Wall clock time and date at job start Tue Mar 31 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 111.00007 * 2 1 4 4 C 1.50701 * 109.46917 * 71.63516 * 3 2 1 5 5 C 1.28869 * 121.24956 * 263.72747 * 4 3 2 6 6 C 1.51425 * 117.49920 * 180.02562 * 5 4 3 7 7 S 1.83843 * 102.54069 * 16.28385 * 6 5 4 8 8 C 1.51431 * 121.24976 * 83.44681 * 4 3 2 9 9 C 1.46901 * 110.99848 * 236.05075 * 2 1 3 10 10 C 1.50705 * 109.46895 * 293.95406 * 9 2 1 11 11 C 1.38633 * 119.74529 * 269.72237 * 10 9 2 12 12 C 1.37617 * 120.24403 * 180.28063 * 11 10 9 13 13 C 1.40711 * 119.74912 * 0.02562 * 12 11 10 14 14 C 1.41393 * 120.24964 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00394 * 209.20938 * 14 13 12 16 16 C 1.39944 * 119.99660 * 29.19955 * 14 13 12 17 17 N 1.30816 * 120.00294 * 10.48846 * 16 14 13 18 18 Si 1.86801 * 119.99795 * 190.48441 * 16 14 13 19 19 H 1.48494 * 109.47452 * 60.00465 * 18 16 14 20 20 H 1.48506 * 109.47219 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47217 * 299.99981 * 18 16 14 22 22 C 1.40716 * 119.51013 * 359.97438 * 13 12 11 23 23 C 1.37624 * 119.74506 * 359.97438 * 22 13 12 24 24 H 1.08994 * 109.47270 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46551 * 299.92455 * 1 2 3 26 26 H 1.09000 * 109.47337 * 59.91510 * 1 2 3 27 27 H 1.09001 * 109.46856 * 191.63188 * 3 2 1 28 28 H 1.08994 * 109.47152 * 311.63279 * 3 2 1 29 29 H 1.07998 * 121.25530 * 359.97438 * 5 4 3 30 30 H 1.09001 * 110.80055 * 134.54382 * 6 5 4 31 31 H 1.09000 * 110.79525 * 257.82783 * 6 5 4 32 32 H 1.09000 * 110.79497 * 281.97071 * 8 4 3 33 33 H 1.09000 * 110.79449 * 45.45083 * 8 4 3 34 34 H 1.08999 * 109.47664 * 173.95302 * 9 2 1 35 35 H 1.09001 * 109.47147 * 53.94904 * 9 2 1 36 36 H 1.08002 * 119.87869 * 0.25965 * 11 10 9 37 37 H 1.08005 * 120.12320 * 180.02562 * 12 11 10 38 38 H 0.97007 * 120.00204 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.12865 * 179.97438 * 22 13 12 40 40 H 1.08000 * 119.87704 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7575 2.0008 1.3485 5 6 0.7341 2.7539 1.5636 6 6 0.5784 3.3428 2.9499 7 16 2.2540 3.1146 3.6711 8 6 2.7087 1.7670 2.5034 9 6 1.9954 -0.7659 -1.1377 10 6 1.6368 -2.2204 -0.9730 11 6 2.5028 -3.0707 -0.3029 12 6 2.1883 -4.4019 -0.1517 13 6 0.9829 -4.8990 -0.6806 14 6 0.6494 -6.2650 -0.5318 15 1 0.0363 -6.7551 -1.2735 16 6 1.1142 -6.9819 0.5766 17 7 1.6789 -6.3510 1.5738 18 14 0.9280 -8.8397 0.6322 19 1 1.6515 -9.4443 -0.5149 20 1 1.4955 -9.3563 1.9037 21 1 -0.5115 -9.1956 0.5527 22 6 0.1116 -4.0266 -1.3588 23 6 0.4460 -2.6989 -1.4972 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5127 0.8907 26 1 -0.3634 0.5151 -0.8892 27 1 3.0654 1.3499 -0.2072 28 1 1.4883 1.9553 -0.7681 29 1 0.0150 2.9581 0.7842 30 1 0.3218 4.4007 2.8945 31 1 -0.1701 2.7942 3.5216 32 1 2.5388 0.7884 2.9525 33 1 3.7441 1.8707 2.1790 34 1 3.0797 -0.6611 -1.1758 35 1 1.5610 -0.3871 -2.0628 36 1 3.4278 -2.6871 0.1015 37 1 2.8642 -5.0625 0.3710 38 1 2.0007 -6.8479 2.3423 39 1 -0.8161 -4.3976 -1.7690 40 1 -0.2209 -2.0275 -2.0177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595890179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:31 Heat of formation + Delta-G solvation = 25.245589 kcal Electronic energy + Delta-G solvation = -19983.755798 eV Core-core repulsion = 17081.758918 eV Total energy + Delta-G solvation = -2901.996880 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.00322 -38.91122 -36.82510 -35.31430 -32.23781 -31.19302 -30.52475 -28.87340 -28.34993 -26.76803 -25.07458 -22.87517 -22.77957 -21.36569 -19.33828 -19.17620 -17.71028 -17.15670 -16.69076 -16.57430 -16.04302 -15.76389 -15.49256 -15.41583 -15.08363 -14.49759 -14.21195 -14.05345 -13.78803 -13.70757 -13.43526 -13.00552 -12.94193 -12.77214 -12.69277 -12.64630 -12.35530 -12.31686 -12.12975 -12.00628 -11.46020 -11.37122 -11.18781 -11.03012 -10.09213 -9.29959 -9.24693 -9.01517 -8.80138 -8.55249 -6.33058 0.83593 0.87535 1.02434 1.18299 1.34565 1.38091 1.49516 1.53361 2.22506 2.74681 3.28837 3.55016 3.73021 3.82308 4.21769 4.22265 4.32375 4.37294 4.42056 4.44644 4.53243 4.56861 4.61175 4.61984 4.69022 4.75918 4.81744 4.88394 5.09746 5.15857 5.19540 5.28193 5.42123 5.49924 5.66569 5.75721 5.96807 6.12536 6.15757 6.28132 6.33513 6.43993 6.75628 6.98634 7.07890 8.40484 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.023324 B = 0.003259 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.200525 B = 8590.542553 C = 9214.382031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.546 5.546 3 C 0.103 3.897 4 C -0.117 4.117 5 C -0.157 4.157 6 C -0.027 4.027 7 S -0.348 6.348 8 C -0.017 4.017 9 C 0.125 3.875 10 C -0.186 4.186 11 C -0.089 4.089 12 C -0.184 4.184 13 C 0.078 3.922 14 C -0.506 4.506 15 H 0.072 0.928 16 C 0.032 3.968 17 N -0.836 5.836 18 Si 0.982 3.018 19 H -0.261 1.261 20 H -0.269 1.269 21 H -0.261 1.261 22 C -0.239 4.239 23 C -0.084 4.084 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.035 0.965 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.153 0.847 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.284 0.716 39 H 0.093 0.907 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.666 16.287 -0.871 16.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.270 5.270 3 C -0.026 4.026 4 C -0.119 4.119 5 C -0.177 4.177 6 C -0.174 4.174 7 S -0.122 6.122 8 C -0.165 4.165 9 C -0.001 4.001 10 C -0.187 4.187 11 C -0.108 4.108 12 C -0.203 4.203 13 C 0.076 3.924 14 C -0.536 4.536 15 H 0.090 0.910 16 C -0.181 4.181 17 N -0.463 5.463 18 Si 0.803 3.197 19 H -0.185 1.185 20 H -0.193 1.193 21 H -0.185 1.185 22 C -0.258 4.258 23 C -0.102 4.102 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.054 0.946 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.171 0.829 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.212 16.597 0.748 16.615 hybrid contribution -0.926 -1.378 -1.161 2.026 sum -0.714 15.219 -0.413 15.242 Atomic orbital electron populations 1.22363 0.87391 1.01717 1.00550 1.61905 1.08383 1.12586 1.44166 1.20966 1.01496 0.87935 0.92195 1.21381 0.96700 0.97858 0.95930 1.22689 0.98367 0.99255 0.97359 1.23180 0.93620 1.05951 0.94635 1.88165 1.22203 1.50089 1.51703 1.23016 1.02668 0.97736 0.93041 1.20715 0.99526 0.89179 0.90704 1.19319 0.97191 0.95121 1.07101 1.20748 0.98734 0.93235 0.98075 1.21297 0.97753 0.95497 1.05768 1.17951 0.90742 0.93598 0.90147 1.19796 1.30459 0.95836 1.07548 0.90997 1.26708 0.92242 1.05373 0.93823 1.69863 1.30989 1.39513 1.05934 0.85256 0.79665 0.76164 0.78602 1.18490 1.19348 1.18548 1.21206 0.99998 0.94402 1.10213 1.20654 0.96060 0.94348 0.99161 0.92944 0.91304 0.94618 0.89238 0.92285 0.82936 0.85623 0.87478 0.88930 0.86896 0.90252 0.94011 0.87919 0.88547 0.90507 0.88832 0.86883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 8.95 127.69 1.14 1.89 16 2 N -0.55 -15.03 4.70 -931.64 -4.38 -19.41 16 3 C 0.10 2.11 5.24 85.56 0.45 2.55 16 4 C -0.12 -2.37 4.98 -14.13 -0.07 -2.44 16 5 C -0.16 -2.70 8.74 28.00 0.24 -2.45 16 6 C -0.03 -0.45 7.46 71.47 0.53 0.08 16 7 S -0.35 -8.02 23.55 -56.49 -1.33 -9.35 16 8 C -0.02 -0.39 7.32 71.47 0.52 0.14 16 9 C 0.13 3.75 5.10 85.56 0.44 4.18 16 10 C -0.19 -7.43 4.91 -19.67 -0.10 -7.52 16 11 C -0.09 -4.07 9.67 22.22 0.21 -3.85 16 12 C -0.18 -9.78 8.66 22.73 0.20 -9.58 16 13 C 0.08 4.26 5.55 -21.29 -0.12 4.14 16 14 C -0.51 -27.95 9.06 23.46 0.21 -27.74 16 15 H 0.07 3.83 7.87 -2.91 -0.02 3.80 16 16 C 0.03 1.64 5.26 85.26 0.45 2.09 16 17 N -0.84 -45.20 10.86 21.83 0.24 -44.96 16 18 Si 0.98 39.35 29.57 68.60 2.03 41.37 16 19 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 20 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 22 C -0.24 -11.65 9.80 22.73 0.22 -11.43 16 23 C -0.08 -3.48 7.86 22.22 0.17 -3.31 16 24 H 0.05 1.74 5.87 -2.39 -0.01 1.73 16 25 H 0.07 1.69 6.69 -2.38 -0.02 1.68 16 26 H 0.04 0.81 8.11 -2.39 -0.02 0.79 16 27 H 0.09 1.70 7.82 -2.39 -0.02 1.69 16 28 H 0.06 1.04 7.93 -2.39 -0.02 1.02 16 29 H 0.15 2.05 8.05 -2.91 -0.02 2.02 16 30 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.08 2.19 7.80 -2.39 -0.02 2.17 16 35 H 0.04 1.13 8.06 -2.39 -0.02 1.11 16 36 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 37 H 0.10 5.46 6.25 -2.91 -0.02 5.44 16 38 H 0.28 14.04 8.30 -92.70 -0.77 13.27 16 39 H 0.09 4.36 8.06 -2.91 -0.02 4.34 16 40 H 0.11 3.98 7.96 -2.91 -0.02 3.96 16 Total: -1.00 -60.93 337.95 2.08 -58.84 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 1.01 Total: 26.75 kcal Atomic # 6 Polarization: -57.77 SS G_CDS: 4.51 Total: -53.25 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -4.14 Total: -64.37 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.37 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -1.33 Total: -9.35 kcal Total: -60.93 2.08 -58.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595890179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.089 kcal (2) G-P(sol) polarization free energy of solvation -60.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds