Wall clock time and date at job start Tue Mar 31 2020 06:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99756 * 2 1 4 4 H 1.48503 * 109.47034 * 269.99914 * 3 2 1 5 5 H 1.48504 * 109.47037 * 150.00036 * 3 2 1 6 6 H 1.48503 * 109.47200 * 30.00264 * 3 2 1 7 7 C 1.37876 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99451 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00224 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47584 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47584 * 180.02562 * 10 9 7 12 12 O 1.21292 * 120.00133 * 355.02546 * 11 10 9 13 13 N 1.34773 * 120.00322 * 175.02056 * 11 10 9 14 14 C 1.46929 * 120.55387 * 3.36859 * 13 11 10 15 15 C 1.53048 * 108.00826 * 224.53787 * 14 13 11 16 16 H 1.09002 * 109.54536 * 56.88446 * 15 14 13 17 17 C 1.52994 * 109.60639 * 177.13993 * 15 14 13 18 18 O 1.42907 * 109.47419 * 184.51644 * 17 15 14 19 19 C 1.52855 * 108.95805 * 297.02933 * 15 14 13 20 20 C 1.50594 * 110.50078 * 51.31892 * 19 15 14 21 21 C 1.38507 * 118.93275 * 159.40950 * 20 19 15 22 22 C 1.38120 * 120.30408 * 179.54377 * 21 20 19 23 23 C 1.38304 * 120.15112 * 0.07340 * 22 21 20 24 24 C 1.38031 * 119.90989 * 0.09388 * 23 22 21 25 25 C 1.38572 * 121.50136 * 339.25245 * 20 19 15 26 26 H 0.97003 * 120.00077 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47283 * 300.00253 * 9 7 2 28 28 H 1.09004 * 109.46733 * 60.00475 * 9 7 2 29 29 H 1.09000 * 109.47190 * 300.00521 * 10 9 7 30 30 H 1.09004 * 109.46524 * 60.00559 * 10 9 7 31 31 H 1.08999 * 109.79852 * 344.21017 * 14 13 11 32 32 H 1.09007 * 109.79602 * 105.05809 * 14 13 11 33 33 H 1.09000 * 109.47158 * 304.51675 * 17 15 14 34 34 H 1.08997 * 109.47510 * 64.51554 * 17 15 14 35 35 H 0.96693 * 114.00204 * 179.97438 * 18 17 15 36 36 H 1.08998 * 109.27135 * 291.05073 * 19 15 14 37 37 H 1.09002 * 109.26792 * 171.57664 * 19 15 14 38 38 H 1.08000 * 119.84787 * 359.59122 * 21 20 19 39 39 H 1.07996 * 119.92416 * 180.09122 * 22 21 20 40 40 H 1.08003 * 120.04534 * 180.02562 * 23 22 21 41 41 H 1.07998 * 119.98678 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 3.5466 1.4402 0.7001 6 1 1.4465 2.6527 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4920 -4.9671 -0.0025 12 8 0.2825 -4.9693 0.0891 13 7 2.1620 -6.1320 -0.1049 14 6 3.6307 -6.1481 -0.1425 15 6 4.0652 -7.1128 -1.2483 16 1 3.6233 -6.8044 -2.1957 17 6 5.5905 -7.1039 -1.3672 18 8 5.9873 -7.9241 -2.4682 19 6 3.5874 -8.5210 -0.8947 20 6 2.1185 -8.5119 -0.5631 21 6 1.4071 -9.6979 -0.6387 22 6 0.0607 -9.7237 -0.3316 23 6 -0.5867 -8.5634 0.0523 24 6 0.1142 -7.3766 0.1267 25 6 1.4692 -7.3481 -0.1832 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6248 -2.5571 0.8896 28 1 0.6242 -2.5567 -0.8904 29 1 2.8714 -3.6038 -0.8922 30 1 2.8726 -3.6046 0.8878 31 1 4.0055 -5.1474 -0.3579 32 1 4.0208 -6.4906 0.8160 33 1 5.9362 -6.0833 -1.5313 34 1 6.0289 -7.4926 -0.4481 35 1 6.9439 -7.9648 -2.6037 36 1 4.1482 -8.8857 -0.0342 37 1 3.7605 -9.1832 -1.7431 38 1 1.9076 -10.6068 -0.9383 39 1 -0.4878 -10.6522 -0.3912 40 1 -1.6395 -8.5857 0.2924 41 1 -0.3902 -6.4697 0.4260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590405059.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:36 Heat of formation + Delta-G solvation = -64.464340 kcal Electronic energy + Delta-G solvation = -22932.445015 eV Core-core repulsion = 19583.805150 eV Total energy + Delta-G solvation = -3348.639866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.07674 -38.57471 -37.73034 -36.04832 -33.98519 -33.53760 -31.45297 -30.97391 -29.63649 -26.19825 -25.94513 -25.18784 -23.16713 -21.95398 -21.58763 -20.09917 -19.05029 -17.79867 -17.37068 -16.72803 -16.38595 -16.03583 -15.55130 -15.32005 -14.58525 -14.38148 -13.98409 -13.74795 -13.60770 -13.50212 -13.45166 -13.08728 -12.94435 -12.32407 -12.20025 -11.94144 -11.56607 -11.52353 -11.31406 -11.26013 -10.87040 -10.75949 -10.27830 -10.21526 -10.17140 -10.07061 -9.97685 -8.99625 -8.62689 -8.58739 -8.33291 -7.77441 -6.36487 -4.07483 1.38016 1.51960 2.83798 2.92049 3.42238 3.46008 3.61518 3.83516 3.93172 4.34399 4.52605 4.54568 4.79594 4.85183 4.98146 5.02185 5.10775 5.17130 5.23048 5.29952 5.35099 5.41307 5.42935 5.55599 5.65062 5.72718 5.87524 5.94065 5.95960 5.99493 6.21987 6.33774 6.50049 6.63300 6.66259 6.72387 7.27179 7.30171 7.42822 7.46317 7.47794 8.11863 8.38566 8.45310 8.86372 9.66332 11.04496 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.004247 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.241035 B = 6591.334930 C = 8146.260210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 1.073 2.927 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.610 4.610 8 H 0.050 0.950 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.513 3.487 12 O -0.508 6.508 13 N -0.561 5.561 14 C 0.108 3.892 15 C -0.105 4.105 16 H 0.088 0.912 17 C 0.085 3.915 18 O -0.571 6.571 19 C -0.063 4.063 20 C -0.125 4.125 21 C -0.102 4.102 22 C -0.149 4.149 23 C -0.104 4.104 24 C -0.160 4.160 25 C 0.161 3.839 26 H 0.272 0.728 27 H 0.018 0.982 28 H 0.015 0.985 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.380 0.620 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.202 -19.585 -1.083 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.188 4.188 3 Si 0.901 3.099 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.648 4.648 8 H 0.068 0.932 9 C -0.014 4.014 10 C -0.160 4.160 11 C 0.306 3.694 12 O -0.383 6.383 13 N -0.284 5.284 14 C -0.014 4.014 15 C -0.124 4.124 16 H 0.107 0.893 17 C 0.006 3.994 18 O -0.376 6.376 19 C -0.100 4.100 20 C -0.128 4.128 21 C -0.120 4.120 22 C -0.168 4.168 23 C -0.123 4.123 24 C -0.180 4.180 25 C 0.066 3.934 26 H 0.083 0.917 27 H 0.036 0.964 28 H 0.033 0.967 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.227 0.773 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 9.738 -17.895 -1.061 20.400 hybrid contribution 0.906 -1.795 -0.003 2.011 sum 10.645 -19.690 -1.064 22.408 Atomic orbital electron populations 1.70709 1.06930 1.31042 1.45829 1.25845 0.96549 1.02693 0.93727 0.83502 0.74590 0.75101 0.76727 1.21455 1.21493 1.20954 1.22008 0.94168 0.91846 1.56776 0.93179 1.19054 0.93799 0.91057 0.97500 1.21812 1.00603 0.90693 1.02902 1.21830 0.88330 0.85159 0.74112 1.90379 1.14619 1.86011 1.47338 1.45919 1.06933 1.05039 1.70546 1.21813 0.79105 1.01567 0.98965 1.21374 0.94826 0.96208 1.00026 0.89314 1.22083 0.93955 0.94271 0.89050 1.86475 1.28280 1.71269 1.51607 1.20338 0.91277 0.96586 1.01839 1.19473 0.96209 0.92618 1.04480 1.20780 0.94233 0.96550 1.00486 1.21019 0.94754 0.98306 1.02707 1.21142 0.99791 0.92337 0.99022 1.22655 0.93220 1.01340 1.00766 1.17859 0.92044 0.85006 0.98453 0.91686 0.96403 0.96715 0.89762 0.89478 0.88003 0.90459 0.92807 0.93145 0.77273 0.90868 0.89807 0.86203 0.86494 0.86042 0.80619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.38 13.65 55.43 0.76 -27.62 16 2 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 3 Si 1.07 25.08 29.90 -169.99 -5.08 20.00 16 4 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.61 -17.12 9.11 -34.44 -0.31 -17.44 16 8 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16 9 C 0.02 0.61 3.59 -27.89 -0.10 0.51 16 10 C -0.12 -2.39 4.07 -27.89 -0.11 -2.51 16 11 C 0.51 9.97 7.61 -10.99 -0.08 9.89 16 12 O -0.51 -11.47 12.49 5.55 0.07 -11.40 16 13 N -0.56 -8.94 2.98 -113.07 -0.34 -9.28 16 14 C 0.11 1.26 5.55 -3.78 -0.02 1.24 16 15 C -0.11 -1.12 2.58 -90.67 -0.23 -1.36 16 16 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 17 C 0.08 0.67 6.43 37.15 0.24 0.91 16 18 O -0.57 -4.82 13.35 -35.23 -0.47 -5.29 16 19 C -0.06 -0.69 4.89 -28.01 -0.14 -0.82 16 20 C -0.13 -1.69 5.76 -104.45 -0.60 -2.29 16 21 C -0.10 -1.24 9.66 -39.53 -0.38 -1.62 16 22 C -0.15 -1.83 10.04 -39.60 -0.40 -2.23 16 23 C -0.10 -1.47 10.05 -39.63 -0.40 -1.87 16 24 C -0.16 -2.72 8.97 -39.36 -0.35 -3.07 16 25 C 0.16 2.59 6.32 -83.62 -0.53 2.06 16 26 H 0.27 8.62 7.22 -40.82 -0.29 8.32 16 27 H 0.02 0.50 7.91 -51.93 -0.41 0.09 16 28 H 0.01 0.41 8.01 -51.93 -0.42 0.00 16 29 H 0.08 1.53 7.43 -51.93 -0.39 1.14 16 30 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 31 H 0.10 1.10 6.05 -51.93 -0.31 0.79 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.32 8.12 -51.93 -0.42 -0.10 16 35 H 0.38 1.45 9.12 45.56 0.42 1.87 16 36 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.08 0.89 8.02 -51.93 -0.42 0.47 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 41 H 0.18 3.42 4.72 -55.16 -0.26 3.16 16 LS Contribution 332.97 15.07 5.02 5.02 Total: -1.00 -34.78 332.97 -8.66 -43.44 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.09 Total: 3.34 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -3.52 Total: -18.21 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.42 Total: -36.90 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.40 Total: -16.69 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.78 -8.66 -43.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590405059.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.025 kcal (2) G-P(sol) polarization free energy of solvation -34.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds