Wall clock time and date at job start Tue Mar 31 2020 06:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99756 * 2 1 4 4 H 1.48503 * 109.47034 * 269.99914 * 3 2 1 5 5 H 1.48504 * 109.47037 * 150.00036 * 3 2 1 6 6 H 1.48503 * 109.47200 * 30.00264 * 3 2 1 7 7 C 1.37876 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99451 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00224 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47584 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47584 * 180.02562 * 10 9 7 12 12 O 1.21292 * 120.00133 * 355.02546 * 11 10 9 13 13 N 1.34773 * 120.00322 * 175.02056 * 11 10 9 14 14 C 1.46929 * 120.55387 * 3.36859 * 13 11 10 15 15 C 1.53048 * 108.00826 * 224.53787 * 14 13 11 16 16 H 1.09002 * 109.54536 * 56.88446 * 15 14 13 17 17 C 1.52994 * 109.60639 * 177.13993 * 15 14 13 18 18 O 1.42907 * 109.47419 * 184.51644 * 17 15 14 19 19 C 1.52855 * 108.95805 * 297.02933 * 15 14 13 20 20 C 1.50594 * 110.50078 * 51.31892 * 19 15 14 21 21 C 1.38507 * 118.93275 * 159.40950 * 20 19 15 22 22 C 1.38120 * 120.30408 * 179.54377 * 21 20 19 23 23 C 1.38304 * 120.15112 * 0.07340 * 22 21 20 24 24 C 1.38031 * 119.90989 * 0.09388 * 23 22 21 25 25 C 1.38572 * 121.50136 * 339.25245 * 20 19 15 26 26 H 0.97003 * 120.00077 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47283 * 300.00253 * 9 7 2 28 28 H 1.09004 * 109.46733 * 60.00475 * 9 7 2 29 29 H 1.09000 * 109.47190 * 300.00521 * 10 9 7 30 30 H 1.09004 * 109.46524 * 60.00559 * 10 9 7 31 31 H 1.08999 * 109.79852 * 344.21017 * 14 13 11 32 32 H 1.09007 * 109.79602 * 105.05809 * 14 13 11 33 33 H 1.09000 * 109.47158 * 304.51675 * 17 15 14 34 34 H 1.08997 * 109.47510 * 64.51554 * 17 15 14 35 35 H 0.96693 * 114.00204 * 179.97438 * 18 17 15 36 36 H 1.08998 * 109.27135 * 291.05073 * 19 15 14 37 37 H 1.09002 * 109.26792 * 171.57664 * 19 15 14 38 38 H 1.08000 * 119.84787 * 359.59122 * 21 20 19 39 39 H 1.07996 * 119.92416 * 180.09122 * 22 21 20 40 40 H 1.08003 * 120.04534 * 180.02562 * 23 22 21 41 41 H 1.07998 * 119.98678 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 3.5466 1.4402 0.7001 6 1 1.4465 2.6527 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4920 -4.9671 -0.0025 12 8 0.2825 -4.9693 0.0891 13 7 2.1620 -6.1320 -0.1049 14 6 3.6307 -6.1481 -0.1425 15 6 4.0652 -7.1128 -1.2483 16 1 3.6233 -6.8044 -2.1957 17 6 5.5905 -7.1039 -1.3672 18 8 5.9873 -7.9241 -2.4682 19 6 3.5874 -8.5210 -0.8947 20 6 2.1185 -8.5119 -0.5631 21 6 1.4071 -9.6979 -0.6387 22 6 0.0607 -9.7237 -0.3316 23 6 -0.5867 -8.5634 0.0523 24 6 0.1142 -7.3766 0.1267 25 6 1.4692 -7.3481 -0.1832 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6248 -2.5571 0.8896 28 1 0.6242 -2.5567 -0.8904 29 1 2.8714 -3.6038 -0.8922 30 1 2.8726 -3.6046 0.8878 31 1 4.0055 -5.1474 -0.3579 32 1 4.0208 -6.4906 0.8160 33 1 5.9362 -6.0833 -1.5313 34 1 6.0289 -7.4926 -0.4481 35 1 6.9439 -7.9648 -2.6037 36 1 4.1482 -8.8857 -0.0342 37 1 3.7605 -9.1832 -1.7431 38 1 1.9076 -10.6068 -0.9383 39 1 -0.4878 -10.6522 -0.3912 40 1 -1.6395 -8.5857 0.2924 41 1 -0.3902 -6.4697 0.4260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590405059.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:35 Heat of formation + Delta-G solvation = -88.409902 kcal Electronic energy + Delta-G solvation = -22933.483373 eV Core-core repulsion = 19583.805150 eV Total energy + Delta-G solvation = -3349.678223 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.29162 -39.86935 -38.52852 -36.99812 -36.05319 -34.61051 -33.20411 -31.99819 -30.93948 -27.62491 -26.84282 -26.61117 -24.73653 -23.36158 -22.73895 -21.27995 -20.21287 -19.14253 -18.57996 -18.09601 -17.65848 -17.14620 -16.88622 -16.29502 -15.95070 -15.61869 -15.21555 -15.06309 -14.97922 -14.75136 -14.43923 -14.25075 -14.05254 -13.87049 -13.66091 -13.55575 -12.88432 -12.70658 -12.49286 -12.30715 -12.21991 -12.12200 -11.99040 -11.85251 -11.58447 -11.18763 -10.82649 -10.79808 -10.56875 -10.39506 -9.69354 -8.93460 -8.70395 -6.42785 0.26087 0.41269 1.46192 1.54304 1.64934 1.66542 1.81459 2.58931 2.81097 3.16432 3.19599 3.38004 3.65517 3.69669 3.98637 4.11630 4.13799 4.16086 4.23739 4.26359 4.30571 4.42702 4.47889 4.53434 4.55688 4.67477 4.71563 4.79882 4.86584 4.98469 5.16901 5.21315 5.23113 5.27698 5.30800 5.45872 5.57545 5.61500 5.90356 6.10859 6.15102 6.23692 6.49424 6.95023 6.98204 7.43462 8.69544 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.004247 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.241035 B = 6591.334930 C = 8146.260210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.045 4.045 3 Si 1.127 2.873 4 H -0.272 1.272 5 H -0.258 1.258 6 H -0.288 1.288 7 C -0.617 4.617 8 H 0.070 0.930 9 C 0.027 3.973 10 C -0.106 4.106 11 C 0.507 3.493 12 O -0.556 6.556 13 N -0.554 5.554 14 C 0.099 3.901 15 C -0.102 4.102 16 H 0.061 0.939 17 C 0.090 3.910 18 O -0.591 6.591 19 C -0.059 4.059 20 C -0.123 4.123 21 C -0.100 4.100 22 C -0.141 4.141 23 C -0.115 4.115 24 C -0.194 4.194 25 C 0.131 3.869 26 H 0.251 0.749 27 H -0.018 1.018 28 H -0.022 1.022 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.400 0.600 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.132 0.868 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.972 -21.500 -1.315 26.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.241 4.241 3 Si 0.946 3.054 4 H -0.197 1.197 5 H -0.182 1.182 6 H -0.214 1.214 7 C -0.654 4.654 8 H 0.089 0.911 9 C -0.011 4.011 10 C -0.146 4.146 11 C 0.300 3.700 12 O -0.435 6.435 13 N -0.276 5.276 14 C -0.022 4.022 15 C -0.121 4.121 16 H 0.080 0.920 17 C 0.012 3.988 18 O -0.400 6.400 19 C -0.096 4.096 20 C -0.126 4.126 21 C -0.118 4.118 22 C -0.159 4.159 23 C -0.134 4.134 24 C -0.214 4.214 25 C 0.037 3.963 26 H 0.061 0.939 27 H 0.001 0.999 28 H -0.004 1.004 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.251 0.749 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.174 0.826 39 H 0.169 0.831 40 H 0.150 0.850 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 13.576 -19.876 -1.303 24.105 hybrid contribution -0.291 -1.364 0.046 1.395 sum 13.285 -21.240 -1.257 25.084 Atomic orbital electron populations 1.70871 1.08445 1.29752 1.48706 1.27658 0.96463 1.07448 0.92547 0.82849 0.74344 0.70318 0.77844 1.19748 1.18205 1.21368 1.22477 0.95288 0.92385 1.55276 0.91142 1.18879 0.94319 0.93759 0.94107 1.21575 0.99154 0.88750 1.05092 1.21683 0.87770 0.86244 0.74329 1.90407 1.16504 1.86856 1.49734 1.45836 1.08646 1.04001 1.69116 1.22188 0.76360 1.02820 1.00831 1.21319 0.97008 0.95694 0.98087 0.92006 1.22021 0.91614 0.95082 0.90065 1.86414 1.30402 1.71321 1.51847 1.20403 0.89425 0.96833 1.02960 1.19868 0.97854 0.91847 1.02990 1.21264 0.94218 0.97311 0.99026 1.21416 0.95206 0.98602 1.00694 1.21333 1.00485 0.92252 0.99319 1.22477 0.94455 1.01307 1.03157 1.18080 0.92031 0.85845 1.00367 0.93948 0.99943 1.00390 0.87485 0.87066 0.87090 0.88013 0.91909 0.90717 0.74940 0.88559 0.89065 0.82626 0.83148 0.84972 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.18 13.65 21.45 0.29 -60.89 16 2 C -0.04 -2.62 5.46 84.66 0.46 -2.15 16 3 Si 1.13 49.83 29.90 68.60 2.05 51.88 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 6 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 7 C -0.62 -34.99 9.11 25.60 0.23 -34.76 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.03 1.49 3.59 29.84 0.11 1.59 16 10 C -0.11 -4.29 4.07 29.84 0.12 -4.17 16 11 C 0.51 20.74 7.61 87.66 0.67 21.41 16 12 O -0.56 -27.53 12.49 -3.07 -0.04 -27.57 16 13 N -0.55 -17.83 2.98 -630.03 -1.87 -19.70 16 14 C 0.10 2.11 5.55 86.31 0.48 2.59 16 15 C -0.10 -1.92 2.58 -10.83 -0.03 -1.95 16 16 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 17 C 0.09 1.10 6.43 71.98 0.46 1.56 16 18 O -0.59 -7.95 13.35 -148.98 -1.99 -9.94 16 19 C -0.06 -1.09 4.89 29.77 0.15 -0.94 16 20 C -0.12 -3.08 5.76 -19.75 -0.11 -3.19 16 21 C -0.10 -2.12 9.66 22.31 0.22 -1.91 16 22 C -0.14 -3.15 10.04 22.26 0.22 -2.92 16 23 C -0.12 -3.30 10.05 22.24 0.22 -3.07 16 24 C -0.19 -7.00 8.97 22.41 0.20 -6.80 16 25 C 0.13 4.26 6.32 38.08 0.24 4.50 16 26 H 0.25 17.04 7.22 -92.71 -0.67 16.37 16 27 H -0.02 -1.09 7.91 -2.39 -0.02 -1.11 16 28 H -0.02 -1.37 8.01 -2.38 -0.02 -1.39 16 29 H 0.11 3.79 7.43 -2.39 -0.02 3.78 16 30 H 0.11 3.91 8.14 -2.38 -0.02 3.89 16 31 H 0.11 2.13 6.05 -2.39 -0.01 2.12 16 32 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.58 8.12 -2.39 -0.02 0.56 16 35 H 0.40 1.64 9.12 -74.06 -0.68 0.96 16 36 H 0.10 1.37 8.10 -2.39 -0.02 1.35 16 37 H 0.09 1.59 8.02 -2.39 -0.02 1.57 16 38 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 40 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16 41 H 0.14 6.12 4.72 -45.29 -0.21 5.90 16 Total: -1.00 -81.64 332.97 2.35 -79.30 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.26 Total: 17.13 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 3.64 Total: -30.21 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -1.58 Total: -80.59 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -2.03 Total: -37.51 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.05 Total: 51.88 kcal Total: -81.64 2.35 -79.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590405059.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.112 kcal (2) G-P(sol) polarization free energy of solvation -81.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds