Wall clock time and date at job start Tue Mar 31 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 111.00007 * 2 1 4 4 C 1.50701 * 109.46917 * 71.63516 * 3 2 1 5 5 C 1.28869 * 121.24956 * 263.72747 * 4 3 2 6 6 C 1.51425 * 117.49920 * 180.02562 * 5 4 3 7 7 S 1.83843 * 102.54069 * 16.28385 * 6 5 4 8 8 C 1.51431 * 121.24976 * 83.44681 * 4 3 2 9 9 C 1.46901 * 110.99848 * 236.05075 * 2 1 3 10 10 C 1.50705 * 109.46895 * 293.95406 * 9 2 1 11 11 C 1.38633 * 119.74529 * 269.72237 * 10 9 2 12 12 C 1.37617 * 120.24403 * 180.28063 * 11 10 9 13 13 C 1.40711 * 119.74912 * 0.02562 * 12 11 10 14 14 C 1.41393 * 120.24964 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00394 * 209.20938 * 14 13 12 16 16 C 1.39944 * 119.99660 * 29.19955 * 14 13 12 17 17 N 1.30816 * 120.00294 * 10.48846 * 16 14 13 18 18 Si 1.86801 * 119.99795 * 190.48441 * 16 14 13 19 19 H 1.48494 * 109.47452 * 60.00465 * 18 16 14 20 20 H 1.48506 * 109.47219 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47217 * 299.99981 * 18 16 14 22 22 C 1.40716 * 119.51013 * 359.97438 * 13 12 11 23 23 C 1.37624 * 119.74506 * 359.97438 * 22 13 12 24 24 H 1.08994 * 109.47270 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46551 * 299.92455 * 1 2 3 26 26 H 1.09000 * 109.47337 * 59.91510 * 1 2 3 27 27 H 1.09001 * 109.46856 * 191.63188 * 3 2 1 28 28 H 1.08994 * 109.47152 * 311.63279 * 3 2 1 29 29 H 1.07998 * 121.25530 * 359.97438 * 5 4 3 30 30 H 1.09001 * 110.80055 * 134.54382 * 6 5 4 31 31 H 1.09000 * 110.79525 * 257.82783 * 6 5 4 32 32 H 1.09000 * 110.79497 * 281.97071 * 8 4 3 33 33 H 1.09000 * 110.79449 * 45.45083 * 8 4 3 34 34 H 1.08999 * 109.47664 * 173.95302 * 9 2 1 35 35 H 1.09001 * 109.47147 * 53.94904 * 9 2 1 36 36 H 1.08002 * 119.87869 * 0.25965 * 11 10 9 37 37 H 1.08005 * 120.12320 * 180.02562 * 12 11 10 38 38 H 0.97007 * 120.00204 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.12865 * 179.97438 * 22 13 12 40 40 H 1.08000 * 119.87704 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7575 2.0008 1.3485 5 6 0.7341 2.7539 1.5636 6 6 0.5784 3.3428 2.9499 7 16 2.2540 3.1146 3.6711 8 6 2.7087 1.7670 2.5034 9 6 1.9954 -0.7659 -1.1377 10 6 1.6368 -2.2204 -0.9730 11 6 2.5028 -3.0707 -0.3029 12 6 2.1883 -4.4019 -0.1517 13 6 0.9829 -4.8990 -0.6806 14 6 0.6494 -6.2650 -0.5318 15 1 0.0363 -6.7551 -1.2735 16 6 1.1142 -6.9819 0.5766 17 7 1.6789 -6.3510 1.5738 18 14 0.9280 -8.8397 0.6322 19 1 1.6515 -9.4443 -0.5149 20 1 1.4955 -9.3563 1.9037 21 1 -0.5115 -9.1956 0.5527 22 6 0.1116 -4.0266 -1.3588 23 6 0.4460 -2.6989 -1.4972 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5127 0.8907 26 1 -0.3634 0.5151 -0.8892 27 1 3.0654 1.3499 -0.2072 28 1 1.4883 1.9553 -0.7681 29 1 0.0150 2.9581 0.7842 30 1 0.3218 4.4007 2.8945 31 1 -0.1701 2.7942 3.5216 32 1 2.5388 0.7884 2.9525 33 1 3.7441 1.8707 2.1790 34 1 3.0797 -0.6611 -1.1758 35 1 1.5610 -0.3871 -2.0628 36 1 3.4278 -2.6871 0.1015 37 1 2.8642 -5.0625 0.3710 38 1 2.0007 -6.8479 2.3423 39 1 -0.8161 -4.3976 -1.7690 40 1 -0.2209 -2.0275 -2.0177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595890179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:31 Heat of formation + Delta-G solvation = 38.191187 kcal Electronic energy + Delta-G solvation = -19983.194435 eV Core-core repulsion = 17081.758918 eV Total energy + Delta-G solvation = -2901.435517 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.69600 -37.49056 -35.60408 -33.55653 -30.63601 -29.67797 -29.21816 -27.46454 -27.23877 -25.45570 -23.73421 -21.55271 -20.96352 -19.72859 -18.47476 -17.27959 -16.77960 -15.62552 -15.45451 -15.34093 -14.78048 -14.54554 -14.25937 -13.86013 -13.51438 -13.36821 -13.07207 -12.72188 -12.46205 -12.09882 -11.96943 -11.79939 -11.64325 -11.52610 -11.36739 -11.17541 -11.05401 -10.86566 -10.56711 -10.48883 -10.37161 -9.62192 -9.35722 -9.24116 -9.15941 -8.04815 -7.85719 -7.44621 -7.23909 -6.69108 -4.36739 1.70004 1.76972 2.18528 2.76107 3.05408 3.07750 3.10095 3.17809 3.94874 4.27641 4.43198 4.58922 4.74717 5.01270 5.16406 5.21848 5.28243 5.41880 5.53391 5.55080 5.58322 5.67391 5.72199 5.87360 5.99058 6.09740 6.18051 6.31625 6.36824 6.42158 6.52232 6.94524 7.08922 7.26996 7.29750 7.35935 7.41178 7.62207 7.85440 8.06375 8.12262 8.31054 8.65633 8.91043 8.97696 10.24799 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.023324 B = 0.003259 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.200525 B = 8590.542553 C = 9214.382031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.529 5.529 3 C 0.096 3.904 4 C -0.098 4.098 5 C -0.171 4.171 6 C -0.035 4.035 7 S -0.306 6.306 8 C -0.023 4.023 9 C 0.120 3.880 10 C -0.203 4.203 11 C -0.082 4.082 12 C -0.159 4.159 13 C 0.112 3.888 14 C -0.466 4.466 15 H 0.075 0.925 16 C 0.074 3.926 17 N -0.801 5.801 18 Si 0.910 3.090 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.223 4.223 23 C -0.087 4.087 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.016 0.984 27 H 0.081 0.919 28 H 0.041 0.959 29 H 0.133 0.867 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.024 0.976 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.280 0.720 39 H 0.090 0.910 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.058 14.312 -0.089 14.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.253 5.253 3 C -0.033 4.033 4 C -0.100 4.100 5 C -0.191 4.191 6 C -0.182 4.182 7 S -0.079 6.079 8 C -0.171 4.171 9 C -0.006 4.006 10 C -0.205 4.205 11 C -0.101 4.101 12 C -0.179 4.179 13 C 0.110 3.890 14 C -0.496 4.496 15 H 0.093 0.907 16 C -0.143 4.143 17 N -0.427 5.427 18 Si 0.735 3.265 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.243 4.243 23 C -0.106 4.106 24 H 0.102 0.898 25 H 0.077 0.923 26 H 0.034 0.966 27 H 0.100 0.900 28 H 0.059 0.941 29 H 0.151 0.849 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.822 14.597 1.535 14.701 hybrid contribution -1.091 -1.001 -1.391 2.032 sum -0.269 13.596 0.145 13.600 Atomic orbital electron populations 1.22445 0.87516 1.03388 0.99096 1.62071 1.08113 1.10358 1.44765 1.20973 1.00950 0.89821 0.91535 1.21408 0.95927 0.96477 0.96190 1.22446 0.98938 1.00775 0.96918 1.23043 0.95544 1.04429 0.95194 1.88011 1.19630 1.49755 1.50538 1.23082 1.01894 0.99012 0.93063 1.20793 0.98434 0.91986 0.89372 1.18844 0.98620 0.92793 1.10220 1.20504 0.97621 0.94002 0.97966 1.21356 0.97720 0.94305 1.04500 1.17625 0.89846 0.92791 0.88742 1.19546 1.28670 0.94899 1.06472 0.90697 1.25873 0.92997 1.00678 0.94734 1.69784 1.29879 1.37692 1.05305 0.86345 0.79559 0.82322 0.78309 1.18952 1.20360 1.19116 1.20997 0.99969 0.93222 1.10075 1.20351 0.95447 0.95081 0.99731 0.89776 0.92270 0.96586 0.90019 0.94081 0.84950 0.87817 0.88160 0.87110 0.87571 0.91570 0.95793 0.89481 0.86375 0.90936 0.89164 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 8.95 60.06 0.54 0.89 16 2 N -0.53 -8.09 4.70 -245.82 -1.16 -9.24 16 3 C 0.10 1.17 5.24 -4.97 -0.03 1.14 16 4 C -0.10 -1.14 4.98 -100.14 -0.50 -1.63 16 5 C -0.17 -1.77 8.74 -35.10 -0.31 -2.08 16 6 C -0.03 -0.34 7.46 36.36 0.27 -0.07 16 7 S -0.31 -3.71 23.55 -107.50 -2.53 -6.25 16 8 C -0.02 -0.27 7.32 36.36 0.27 -0.01 16 9 C 0.12 1.99 5.10 -4.97 -0.03 1.97 16 10 C -0.20 -4.21 4.91 -104.33 -0.51 -4.72 16 11 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 12 C -0.16 -4.09 8.66 -38.87 -0.34 -4.42 16 13 C 0.11 2.96 5.55 -106.83 -0.59 2.37 16 14 C -0.47 -12.32 9.06 -37.74 -0.34 -12.66 16 15 H 0.07 1.90 7.87 -52.49 -0.41 1.49 16 16 C 0.07 1.86 5.26 -17.35 -0.09 1.77 16 17 N -0.80 -20.81 10.86 55.55 0.60 -20.20 16 18 Si 0.91 18.76 29.57 -169.99 -5.03 13.73 16 19 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 C -0.22 -5.37 9.80 -38.87 -0.38 -5.75 16 23 C -0.09 -1.87 7.86 -39.66 -0.31 -2.18 16 24 H 0.08 1.49 5.87 -51.93 -0.30 1.18 16 25 H 0.06 0.82 6.69 -51.93 -0.35 0.47 16 26 H 0.02 0.21 8.11 -51.93 -0.42 -0.21 16 27 H 0.08 0.92 7.82 -51.93 -0.41 0.52 16 28 H 0.04 0.46 7.93 -51.93 -0.41 0.05 16 29 H 0.13 1.21 8.05 -52.49 -0.42 0.78 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 33 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.03 7.80 -51.93 -0.41 0.62 16 35 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 36 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.12 3.16 6.25 -52.48 -0.33 2.83 16 38 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 39 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16 40 H 0.08 1.57 7.96 -52.49 -0.42 1.15 16 LS Contribution 337.95 15.07 5.09 5.09 Total: -1.00 -27.15 337.95 -11.72 -38.87 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.97 Total: 5.64 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -2.73 Total: -27.64 kcal Atomic # 7 Polarization: -28.89 SS G_CDS: -0.55 Total: -29.45 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -2.53 Total: -6.25 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.15 -11.72 -38.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595890179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.060 kcal (2) G-P(sol) polarization free energy of solvation -27.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds