Wall clock time and date at job start Tue Mar 31 2020 06:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47346 * 2 1 4 4 C 1.50704 * 109.46996 * 239.99533 * 2 1 3 5 5 H 1.07995 * 120.00104 * 234.80923 * 4 2 1 6 6 C 1.37873 * 119.99697 * 54.81156 * 4 2 1 7 7 N 1.31515 * 120.00011 * 199.07802 * 6 4 2 8 8 Si 1.86800 * 120.00205 * 19.07576 * 6 4 2 9 9 H 1.48505 * 109.47274 * 84.99016 * 8 6 4 10 10 H 1.48500 * 109.47500 * 204.99047 * 8 6 4 11 11 H 1.48501 * 109.47397 * 324.99062 * 8 6 4 12 12 C 1.53005 * 109.46733 * 120.00326 * 2 1 3 13 13 N 1.46508 * 109.46663 * 299.99690 * 12 2 1 14 14 C 1.30724 * 119.99810 * 114.85194 * 13 12 2 15 15 N 1.38359 * 121.44637 * 354.13735 * 14 13 12 16 16 H 0.97001 * 119.95444 * 0.02562 * 15 14 13 17 17 C 1.36103 * 120.09405 * 179.97438 * 15 14 13 18 18 N 1.29646 * 123.36853 * 359.97438 * 17 15 14 19 19 C 1.35926 * 122.16406 * 0.02562 * 18 17 15 20 20 C 1.39576 * 121.39534 * 180.02562 * 19 18 17 21 21 C 1.37747 * 119.76060 * 179.97438 * 20 19 18 22 22 C 1.38946 * 120.75197 * 359.96213 * 21 20 19 23 23 F 1.35102 * 119.78314 * 180.02562 * 22 21 20 24 24 C 1.38146 * 120.42818 * 0.03644 * 22 21 20 25 25 C 1.39044 * 119.52920 * 359.97438 * 24 22 21 26 26 H 1.09005 * 109.46908 * 307.73672 * 1 2 3 27 27 H 1.09008 * 109.46784 * 67.72768 * 1 2 3 28 28 H 1.08993 * 109.47527 * 187.73050 * 1 2 3 29 29 H 1.09000 * 109.46942 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47252 * 299.99333 * 3 2 1 31 31 H 1.09000 * 109.47556 * 60.00303 * 3 2 1 32 32 H 0.96996 * 119.99950 * 180.02562 * 7 6 4 33 33 H 1.08993 * 109.47000 * 179.97438 * 12 2 1 34 34 H 1.08997 * 109.47130 * 59.99236 * 12 2 1 35 35 H 1.08001 * 118.31498 * 179.97438 * 17 15 14 36 36 H 1.08001 * 120.11663 * 359.97438 * 20 19 18 37 37 H 1.08001 * 119.62286 * 179.97438 * 21 20 19 38 38 H 1.08003 * 120.23305 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.7205 -1.5372 -1.1335 6 6 1.6133 -0.3051 -2.4798 7 7 1.7298 -1.1170 -3.5079 8 14 0.8802 1.3972 -2.7124 9 1 1.9722 2.3830 -2.9150 10 1 -0.0108 1.3944 -3.9003 11 1 0.0965 1.7676 -1.5067 12 6 2.0399 -0.7214 1.2493 13 7 1.5515 -0.0306 2.4454 14 6 0.7191 -0.6328 3.2538 15 7 0.1868 -1.8730 2.9491 16 1 0.4304 -2.3143 2.1203 17 6 -0.6773 -2.4752 3.8111 18 7 -1.0466 -1.9469 4.9359 19 6 -0.5942 -0.7333 5.3484 20 6 -1.0021 -0.1797 6.5630 21 6 -0.5220 1.0526 6.9483 22 6 0.3661 1.7530 6.1414 23 9 0.8251 2.9600 6.5387 24 6 0.7826 1.2234 4.9354 25 6 0.3071 -0.0193 4.5319 26 1 -0.3633 0.6290 0.8128 27 1 -0.3633 0.3895 -0.9511 28 1 -0.3634 -1.0182 0.1382 29 1 3.1300 1.4423 0.0005 30 1 1.6769 1.9562 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.4353 -0.8316 -4.3870 33 1 3.1299 -0.7218 1.2491 34 1 1.6765 -1.7489 1.2493 35 1 -1.0758 -3.4430 3.5443 36 1 -1.6915 -0.7157 7.1985 37 1 -0.8394 1.4790 7.8884 38 1 1.4734 1.7705 4.3108 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591176525.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:45 Heat of formation + Delta-G solvation = 23.412345 kcal Electronic energy + Delta-G solvation = -22705.240863 eV Core-core repulsion = 19269.244063 eV Total energy + Delta-G solvation = -3435.996801 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.86752 -41.90366 -39.19634 -38.18485 -36.23013 -34.03394 -33.22965 -32.17872 -30.37844 -28.03462 -27.69835 -26.95918 -25.07351 -24.82551 -22.51232 -20.96623 -20.22487 -19.35880 -18.85815 -18.10916 -17.39735 -17.26064 -16.81050 -16.64945 -15.91344 -15.73586 -15.40226 -15.08617 -14.98892 -14.82689 -14.52890 -14.37271 -14.01369 -13.75888 -13.64747 -13.40216 -13.03512 -12.83507 -12.46920 -12.33195 -12.11072 -12.01410 -11.79034 -11.17003 -10.93589 -10.71594 -10.58635 -10.45013 -10.29846 -9.85050 -8.53565 -8.36596 -6.31798 -0.42322 -0.18634 1.20046 1.28803 1.35302 1.41696 1.69509 1.89785 2.29686 2.87004 2.94727 3.00722 3.24240 3.30143 3.68855 3.93501 4.00819 4.16555 4.20436 4.23803 4.42161 4.52891 4.63092 4.69740 4.79257 4.81150 4.91595 4.98311 5.01644 5.07755 5.11685 5.14809 5.21681 5.39397 5.49816 5.65724 5.72997 5.78137 6.04790 6.30248 6.70506 6.92458 7.05811 7.32578 8.79569 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.022312 B = 0.004565 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.613359 B = 6131.929347 C = 6912.877086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.042 3.958 3 C -0.132 4.132 4 C -0.515 4.515 5 H 0.040 0.960 6 C 0.032 3.968 7 N -0.933 5.933 8 Si 0.922 3.078 9 H -0.286 1.286 10 H -0.308 1.308 11 H -0.220 1.220 12 C 0.083 3.917 13 N -0.565 5.565 14 C 0.389 3.611 15 N -0.676 5.676 16 H 0.425 0.575 17 C 0.396 3.604 18 N -0.563 5.563 19 C 0.128 3.872 20 C -0.082 4.082 21 C -0.104 4.104 22 C 0.063 3.937 23 F -0.144 7.144 24 C -0.095 4.095 25 C -0.105 4.105 26 H 0.035 0.965 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.025 0.975 31 H 0.053 0.947 32 H 0.264 0.736 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.245 0.755 36 H 0.171 0.829 37 H 0.174 0.826 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 -0.400 21.252 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.041 3.959 3 C -0.189 4.189 4 C -0.553 4.553 5 H 0.059 0.941 6 C -0.166 4.166 7 N -0.572 5.572 8 Si 0.752 3.248 9 H -0.214 1.214 10 H -0.237 1.237 11 H -0.145 1.145 12 C -0.046 4.046 13 N -0.288 5.288 14 C 0.115 3.885 15 N -0.310 5.310 16 H 0.266 0.734 17 C 0.107 3.893 18 N -0.285 5.285 19 C 0.019 3.981 20 C -0.101 4.101 21 C -0.124 4.124 22 C 0.043 3.957 23 F -0.123 7.123 24 C -0.116 4.116 25 C -0.111 4.111 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.260 0.740 36 H 0.189 0.811 37 H 0.192 0.808 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.795 0.199 21.568 22.935 hybrid contribution 0.752 0.413 -2.165 2.329 sum -7.042 0.612 19.404 20.651 Atomic orbital electron populations 1.22163 0.97277 0.99776 0.99681 1.18456 0.92594 0.92814 0.92054 1.22072 1.00250 0.97749 0.98793 1.21047 1.27716 1.16197 0.90377 0.94130 1.25577 0.95518 0.99708 0.95845 1.70108 1.49309 1.36479 1.01329 0.86738 0.78907 0.82004 0.77195 1.21384 1.23659 1.14478 1.21785 0.99188 0.94972 0.88694 1.72790 1.16687 1.31674 1.07677 1.21143 0.91528 0.82716 0.93117 1.44426 1.43351 1.18944 1.24260 0.73360 1.25551 0.82931 0.97308 0.83488 1.68589 1.30828 1.12639 1.16486 1.18987 0.93208 0.90918 0.94989 1.20923 1.00391 0.94566 0.94229 1.21464 0.95479 0.94589 1.00828 1.17697 0.99947 0.82955 0.95114 1.91489 1.87806 1.42312 1.90649 1.20925 1.00136 0.94987 0.95568 1.18855 1.02463 0.96711 0.93076 0.94597 0.93989 0.93549 0.93833 0.95664 0.92778 0.92647 0.91387 0.94295 0.73969 0.81137 0.80834 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.49 7.52 71.98 0.54 -4.95 16 2 C 0.04 1.87 0.57 -52.93 -0.03 1.84 16 3 C -0.13 -5.75 7.69 71.98 0.55 -5.20 16 4 C -0.52 -27.80 8.61 25.60 0.22 -27.58 16 5 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 6 C 0.03 1.82 5.25 84.65 0.44 2.27 16 7 N -0.93 -56.50 13.96 21.45 0.30 -56.20 16 8 Si 0.92 44.42 22.95 68.60 1.57 46.00 16 9 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 10 H -0.31 -14.95 7.11 99.48 0.71 -14.25 16 11 H -0.22 -9.74 4.56 99.48 0.45 -9.29 16 12 C 0.08 3.18 5.12 86.38 0.44 3.63 16 13 N -0.57 -19.74 8.61 -338.53 -2.91 -22.66 16 14 C 0.39 11.57 7.68 136.04 1.05 12.61 16 15 N -0.68 -15.54 5.29 -190.74 -1.01 -16.55 16 16 H 0.42 9.41 6.42 -92.71 -0.59 8.82 16 17 C 0.40 6.81 12.29 180.17 2.21 9.02 16 18 N -0.56 -11.85 10.34 -191.89 -1.98 -13.84 16 19 C 0.13 3.00 6.63 39.52 0.26 3.26 16 20 C -0.08 -1.45 10.02 22.48 0.23 -1.23 16 21 C -0.10 -1.76 9.98 22.32 0.22 -1.54 16 22 C 0.06 1.44 7.29 22.42 0.16 1.61 16 23 F -0.14 -3.47 17.26 44.97 0.78 -2.69 16 24 C -0.09 -2.57 9.63 22.44 0.22 -2.36 16 25 C -0.11 -2.90 5.90 -19.92 -0.12 -3.02 16 26 H 0.03 1.40 7.84 -2.38 -0.02 1.38 16 27 H 0.04 1.86 3.83 -2.38 -0.01 1.85 16 28 H 0.05 1.78 8.13 -2.39 -0.02 1.76 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.02 1.13 2.74 -2.39 -0.01 1.12 16 31 H 0.05 2.20 7.60 -2.39 -0.02 2.18 16 32 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.04 1.36 5.60 -2.39 -0.01 1.35 16 35 H 0.24 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 38 H 0.14 4.03 7.76 -2.91 -0.02 4.01 16 Total: -1.00 -68.46 308.02 3.41 -65.06 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.26 Total: 12.52 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 6.40 Total: -11.63 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -5.61 Total: -109.24 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.69 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.57 Total: 46.00 kcal Total: -68.46 3.41 -65.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591176525.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.470 kcal (2) G-P(sol) polarization free energy of solvation -68.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds