Wall clock time and date at job start Tue Mar 31 2020 06:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47346 * 2 1 4 4 C 1.50704 * 109.46996 * 239.99533 * 2 1 3 5 5 H 1.07995 * 120.00104 * 234.80923 * 4 2 1 6 6 C 1.37873 * 119.99697 * 54.81156 * 4 2 1 7 7 N 1.31515 * 120.00011 * 199.07802 * 6 4 2 8 8 Si 1.86800 * 120.00205 * 19.07576 * 6 4 2 9 9 H 1.48505 * 109.47274 * 84.99016 * 8 6 4 10 10 H 1.48500 * 109.47500 * 204.99047 * 8 6 4 11 11 H 1.48501 * 109.47397 * 324.99062 * 8 6 4 12 12 C 1.53005 * 109.46733 * 120.00326 * 2 1 3 13 13 N 1.46508 * 109.46663 * 299.99690 * 12 2 1 14 14 C 1.30724 * 119.99810 * 114.85194 * 13 12 2 15 15 N 1.38359 * 121.44637 * 354.13735 * 14 13 12 16 16 H 0.97001 * 119.95444 * 0.02562 * 15 14 13 17 17 C 1.36103 * 120.09405 * 179.97438 * 15 14 13 18 18 N 1.29646 * 123.36853 * 359.97438 * 17 15 14 19 19 C 1.35926 * 122.16406 * 0.02562 * 18 17 15 20 20 C 1.39576 * 121.39534 * 180.02562 * 19 18 17 21 21 C 1.37747 * 119.76060 * 179.97438 * 20 19 18 22 22 C 1.38946 * 120.75197 * 359.96213 * 21 20 19 23 23 F 1.35102 * 119.78314 * 180.02562 * 22 21 20 24 24 C 1.38146 * 120.42818 * 0.03644 * 22 21 20 25 25 C 1.39044 * 119.52920 * 359.97438 * 24 22 21 26 26 H 1.09005 * 109.46908 * 307.73672 * 1 2 3 27 27 H 1.09008 * 109.46784 * 67.72768 * 1 2 3 28 28 H 1.08993 * 109.47527 * 187.73050 * 1 2 3 29 29 H 1.09000 * 109.46942 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47252 * 299.99333 * 3 2 1 31 31 H 1.09000 * 109.47556 * 60.00303 * 3 2 1 32 32 H 0.96996 * 119.99950 * 180.02562 * 7 6 4 33 33 H 1.08993 * 109.47000 * 179.97438 * 12 2 1 34 34 H 1.08997 * 109.47130 * 59.99236 * 12 2 1 35 35 H 1.08001 * 118.31498 * 179.97438 * 17 15 14 36 36 H 1.08001 * 120.11663 * 359.97438 * 20 19 18 37 37 H 1.08001 * 119.62286 * 179.97438 * 21 20 19 38 38 H 1.08003 * 120.23305 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.7205 -1.5372 -1.1335 6 6 1.6133 -0.3051 -2.4798 7 7 1.7298 -1.1170 -3.5079 8 14 0.8802 1.3972 -2.7124 9 1 1.9722 2.3830 -2.9150 10 1 -0.0108 1.3944 -3.9003 11 1 0.0965 1.7676 -1.5067 12 6 2.0399 -0.7214 1.2493 13 7 1.5515 -0.0306 2.4454 14 6 0.7191 -0.6328 3.2538 15 7 0.1868 -1.8730 2.9491 16 1 0.4304 -2.3143 2.1203 17 6 -0.6773 -2.4752 3.8111 18 7 -1.0466 -1.9469 4.9359 19 6 -0.5942 -0.7333 5.3484 20 6 -1.0021 -0.1797 6.5630 21 6 -0.5220 1.0526 6.9483 22 6 0.3661 1.7530 6.1414 23 9 0.8251 2.9600 6.5387 24 6 0.7826 1.2234 4.9354 25 6 0.3071 -0.0193 4.5319 26 1 -0.3633 0.6290 0.8128 27 1 -0.3633 0.3895 -0.9511 28 1 -0.3634 -1.0182 0.1382 29 1 3.1300 1.4423 0.0005 30 1 1.6769 1.9562 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.4353 -0.8316 -4.3870 33 1 3.1299 -0.7218 1.2491 34 1 1.6765 -1.7489 1.2493 35 1 -1.0758 -3.4430 3.5443 36 1 -1.6915 -0.7157 7.1985 37 1 -0.8394 1.4790 7.8884 38 1 1.4734 1.7705 4.3108 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591176525.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:46 Heat of formation + Delta-G solvation = 42.126122 kcal Electronic energy + Delta-G solvation = -22704.429373 eV Core-core repulsion = 19269.244063 eV Total energy + Delta-G solvation = -3435.185310 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.90152 -40.90291 -37.99669 -36.87978 -34.90658 -32.43960 -31.88793 -30.99878 -29.35047 -26.36961 -26.26131 -24.96373 -24.15446 -23.67493 -21.41788 -19.64995 -18.93007 -18.37432 -17.76880 -16.31970 -16.18872 -15.74863 -15.69427 -15.40201 -14.85332 -14.80369 -14.22909 -13.87333 -13.42960 -13.25528 -13.21783 -12.85672 -12.73959 -12.32627 -12.19755 -11.90547 -11.71921 -11.55830 -11.16542 -10.64275 -10.39514 -10.16180 -10.07221 -9.89644 -9.61290 -9.32267 -9.04362 -8.92684 -8.61777 -8.38632 -7.45078 -6.21756 -4.15401 0.50339 0.78057 2.22718 2.66202 2.90374 3.24994 3.35699 3.37783 3.91531 3.94402 4.08315 4.23194 4.35079 4.59367 4.82332 4.98467 5.05128 5.11918 5.47077 5.53214 5.70913 5.75953 5.91147 5.93609 6.00526 6.12444 6.17221 6.34085 6.41746 6.56171 6.59736 6.70014 6.74928 6.84097 6.90769 7.01547 7.25141 7.42726 7.71066 7.91724 8.19062 8.40219 8.83467 9.46350 10.91066 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.022312 B = 0.004565 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.613359 B = 6131.929347 C = 6912.877086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.047 3.953 3 C -0.135 4.135 4 C -0.522 4.522 5 H 0.072 0.928 6 C 0.081 3.919 7 N -0.888 5.888 8 Si 0.872 3.128 9 H -0.284 1.284 10 H -0.303 1.303 11 H -0.244 1.244 12 C 0.071 3.929 13 N -0.530 5.530 14 C 0.378 3.622 15 N -0.677 5.677 16 H 0.422 0.578 17 C 0.393 3.607 18 N -0.555 5.555 19 C 0.136 3.864 20 C -0.087 4.087 21 C -0.122 4.122 22 C 0.072 3.928 23 F -0.139 7.139 24 C -0.083 4.083 25 C -0.077 4.077 26 H 0.025 0.975 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.040 0.960 32 H 0.264 0.736 33 H 0.084 0.916 34 H 0.029 0.971 35 H 0.196 0.804 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.722 -0.418 18.501 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.046 3.954 3 C -0.192 4.192 4 C -0.559 4.559 5 H 0.090 0.910 6 C -0.122 4.122 7 N -0.524 5.524 8 Si 0.704 3.296 9 H -0.211 1.211 10 H -0.232 1.232 11 H -0.170 1.170 12 C -0.058 4.058 13 N -0.251 5.251 14 C 0.104 3.896 15 N -0.311 5.311 16 H 0.264 0.736 17 C 0.102 3.898 18 N -0.278 5.278 19 C 0.027 3.973 20 C -0.107 4.107 21 C -0.143 4.143 22 C 0.052 3.948 23 F -0.118 7.118 24 C -0.104 4.104 25 C -0.082 4.082 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.047 0.953 35 H 0.212 0.788 36 H 0.161 0.839 37 H 0.157 0.843 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.705 0.197 18.777 19.625 hybrid contribution 0.137 0.524 -1.496 1.591 sum -5.569 0.721 17.281 18.170 Atomic orbital electron populations 1.22316 0.98290 0.98919 1.00295 1.18473 0.91882 0.92748 0.92304 1.22139 1.00414 0.97974 0.98723 1.20772 1.29243 1.17286 0.88637 0.90954 1.24912 0.94543 0.96826 0.95962 1.69999 1.46949 1.34681 1.00779 0.87547 0.79426 0.85959 0.76692 1.21118 1.23171 1.16988 1.22149 1.00027 0.94710 0.88924 1.72790 1.13865 1.31011 1.07424 1.20854 0.93178 0.82122 0.93428 1.44339 1.43296 1.19749 1.23756 0.73642 1.24572 0.84366 0.96271 0.84604 1.68514 1.30558 1.12982 1.15758 1.18637 0.93626 0.90623 0.94386 1.20562 1.00635 0.94545 0.94919 1.21112 0.97495 0.95308 1.00359 1.17541 0.99274 0.82856 0.95130 1.91500 1.87615 1.41989 1.90689 1.20966 0.99815 0.94788 0.94812 1.18766 1.00668 0.95954 0.92859 0.95628 0.92484 0.94630 0.93478 0.94759 0.94145 0.92587 0.89819 0.95254 0.78795 0.83881 0.84262 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 7.52 37.16 0.28 -2.75 16 2 C 0.05 1.06 0.57 -155.66 -0.09 0.97 16 3 C -0.14 -3.00 7.69 37.15 0.29 -2.71 16 4 C -0.52 -13.82 8.61 -34.44 -0.30 -14.11 16 5 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 6 C 0.08 2.24 5.25 -17.82 -0.09 2.15 16 7 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 8 Si 0.87 21.45 22.95 -169.99 -3.90 17.55 16 9 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 11 H -0.24 -5.67 4.56 56.52 0.26 -5.41 16 12 C 0.07 1.35 5.12 -4.03 -0.02 1.33 16 13 N -0.53 -9.36 8.61 -58.35 -0.50 -9.86 16 14 C 0.38 5.85 7.68 -153.55 -1.18 4.67 16 15 N -0.68 -8.48 5.29 -11.64 -0.06 -8.55 16 16 H 0.42 5.07 6.42 -40.82 -0.26 4.81 16 17 C 0.39 4.02 12.29 -90.10 -1.11 2.91 16 18 N -0.56 -6.76 10.34 -12.00 -0.12 -6.88 16 19 C 0.14 1.78 6.63 -84.50 -0.56 1.22 16 20 C -0.09 -0.93 10.02 -39.26 -0.39 -1.33 16 21 C -0.12 -1.26 9.98 -39.50 -0.39 -1.65 16 22 C 0.07 0.89 7.29 -39.35 -0.29 0.61 16 23 F -0.14 -1.78 17.26 2.25 0.04 -1.74 16 24 C -0.08 -1.15 9.63 -39.32 -0.38 -1.53 16 25 C -0.08 -1.11 5.90 -104.71 -0.62 -1.73 16 26 H 0.02 0.52 7.84 -51.93 -0.41 0.11 16 27 H 0.06 1.31 3.83 -51.92 -0.20 1.11 16 28 H 0.03 0.71 8.13 -51.93 -0.42 0.28 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.79 2.74 -51.93 -0.14 0.65 16 31 H 0.04 0.83 7.60 -51.93 -0.39 0.44 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 34 H 0.03 0.52 5.60 -51.93 -0.29 0.22 16 35 H 0.20 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.15 2.19 7.76 -52.48 -0.41 1.78 16 LS Contribution 308.02 15.07 4.64 4.64 Total: -1.00 -31.12 308.02 -8.32 -39.44 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.34 Total: 2.80 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -4.85 Total: -11.97 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.09 Total: -50.72 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -3.90 Total: 17.55 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.12 -8.32 -39.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591176525.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.567 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds