Wall clock time and date at job start Tue Mar 31 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 N 1.28809 * 125.92020 * 2 1 4 4 N 1.28660 * 111.76327 * 179.97438 * 3 2 1 5 5 C 1.34840 * 109.23560 * 0.02562 * 4 3 2 6 6 C 1.39709 * 134.78255 * 180.35279 * 5 4 3 7 7 C 1.38104 * 119.47004 * 180.16536 * 6 5 4 8 8 N 1.40126 * 119.79647 * 179.73617 * 7 6 5 9 9 C 1.34774 * 119.99708 * 324.61541 * 8 7 6 10 10 O 1.21595 * 120.00418 * 4.60818 * 9 8 7 11 11 N 1.34772 * 119.99979 * 184.60850 * 9 8 7 12 12 C 1.46504 * 120.00269 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47083 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.46733 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00533 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99889 * 180.02562 * 14 13 12 17 17 N 1.31507 * 119.99872 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00185 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47296 * 89.99925 * 18 16 14 20 20 H 1.48495 * 109.47352 * 210.00187 * 18 16 14 21 21 H 1.48501 * 109.46983 * 330.00268 * 18 16 14 22 22 C 1.39489 * 120.40505 * 359.45805 * 7 6 5 23 23 C 1.36607 * 120.65146 * 0.25621 * 22 7 6 24 24 C 1.37400 * 125.91755 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47398 * 270.04270 * 1 2 3 26 26 H 1.09001 * 109.46649 * 30.05090 * 1 2 3 27 27 H 1.09007 * 109.46835 * 150.04204 * 1 2 3 28 28 H 1.07996 * 120.26162 * 359.92103 * 6 5 4 29 29 H 0.96999 * 119.99884 * 144.88853 * 8 7 6 30 30 H 0.97002 * 119.99956 * 0.02562 * 11 9 8 31 31 H 1.08999 * 109.47529 * 300.00295 * 12 11 9 32 32 H 1.09002 * 109.46815 * 60.00452 * 12 11 9 33 33 H 1.08993 * 109.47361 * 300.00170 * 13 12 11 34 34 H 1.09002 * 109.46731 * 60.00639 * 13 12 11 35 35 H 0.97002 * 120.00105 * 180.02562 * 17 16 14 36 36 H 1.08000 * 119.67261 * 180.27686 * 22 7 6 37 37 H 1.08002 * 120.01469 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2208 1.0431 0.0000 4 7 3.4683 0.7285 0.0005 5 6 3.5876 -0.6146 0.0004 6 6 4.6625 -1.5071 0.0068 7 6 4.4172 -2.8662 0.0008 8 7 5.4901 -3.7675 0.0016 9 6 6.6208 -3.4697 -0.6688 10 8 6.7424 -2.3847 -1.2041 11 7 7.6166 -4.3745 -0.7459 12 6 8.8455 -4.0510 -1.4750 13 6 9.8057 -5.2404 -1.4090 14 6 11.0700 -4.9073 -2.1585 15 1 11.1780 -3.9437 -2.6340 16 6 12.0888 -5.8330 -2.2373 17 7 11.9571 -7.0066 -1.6588 18 14 13.6557 -5.4205 -3.1669 19 1 14.6314 -4.7941 -2.2392 20 1 14.2380 -6.6642 -3.7320 21 1 13.3432 -4.4752 -4.2688 22 6 3.1078 -3.3472 -0.0003 23 6 2.0488 -2.4843 -0.0007 24 6 2.2711 -1.1128 0.0005 25 1 -0.3634 0.0008 1.0276 26 1 -0.3633 0.8896 -0.5146 27 1 -0.3633 -0.8904 -0.5132 28 1 5.6771 -1.1372 0.0125 29 1 5.4176 -4.6074 0.4813 30 1 7.5195 -5.2402 -0.3192 31 1 8.6044 -3.8355 -2.5159 32 1 9.3170 -3.1783 -1.0231 33 1 10.0468 -5.4554 -0.3681 34 1 9.3344 -6.1133 -1.8607 35 1 12.6741 -7.6577 -1.7138 36 1 2.9296 -4.4124 -0.0006 37 1 1.0393 -2.8680 -0.0011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592275660.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:13 Heat of formation + Delta-G solvation = 59.876774 kcal Electronic energy + Delta-G solvation = -21408.509690 eV Core-core repulsion = 17994.014067 eV Total energy + Delta-G solvation = -3414.495623 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.13437 -41.54915 -39.01709 -36.64205 -35.81838 -35.51290 -34.79591 -31.79082 -31.54887 -30.15558 -28.66491 -26.82075 -25.16957 -23.99309 -22.90402 -22.29660 -21.91671 -19.87048 -19.37394 -18.45972 -18.28889 -17.66518 -17.29941 -16.75715 -16.50716 -16.09082 -15.83835 -15.33008 -15.23810 -14.73082 -14.35354 -14.28639 -14.02942 -13.75690 -13.49704 -13.21588 -13.18918 -12.93611 -12.80360 -12.52304 -12.24757 -11.89544 -11.74429 -11.63890 -11.49023 -11.31962 -11.01528 -10.59258 -10.09131 -9.60047 -8.97287 -8.23284 -6.32749 -0.38790 0.17912 1.30151 1.33810 1.42731 1.42911 1.53211 1.58977 2.00502 2.41734 2.64546 2.95212 3.11851 3.29118 3.60258 3.71456 4.00169 4.09349 4.33368 4.37893 4.46811 4.52826 4.53523 4.65437 4.81696 4.88924 5.03401 5.13857 5.17889 5.23058 5.31066 5.50837 5.61468 5.62210 5.79701 5.83614 5.97699 6.18318 6.80218 7.01798 7.28652 7.36267 7.47793 8.88443 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.045053 B = 0.002495 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.346054 B =11221.317414 C =11709.768983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.306 5.306 3 N -0.045 5.045 4 N -0.310 5.310 5 C 0.001 3.999 6 C -0.098 4.098 7 C 0.168 3.832 8 N -0.666 5.666 9 C 0.696 3.304 10 O -0.620 6.620 11 N -0.722 5.722 12 C 0.159 3.841 13 C 0.024 3.976 14 C -0.546 4.546 15 H 0.057 0.943 16 C 0.008 3.992 17 N -0.925 5.925 18 Si 0.962 3.038 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.268 1.268 22 C -0.093 4.093 23 C -0.062 4.062 24 C 0.001 3.999 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.130 0.870 28 H 0.117 0.883 29 H 0.430 0.570 30 H 0.412 0.588 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.011 0.989 34 H 0.013 0.987 35 H 0.266 0.734 36 H 0.187 0.813 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.674 3.439 6.625 29.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.108 5.108 3 N -0.026 5.026 4 N -0.184 5.184 5 C -0.126 4.126 6 C -0.124 4.124 7 C 0.069 3.931 8 N -0.317 5.317 9 C 0.396 3.604 10 O -0.500 6.500 11 N -0.377 5.377 12 C 0.035 3.965 13 C -0.013 4.013 14 C -0.585 4.585 15 H 0.075 0.925 16 C -0.191 4.191 17 N -0.564 5.564 18 Si 0.787 3.213 19 H -0.199 1.199 20 H -0.204 1.204 21 H -0.192 1.192 22 C -0.116 4.116 23 C -0.083 4.083 24 C -0.119 4.119 25 H 0.129 0.871 26 H 0.129 0.871 27 H 0.148 0.852 28 H 0.135 0.865 29 H 0.270 0.730 30 H 0.248 0.752 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.029 0.971 34 H 0.031 0.969 35 H 0.075 0.925 36 H 0.205 0.795 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -28.448 5.755 6.148 29.668 hybrid contribution 1.287 -1.329 -0.077 1.852 sum -27.160 4.427 6.070 28.180 Atomic orbital electron populations 1.22788 0.68864 1.07989 1.06886 1.47546 1.10308 1.02099 1.50842 1.77847 0.96802 1.13809 1.14126 1.75312 1.08760 1.12967 1.21336 1.19914 0.94541 0.90944 1.07174 1.20173 0.97577 0.91650 1.03016 1.17421 0.87909 0.87523 1.00242 1.42331 1.12432 1.23065 1.53826 1.16165 0.80768 0.84017 0.79467 1.90928 1.81223 1.24412 1.53400 1.45167 1.16354 1.18248 1.57905 1.21132 0.82449 0.98529 0.94415 1.19129 0.92913 0.92675 0.96620 1.21461 1.01593 1.01167 1.34260 0.92467 1.25825 1.02022 0.94786 0.96426 1.70040 1.34467 1.06862 1.45054 0.85483 0.79077 0.77810 0.78909 1.19873 1.20450 1.19244 1.20986 0.87957 1.02613 1.00040 1.20048 1.02113 0.85975 1.00200 1.20122 0.89544 0.92512 1.09700 0.87109 0.87100 0.85213 0.86498 0.72967 0.75193 0.93640 0.93758 0.97051 0.96912 0.92542 0.79543 0.79451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 11.40 127.77 1.46 1.79 16 2 N -0.31 -5.74 3.80 -361.07 -1.37 -7.11 16 3 N -0.05 -1.27 13.08 37.02 0.48 -0.78 16 4 N -0.31 -10.70 12.43 -52.56 -0.65 -11.35 16 5 C 0.00 0.02 7.36 39.65 0.29 0.31 16 6 C -0.10 -3.14 8.74 22.59 0.20 -2.94 16 7 C 0.17 3.90 6.29 38.08 0.24 4.14 16 8 N -0.67 -14.99 5.35 -317.13 -1.70 -16.68 16 9 C 0.70 23.21 8.40 179.06 1.50 24.71 16 10 O -0.62 -26.80 13.78 -4.01 -0.06 -26.85 16 11 N -0.72 -23.88 5.56 -478.52 -2.66 -26.54 16 12 C 0.16 6.76 5.61 86.38 0.48 7.24 16 13 C 0.02 1.19 5.09 29.85 0.15 1.34 16 14 C -0.55 -30.35 9.11 25.60 0.23 -30.12 16 15 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 16 C 0.01 0.46 5.46 84.66 0.46 0.93 16 17 N -0.92 -53.55 13.29 21.45 0.28 -53.26 16 18 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 C -0.09 -1.21 9.88 22.19 0.22 -0.99 16 23 C -0.06 -0.72 9.99 22.06 0.22 -0.50 16 24 C 0.00 0.03 6.94 39.06 0.27 0.30 16 25 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.13 -0.24 8.14 -2.38 -0.02 -0.26 16 28 H 0.12 4.60 6.22 -2.91 -0.02 4.58 16 29 H 0.43 5.71 8.84 -92.71 -0.82 4.89 16 30 H 0.41 10.87 8.49 -92.71 -0.79 10.08 16 31 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 32 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 36 H 0.19 0.76 8.06 -2.91 -0.02 0.73 16 37 H 0.19 0.22 8.06 -2.91 -0.02 0.20 16 Total: -1.00 -83.80 325.14 1.61 -82.19 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -0.48 Total: 8.50 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 5.73 Total: 6.22 kcal Atomic # 7 Polarization: -110.12 SS G_CDS: -5.61 Total: -115.73 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.06 Total: -26.85 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -83.80 1.61 -82.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592275660.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.069 kcal (2) G-P(sol) polarization free energy of solvation -83.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds