Wall clock time and date at job start Tue Mar 31 2020 06:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00247 * 2 1 4 4 H 1.48491 * 109.46911 * 240.00009 * 3 2 1 5 5 H 1.48498 * 109.46700 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47265 * 119.99901 * 3 2 1 7 7 C 1.37884 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00057 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99868 * 0.02562 * 7 2 1 10 10 O 1.42910 * 110.28528 * 299.32318 * 9 7 2 11 11 C 1.54257 * 110.32879 * 61.44756 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.94622 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.50706 * 109.46840 * 54.48842 * 14 13 12 16 16 C 1.38284 * 120.12039 * 269.73031 * 15 14 13 17 17 C 1.37928 * 120.34775 * 179.53253 * 16 15 14 18 18 C 1.39281 * 120.24240 * 0.55612 * 17 16 15 19 19 C 1.38881 * 118.87933 * 0.08986 * 18 17 16 20 20 C 1.37748 * 120.77954 * 359.43916 * 19 18 17 21 21 C 1.51641 * 107.04798 * 179.03850 * 19 18 17 22 22 C 1.54711 * 101.94256 * 344.85953 * 21 19 18 23 23 O 1.36137 * 129.89733 * 180.66484 * 18 17 16 24 24 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 25 25 H 0.97005 * 119.99855 * 359.97438 * 1 2 3 26 26 H 0.96699 * 114.00154 * 60.67426 * 10 9 7 27 27 H 1.09002 * 110.32715 * 237.89677 * 11 9 7 28 28 H 1.08998 * 110.32251 * 0.02562 * 11 9 7 29 29 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 30 30 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 31 31 H 1.09003 * 109.47294 * 174.49077 * 14 13 12 32 32 H 1.09000 * 109.47223 * 294.49440 * 14 13 12 33 33 H 1.07998 * 119.82243 * 359.78516 * 16 15 14 34 34 H 1.08007 * 119.87852 * 180.26083 * 17 16 15 35 35 H 1.08004 * 120.00573 * 180.35650 * 20 19 18 36 36 H 1.08999 * 110.94055 * 103.01944 * 21 19 18 37 37 H 1.08997 * 110.93588 * 226.70472 * 21 19 18 38 38 H 1.08993 * 110.74974 * 266.91082 * 22 21 19 39 39 H 1.08993 * 110.90800 * 143.61962 * 22 21 19 40 40 H 1.08999 * 110.41133 * 201.79165 * 24 13 12 41 41 H 1.09001 * 110.41003 * 79.35561 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4343 -2.5997 1.1690 11 6 0.3848 -2.6178 -1.2703 12 6 0.9159 -3.8672 -2.0054 13 7 2.3118 -4.0222 -1.5164 14 6 2.7896 -5.3972 -1.7135 15 6 2.6248 -5.7836 -3.1609 16 6 1.4543 -6.3815 -3.5906 17 6 1.2946 -6.7282 -4.9160 18 6 2.3167 -6.4895 -5.8315 19 6 3.4928 -5.9007 -5.3855 20 6 3.6464 -5.5464 -4.0632 21 6 4.4163 -5.7894 -6.5831 22 6 3.7381 -6.7383 -7.5996 23 8 2.3662 -6.7371 -7.1693 24 6 2.2333 -3.6880 -0.0709 25 1 -0.4850 0.8401 0.0004 26 1 -0.2326 -1.9035 1.2438 27 1 -0.6633 -2.7528 -1.0030 28 1 0.5050 -1.7323 -1.8944 29 1 0.3224 -4.7432 -1.7435 30 1 0.9044 -3.7076 -3.0835 31 1 3.8426 -5.4590 -1.4386 32 1 2.2103 -6.0764 -1.0880 33 1 0.6593 -6.5741 -2.8854 34 1 0.3756 -7.1910 -5.2441 35 1 4.5641 -5.0841 -3.7310 36 1 4.4421 -4.7675 -6.9615 37 1 5.4192 -6.1369 -6.3352 38 1 4.1622 -7.7403 -7.5349 39 1 3.8251 -6.3483 -8.6136 40 1 3.2133 -3.3946 0.3052 41 1 1.8462 -4.5355 0.4947 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592522031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:25 Heat of formation + Delta-G solvation = -67.202904 kcal Electronic energy + Delta-G solvation = -23026.144480 eV Core-core repulsion = 19677.385861 eV Total energy + Delta-G solvation = -3348.758619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.02440 -40.26764 -38.57553 -36.47333 -34.13924 -33.60879 -32.82396 -30.41190 -30.20430 -29.50579 -26.98629 -25.55847 -24.36098 -22.97951 -22.25011 -21.44726 -21.18321 -19.01781 -18.33503 -17.66740 -17.21613 -16.95634 -16.79074 -16.19852 -15.97509 -15.70042 -15.03146 -14.77386 -14.71784 -14.13665 -14.09843 -14.03181 -13.84041 -13.54816 -13.30548 -13.18597 -12.93870 -12.66187 -12.60134 -12.44702 -12.31079 -12.16851 -12.02384 -11.82092 -11.72134 -11.58797 -10.94608 -10.58039 -10.11748 -9.82112 -9.38421 -8.95940 -8.17304 -6.29992 0.29932 0.39684 1.43061 1.43476 1.51291 2.34770 2.42089 2.63401 3.05407 3.30641 3.48877 3.65819 3.85802 3.97834 4.00089 4.16290 4.18189 4.30570 4.34424 4.37620 4.42502 4.52888 4.61712 4.68144 4.69949 4.75634 4.84733 4.89623 4.90997 5.06175 5.16587 5.25521 5.28067 5.38604 5.41912 5.62278 5.65369 5.68798 5.79158 5.98674 6.17856 6.23313 6.28113 6.74620 7.37906 7.45854 8.88371 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022894 B = 0.003858 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.738632 B = 7255.473029 C = 7748.062573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.957 3.043 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.052 0.948 9 C 0.232 3.768 10 O -0.602 6.602 11 C -0.113 4.113 12 C 0.050 3.950 13 N -0.503 5.503 14 C 0.088 3.912 15 C -0.109 4.109 16 C -0.082 4.082 17 C -0.146 4.146 18 C 0.083 3.917 19 C -0.185 4.185 20 C -0.059 4.059 21 C -0.107 4.107 22 C 0.047 3.953 23 O -0.326 6.326 24 C 0.061 3.939 25 H 0.267 0.733 26 H 0.376 0.624 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.129 0.871 40 H 0.073 0.927 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.834 -13.855 -12.518 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.581 4.581 8 H 0.071 0.929 9 C 0.193 3.807 10 O -0.410 6.410 11 C -0.152 4.152 12 C -0.077 4.077 13 N -0.228 5.228 14 C -0.039 4.039 15 C -0.110 4.110 16 C -0.101 4.101 17 C -0.164 4.164 18 C 0.038 3.962 19 C -0.186 4.186 20 C -0.077 4.077 21 C -0.144 4.144 22 C -0.027 4.027 23 O -0.241 6.241 24 C -0.067 4.067 25 H 0.076 0.924 26 H 0.226 0.774 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.151 0.849 36 H 0.112 0.888 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.147 0.853 40 H 0.091 0.909 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.276 -13.971 -12.859 20.334 hybrid contribution -0.674 1.161 0.487 1.428 sum 6.602 -12.810 -12.372 18.993 Atomic orbital electron populations 1.69774 1.06764 1.27982 1.51107 1.25669 0.95806 1.02153 0.93778 0.85635 0.78465 0.79038 0.78601 1.20053 1.20697 1.19855 1.21853 0.93337 0.91932 1.50990 0.92929 1.19522 0.87045 0.92330 0.81846 1.86075 1.52116 1.55449 1.47377 1.22642 0.97664 0.96278 0.98649 1.22985 0.88846 0.96784 0.99120 1.65453 1.21348 1.22832 1.13164 1.21215 1.01955 0.88519 0.92254 1.19656 0.94810 1.01019 0.95493 1.20939 0.97021 0.97159 0.94965 1.20382 0.99350 1.05302 0.91412 1.19785 0.95949 0.96446 0.84013 1.21075 0.97591 1.03970 0.95918 1.20323 0.99350 0.97181 0.90870 1.21874 0.99613 1.01783 0.91142 1.24123 0.77611 1.00852 1.00070 1.86790 1.30348 1.87929 1.19056 1.22849 0.99172 0.96318 0.88348 0.92369 0.77413 0.94087 0.93824 0.93620 0.91313 0.88914 0.93355 0.84562 0.84350 0.84877 0.88809 0.87050 0.89154 0.85334 0.90865 0.94359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.27 10.81 21.45 0.23 -50.03 16 2 C 0.03 1.38 5.02 84.66 0.43 1.81 16 3 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.54 -29.98 8.10 25.60 0.21 -29.77 16 8 H 0.05 2.92 7.54 -2.91 -0.02 2.89 16 9 C 0.23 11.79 1.05 -10.65 -0.01 11.78 16 10 O -0.60 -32.02 12.94 -148.98 -1.93 -33.95 16 11 C -0.11 -5.45 5.54 31.49 0.17 -5.27 16 12 C 0.05 1.97 4.97 86.42 0.43 2.40 16 13 N -0.50 -19.25 5.48 -885.57 -4.85 -24.11 16 14 C 0.09 2.61 5.23 85.56 0.45 3.05 16 15 C -0.11 -3.03 4.66 -19.83 -0.09 -3.12 16 16 C -0.08 -2.14 8.38 22.21 0.19 -1.96 16 17 C -0.15 -3.70 10.06 22.45 0.23 -3.48 16 18 C 0.08 2.16 7.03 22.67 0.16 2.32 16 19 C -0.18 -4.48 6.27 -19.53 -0.12 -4.61 16 20 C -0.06 -1.53 9.70 22.18 0.22 -1.32 16 21 C -0.11 -1.77 7.12 30.73 0.22 -1.55 16 22 C 0.05 0.70 8.01 72.57 0.58 1.28 16 23 O -0.33 -7.82 11.11 -95.11 -1.06 -8.87 16 24 C 0.06 2.63 5.78 86.45 0.50 3.13 16 25 H 0.27 14.02 8.31 -92.70 -0.77 13.25 16 26 H 0.38 20.46 7.32 -74.06 -0.54 19.92 16 27 H 0.04 1.98 7.98 -2.39 -0.02 1.96 16 28 H 0.04 2.32 7.24 -2.39 -0.02 2.30 16 29 H 0.05 1.62 7.15 -2.38 -0.02 1.61 16 30 H 0.07 2.65 7.76 -2.39 -0.02 2.63 16 31 H 0.09 2.50 8.09 -2.39 -0.02 2.48 16 32 H 0.05 1.36 7.82 -2.39 -0.02 1.34 16 33 H 0.14 3.22 7.42 -2.91 -0.02 3.20 16 34 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 35 H 0.13 3.19 8.06 -2.91 -0.02 3.16 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 37 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.13 1.22 8.14 -2.39 -0.02 1.21 16 40 H 0.07 3.18 7.68 -2.39 -0.02 3.16 16 41 H 0.04 1.58 7.76 -2.39 -0.02 1.56 16 Total: -1.00 -62.66 328.85 -1.54 -64.21 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.49 Total: 32.62 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 3.54 Total: -25.29 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -4.62 Total: -74.14 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -2.98 Total: -42.82 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -62.66 -1.54 -64.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.997 kcal (2) G-P(sol) polarization free energy of solvation -62.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds