Wall clock time and date at job start Tue Mar 31 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 N 1.28809 * 125.92020 * 2 1 4 4 N 1.28660 * 111.76327 * 179.97438 * 3 2 1 5 5 C 1.34840 * 109.23560 * 0.02562 * 4 3 2 6 6 C 1.39709 * 134.78255 * 180.35279 * 5 4 3 7 7 C 1.38104 * 119.47004 * 180.16536 * 6 5 4 8 8 N 1.40126 * 119.79647 * 179.73617 * 7 6 5 9 9 C 1.34774 * 119.99708 * 324.61541 * 8 7 6 10 10 O 1.21595 * 120.00418 * 4.60818 * 9 8 7 11 11 N 1.34772 * 119.99979 * 184.60850 * 9 8 7 12 12 C 1.46504 * 120.00269 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47083 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.46733 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00533 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99889 * 180.02562 * 14 13 12 17 17 N 1.31507 * 119.99872 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00185 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47296 * 89.99925 * 18 16 14 20 20 H 1.48495 * 109.47352 * 210.00187 * 18 16 14 21 21 H 1.48501 * 109.46983 * 330.00268 * 18 16 14 22 22 C 1.39489 * 120.40505 * 359.45805 * 7 6 5 23 23 C 1.36607 * 120.65146 * 0.25621 * 22 7 6 24 24 C 1.37400 * 125.91755 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47398 * 270.04270 * 1 2 3 26 26 H 1.09001 * 109.46649 * 30.05090 * 1 2 3 27 27 H 1.09007 * 109.46835 * 150.04204 * 1 2 3 28 28 H 1.07996 * 120.26162 * 359.92103 * 6 5 4 29 29 H 0.96999 * 119.99884 * 144.88853 * 8 7 6 30 30 H 0.97002 * 119.99956 * 0.02562 * 11 9 8 31 31 H 1.08999 * 109.47529 * 300.00295 * 12 11 9 32 32 H 1.09002 * 109.46815 * 60.00452 * 12 11 9 33 33 H 1.08993 * 109.47361 * 300.00170 * 13 12 11 34 34 H 1.09002 * 109.46731 * 60.00639 * 13 12 11 35 35 H 0.97002 * 120.00105 * 180.02562 * 17 16 14 36 36 H 1.08000 * 119.67261 * 180.27686 * 22 7 6 37 37 H 1.08002 * 120.01469 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2208 1.0431 0.0000 4 7 3.4683 0.7285 0.0005 5 6 3.5876 -0.6146 0.0004 6 6 4.6625 -1.5071 0.0068 7 6 4.4172 -2.8662 0.0008 8 7 5.4901 -3.7675 0.0016 9 6 6.6208 -3.4697 -0.6688 10 8 6.7424 -2.3847 -1.2041 11 7 7.6166 -4.3745 -0.7459 12 6 8.8455 -4.0510 -1.4750 13 6 9.8057 -5.2404 -1.4090 14 6 11.0700 -4.9073 -2.1585 15 1 11.1780 -3.9437 -2.6340 16 6 12.0888 -5.8330 -2.2373 17 7 11.9571 -7.0066 -1.6588 18 14 13.6557 -5.4205 -3.1669 19 1 14.6314 -4.7941 -2.2392 20 1 14.2380 -6.6642 -3.7320 21 1 13.3432 -4.4752 -4.2688 22 6 3.1078 -3.3472 -0.0003 23 6 2.0488 -2.4843 -0.0007 24 6 2.2711 -1.1128 0.0005 25 1 -0.3634 0.0008 1.0276 26 1 -0.3633 0.8896 -0.5146 27 1 -0.3633 -0.8904 -0.5132 28 1 5.6771 -1.1372 0.0125 29 1 5.4176 -4.6074 0.4813 30 1 7.5195 -5.2402 -0.3192 31 1 8.6044 -3.8355 -2.5159 32 1 9.3170 -3.1783 -1.0231 33 1 10.0468 -5.4554 -0.3681 34 1 9.3344 -6.1133 -1.8607 35 1 12.6741 -7.6577 -1.7138 36 1 2.9296 -4.4124 -0.0006 37 1 1.0393 -2.8680 -0.0011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592275660.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:14 Heat of formation + Delta-G solvation = 87.417693 kcal Electronic energy + Delta-G solvation = -21407.315426 eV Core-core repulsion = 17994.014067 eV Total energy + Delta-G solvation = -3413.301359 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.24313 -40.31922 -37.98070 -35.07588 -34.99902 -34.33137 -32.86991 -30.75078 -30.20237 -28.90909 -28.05021 -25.06047 -24.09363 -22.99032 -21.43556 -21.08704 -20.69779 -18.80262 -18.25021 -17.48148 -16.85306 -16.48835 -16.16507 -15.47331 -15.02826 -14.58092 -14.54420 -14.28515 -13.91004 -13.68295 -13.48071 -13.33105 -13.05026 -12.52897 -12.30428 -12.27593 -11.98455 -11.22350 -11.07551 -10.98751 -10.84515 -10.64684 -10.42264 -10.23007 -9.89381 -9.59844 -9.28984 -8.80561 -8.61163 -8.40743 -7.97819 -6.10908 -4.13537 0.47104 1.07998 1.99017 2.20468 2.74207 3.24420 3.29618 3.35828 3.40448 3.61476 3.82967 4.16678 4.33175 4.45567 4.56372 4.58130 4.73661 4.84028 4.91360 5.00247 5.19933 5.26544 5.69280 5.83444 5.95533 6.03205 6.19938 6.25961 6.34292 6.37441 6.71728 6.79152 6.85867 7.04384 7.52073 7.59318 7.87851 8.15315 8.22656 8.29055 8.76287 8.92657 9.51470 11.00707 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.045053 B = 0.002495 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.346054 B =11221.317414 C =11709.768983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.324 5.324 3 N -0.027 5.027 4 N -0.252 5.252 5 C 0.031 3.969 6 C -0.056 4.056 7 C 0.168 3.832 8 N -0.689 5.689 9 C 0.695 3.305 10 O -0.576 6.576 11 N -0.730 5.730 12 C 0.138 3.862 13 C 0.013 3.987 14 C -0.521 4.521 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.102 4.102 23 C -0.087 4.087 24 C 0.004 3.996 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.159 0.841 29 H 0.408 0.592 30 H 0.396 0.604 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.262 0.738 36 H 0.140 0.860 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.686 5.259 6.496 27.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.125 5.125 3 N -0.008 5.008 4 N -0.127 5.127 5 C -0.094 4.094 6 C -0.081 4.081 7 C 0.069 3.931 8 N -0.338 5.338 9 C 0.396 3.604 10 O -0.453 6.453 11 N -0.383 5.383 12 C 0.016 3.984 13 C -0.025 4.025 14 C -0.560 4.560 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.126 4.126 23 C -0.109 4.109 24 C -0.114 4.114 25 H 0.106 0.894 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.176 0.824 29 H 0.244 0.756 30 H 0.229 0.771 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.158 0.842 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -25.397 7.591 5.977 27.172 hybrid contribution 0.538 -1.891 -0.079 1.968 sum -24.858 5.700 5.897 26.176 Atomic orbital electron populations 1.22160 0.72548 1.05703 1.04646 1.47019 1.08502 1.03194 1.53800 1.77977 0.96990 1.12431 1.13371 1.75395 1.07301 1.11481 1.18540 1.19717 0.92650 0.91088 1.05993 1.20403 0.99078 0.89841 0.98812 1.17124 0.86437 0.88701 1.00799 1.42659 1.13909 1.22337 1.54893 1.16080 0.79951 0.84934 0.79478 1.90930 1.80255 1.22592 1.51545 1.45567 1.17421 1.17338 1.57982 1.21692 0.81489 1.00589 0.94672 1.19333 0.93133 0.91991 0.98010 1.21040 1.00045 1.01102 1.33798 0.92159 1.24993 0.98792 0.94916 0.95599 1.69948 1.33326 1.06037 1.44025 0.86502 0.83062 0.77822 0.80124 1.20534 1.21193 1.19694 1.20548 0.90196 1.00225 1.01620 1.19414 0.99684 0.88004 1.03832 1.19772 0.90931 0.90967 1.09768 0.89434 0.88099 0.88616 0.82386 0.75611 0.77098 0.92461 0.92407 0.95890 0.95910 0.92843 0.84177 0.84911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 11.40 59.85 0.68 1.06 16 2 N -0.32 -3.34 3.80 -65.48 -0.25 -3.59 16 3 N -0.03 -0.37 13.08 60.35 0.79 0.42 16 4 N -0.25 -4.06 12.43 32.04 0.40 -3.66 16 5 C 0.03 0.46 7.36 -85.04 -0.63 -0.17 16 6 C -0.06 -0.84 8.74 -39.08 -0.34 -1.18 16 7 C 0.17 2.05 6.29 -83.65 -0.53 1.53 16 8 N -0.69 -8.17 5.35 -14.21 -0.08 -8.25 16 9 C 0.70 11.45 8.40 -86.92 -0.73 10.72 16 10 O -0.58 -11.82 13.78 5.28 0.07 -11.75 16 11 N -0.73 -12.03 5.56 -65.22 -0.36 -12.39 16 12 C 0.14 2.85 5.61 -4.04 -0.02 2.83 16 13 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 14 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 18 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.10 -0.89 9.88 -39.70 -0.39 -1.28 16 23 C -0.09 -0.72 9.99 -39.91 -0.40 -1.12 16 24 C 0.00 0.05 6.94 -84.16 -0.58 -0.53 16 25 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.10 0.18 8.14 -51.92 -0.42 -0.24 16 28 H 0.16 2.74 6.22 -52.49 -0.33 2.42 16 29 H 0.41 3.27 8.84 -40.82 -0.36 2.91 16 30 H 0.40 5.39 8.49 -40.82 -0.35 5.04 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 37 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 325.14 15.07 4.90 4.90 Total: -1.00 -35.58 325.14 -6.69 -42.27 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.38 Total: 1.90 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -3.49 Total: -1.01 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 1.24 Total: -52.55 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.07 Total: -11.75 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.58 -6.69 -42.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592275660.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.683 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds