Wall clock time and date at job start Tue Mar 31 2020 06:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00247 * 2 1 4 4 H 1.48491 * 109.46911 * 240.00009 * 3 2 1 5 5 H 1.48498 * 109.46700 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47265 * 119.99901 * 3 2 1 7 7 C 1.37884 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00057 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99868 * 0.02562 * 7 2 1 10 10 O 1.42910 * 110.28528 * 299.32318 * 9 7 2 11 11 C 1.54257 * 110.32879 * 61.44756 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.94622 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.50706 * 109.46840 * 54.48842 * 14 13 12 16 16 C 1.38284 * 120.12039 * 269.73031 * 15 14 13 17 17 C 1.37928 * 120.34775 * 179.53253 * 16 15 14 18 18 C 1.39281 * 120.24240 * 0.55612 * 17 16 15 19 19 C 1.38881 * 118.87933 * 0.08986 * 18 17 16 20 20 C 1.37748 * 120.77954 * 359.43916 * 19 18 17 21 21 C 1.51641 * 107.04798 * 179.03850 * 19 18 17 22 22 C 1.54711 * 101.94256 * 344.85953 * 21 19 18 23 23 O 1.36137 * 129.89733 * 180.66484 * 18 17 16 24 24 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 25 25 H 0.97005 * 119.99855 * 359.97438 * 1 2 3 26 26 H 0.96699 * 114.00154 * 60.67426 * 10 9 7 27 27 H 1.09002 * 110.32715 * 237.89677 * 11 9 7 28 28 H 1.08998 * 110.32251 * 0.02562 * 11 9 7 29 29 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 30 30 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 31 31 H 1.09003 * 109.47294 * 174.49077 * 14 13 12 32 32 H 1.09000 * 109.47223 * 294.49440 * 14 13 12 33 33 H 1.07998 * 119.82243 * 359.78516 * 16 15 14 34 34 H 1.08007 * 119.87852 * 180.26083 * 17 16 15 35 35 H 1.08004 * 120.00573 * 180.35650 * 20 19 18 36 36 H 1.08999 * 110.94055 * 103.01944 * 21 19 18 37 37 H 1.08997 * 110.93588 * 226.70472 * 21 19 18 38 38 H 1.08993 * 110.74974 * 266.91082 * 22 21 19 39 39 H 1.08993 * 110.90800 * 143.61962 * 22 21 19 40 40 H 1.08999 * 110.41133 * 201.79165 * 24 13 12 41 41 H 1.09001 * 110.41003 * 79.35561 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4343 -2.5997 1.1690 11 6 0.3848 -2.6178 -1.2703 12 6 0.9159 -3.8672 -2.0054 13 7 2.3118 -4.0222 -1.5164 14 6 2.7896 -5.3972 -1.7135 15 6 2.6248 -5.7836 -3.1609 16 6 1.4543 -6.3815 -3.5906 17 6 1.2946 -6.7282 -4.9160 18 6 2.3167 -6.4895 -5.8315 19 6 3.4928 -5.9007 -5.3855 20 6 3.6464 -5.5464 -4.0632 21 6 4.4163 -5.7894 -6.5831 22 6 3.7381 -6.7383 -7.5996 23 8 2.3662 -6.7371 -7.1693 24 6 2.2333 -3.6880 -0.0709 25 1 -0.4850 0.8401 0.0004 26 1 -0.2326 -1.9035 1.2438 27 1 -0.6633 -2.7528 -1.0030 28 1 0.5050 -1.7323 -1.8944 29 1 0.3224 -4.7432 -1.7435 30 1 0.9044 -3.7076 -3.0835 31 1 3.8426 -5.4590 -1.4386 32 1 2.2103 -6.0764 -1.0880 33 1 0.6593 -6.5741 -2.8854 34 1 0.3756 -7.1910 -5.2441 35 1 4.5641 -5.0841 -3.7310 36 1 4.4421 -4.7675 -6.9615 37 1 5.4192 -6.1369 -6.3352 38 1 4.1622 -7.7403 -7.5349 39 1 3.8251 -6.3483 -8.6136 40 1 3.2133 -3.3946 0.3052 41 1 1.8462 -4.5355 0.4947 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:26 Heat of formation + Delta-G solvation = -47.069963 kcal Electronic energy + Delta-G solvation = -23025.271450 eV Core-core repulsion = 19677.385861 eV Total energy + Delta-G solvation = -3347.885589 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.10495 -38.75801 -37.29023 -34.74618 -32.72847 -32.05920 -31.43945 -29.30838 -28.89354 -27.75631 -25.37829 -23.92463 -23.44619 -22.00569 -21.03235 -19.98744 -19.34508 -17.42179 -16.99113 -16.71174 -16.26095 -15.45717 -14.89979 -14.81678 -14.50573 -14.06909 -13.82187 -13.49588 -13.34057 -13.15945 -13.03418 -12.60956 -12.37012 -12.15149 -11.90395 -11.73347 -11.55155 -11.14338 -10.96770 -10.88233 -10.81956 -10.63721 -10.48867 -10.41030 -10.26119 -9.87181 -9.00587 -8.82628 -8.52089 -8.17140 -8.01594 -7.71461 -6.12199 -4.17620 1.31704 1.42326 3.19438 3.30716 3.34615 3.38375 3.69048 4.31922 4.38823 4.45913 4.71583 4.79399 4.89122 5.00797 5.14551 5.20522 5.22271 5.40805 5.50564 5.59037 5.61975 5.69726 5.79301 5.84351 6.01625 6.14014 6.18783 6.24326 6.30945 6.39518 6.42082 6.56584 6.60991 6.72085 6.91270 7.10960 7.18352 7.26918 7.59503 7.70963 7.73893 7.90093 8.26371 8.84353 9.46553 9.55412 10.95308 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022894 B = 0.003858 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.738632 B = 7255.473029 C = 7748.062573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.066 3.934 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.250 3.750 10 O -0.595 6.595 11 C -0.121 4.121 12 C 0.036 3.964 13 N -0.494 5.494 14 C 0.085 3.915 15 C -0.094 4.094 16 C -0.078 4.078 17 C -0.137 4.137 18 C 0.095 3.905 19 C -0.177 4.177 20 C -0.049 4.049 21 C -0.109 4.109 22 C 0.052 3.948 23 O -0.309 6.309 24 C 0.052 3.948 25 H 0.266 0.734 26 H 0.382 0.618 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.028 0.972 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.703 -13.109 -11.271 18.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.079 0.921 9 C 0.210 3.790 10 O -0.404 6.404 11 C -0.160 4.160 12 C -0.092 4.092 13 N -0.219 5.219 14 C -0.043 4.043 15 C -0.095 4.095 16 C -0.096 4.096 17 C -0.156 4.156 18 C 0.050 3.950 19 C -0.178 4.178 20 C -0.068 4.068 21 C -0.146 4.146 22 C -0.023 4.023 23 O -0.223 6.223 24 C -0.075 4.075 25 H 0.075 0.925 26 H 0.232 0.768 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.122 0.878 40 H 0.095 0.905 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 6.133 -13.207 -11.604 18.620 hybrid contribution -0.333 0.963 0.162 1.032 sum 5.800 -12.244 -11.442 17.734 Atomic orbital electron populations 1.69689 1.05892 1.27339 1.51202 1.25000 0.94972 0.99351 0.94189 0.86545 0.79562 0.82528 0.78703 1.20175 1.21320 1.20199 1.21608 0.93506 0.90421 1.50169 0.92058 1.19252 0.86430 0.91480 0.81868 1.86082 1.52118 1.55749 1.46488 1.22853 0.98201 0.95656 0.99249 1.23167 0.88374 0.98101 0.99560 1.65511 1.21778 1.19689 1.14912 1.21181 1.01284 0.90765 0.91103 1.19693 0.93961 0.99805 0.96031 1.20829 0.97036 0.97211 0.94549 1.20163 0.98683 1.05293 0.91426 1.19523 0.95616 0.96394 0.83443 1.20700 0.96876 1.04837 0.95343 1.20170 0.99163 0.97001 0.90428 1.21761 0.99110 1.01184 0.92537 1.23794 0.79576 0.99807 0.99125 1.86814 1.27847 1.88023 1.19608 1.23025 1.00406 0.97435 0.86678 0.92454 0.76755 0.93168 0.90730 0.95413 0.91636 0.90212 0.94246 0.85371 0.85679 0.85567 0.89178 0.89223 0.90817 0.87845 0.90486 0.95037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.44 10.81 55.43 0.60 -23.84 16 2 C 0.07 1.78 5.02 -17.82 -0.09 1.69 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.15 8.10 -34.44 -0.28 -14.43 16 8 H 0.06 1.68 7.54 -52.49 -0.40 1.28 16 9 C 0.25 6.28 1.05 -90.39 -0.10 6.18 16 10 O -0.60 -15.64 12.94 -35.23 -0.46 -16.09 16 11 C -0.12 -2.86 5.54 -25.35 -0.14 -3.00 16 12 C 0.04 0.71 4.97 -2.09 -0.01 0.70 16 13 N -0.49 -9.69 5.48 -231.26 -1.27 -10.96 16 14 C 0.08 1.33 5.23 -4.97 -0.03 1.30 16 15 C -0.09 -1.38 4.66 -104.56 -0.49 -1.86 16 16 C -0.08 -1.07 8.38 -39.68 -0.33 -1.40 16 17 C -0.14 -1.83 10.06 -39.31 -0.40 -2.22 16 18 C 0.10 1.31 7.03 -38.96 -0.27 1.04 16 19 C -0.18 -2.30 6.27 -104.10 -0.65 -2.95 16 20 C -0.05 -0.68 9.70 -39.72 -0.39 -1.06 16 21 C -0.11 -1.04 7.12 -26.52 -0.19 -1.23 16 22 C 0.05 0.46 8.01 38.06 0.30 0.76 16 23 O -0.31 -3.98 11.11 -20.18 -0.22 -4.20 16 24 C 0.05 1.13 5.78 -2.18 -0.01 1.12 16 25 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.38 10.15 7.32 45.56 0.33 10.48 16 27 H 0.05 1.19 7.98 -51.93 -0.41 0.78 16 28 H 0.07 1.95 7.24 -51.93 -0.38 1.57 16 29 H 0.03 0.51 7.15 -51.93 -0.37 0.14 16 30 H 0.07 1.29 7.76 -51.93 -0.40 0.88 16 31 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 32 H 0.04 0.60 7.82 -51.93 -0.41 0.19 16 33 H 0.13 1.62 7.42 -52.49 -0.39 1.23 16 34 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.13 1.61 8.06 -52.48 -0.42 1.18 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.68 7.68 -51.93 -0.40 1.28 16 41 H 0.03 0.66 7.76 -51.93 -0.40 0.26 16 LS Contribution 328.85 15.07 4.96 4.96 Total: -1.00 -29.43 328.85 -9.79 -39.22 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -5.32 Total: 10.19 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -3.06 Total: -15.37 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: -0.67 Total: -34.81 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.68 Total: -20.30 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.43 -9.79 -39.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.847 kcal (2) G-P(sol) polarization free energy of solvation -29.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds