 H 0.17 3.12 8.06 -2.91 -0.02 3.09 16 38 H 0.11 5.17 6.74 -2.91 -0.02 5.15 16 Total: -1.00 -61.75 331.54 6.27 -55.48 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 1.07 Total: 17.89 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 4.18 Total: -12.08 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -1.74 Total: -76.42 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.05 Total: -25.11 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.78 Total: -4.49 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -61.75 6.27 -55.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590040200.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.226 kcal (2) G-P(sol) polarization free energy of solvation -61.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds