Wall clock time and date at job start Tue Mar 31 2020 06:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00200 * 2 1 4 4 H 1.48497 * 109.46718 * 240.00074 * 3 2 1 5 5 H 1.48496 * 109.46975 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46958 * 120.00205 * 3 2 1 7 7 C 1.37875 * 119.99561 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99933 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00416 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47255 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47209 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47558 * 179.97438 * 11 10 9 13 13 C 1.34767 * 120.00364 * 179.97438 * 12 11 10 14 14 O 1.21557 * 119.99994 * 0.02562 * 13 12 11 15 15 C 1.47846 * 120.00379 * 180.02562 * 13 12 11 16 16 C 1.39609 * 120.22292 * 0.27743 * 15 13 12 17 17 C 1.37745 * 119.74505 * 180.38720 * 16 15 13 18 18 C 1.38809 * 120.50972 * 359.46087 * 17 16 15 19 19 C 1.38076 * 119.99591 * 0.04154 * 18 17 16 20 20 C 1.38337 * 120.02829 * 0.33123 * 19 18 17 21 21 C 1.50776 * 121.33293 * 180.58395 * 19 18 17 22 22 C 1.52961 * 109.76410 * 342.65702 * 21 19 18 23 23 O 1.43200 * 108.46085 * 49.33172 * 22 21 19 24 24 C 1.42700 * 113.17215 * 289.31493 * 23 22 21 25 25 H 0.97005 * 119.99412 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47339 * 59.99548 * 9 7 2 27 27 H 1.09003 * 109.46463 * 299.99809 * 9 7 2 28 28 H 1.08995 * 109.47621 * 59.99347 * 10 9 7 29 29 H 1.09008 * 109.47091 * 299.99572 * 10 9 7 30 30 H 1.09003 * 109.46958 * 59.99615 * 11 10 9 31 31 H 1.09000 * 109.47574 * 299.99907 * 11 10 9 32 32 H 0.97006 * 119.99423 * 0.02562 * 12 11 10 33 33 H 1.08003 * 120.12557 * 0.11540 * 16 15 13 34 34 H 1.08002 * 119.74844 * 179.74737 * 17 16 15 35 35 H 1.08004 * 119.91179 * 179.81188 * 20 19 18 36 36 H 1.09002 * 109.42166 * 102.74520 * 21 19 18 37 37 H 1.08999 * 109.42255 * 222.62414 * 21 19 18 38 38 H 1.09001 * 109.63818 * 169.02905 * 22 21 19 39 39 H 1.09001 * 109.63470 * 289.64478 * 22 21 19 40 40 H 1.09004 * 109.33259 * 291.56793 * 24 23 22 41 41 H 1.08996 * 109.33431 * 172.07125 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4801 -4.9871 -0.0020 12 7 2.4320 -6.1007 -0.0024 13 6 1.9828 -7.3713 -0.0024 14 8 0.7877 -7.5934 -0.0025 15 6 2.9434 -8.4951 -0.0022 16 6 4.3170 -8.2455 0.0038 17 6 5.2033 -9.2999 -0.0041 18 6 4.7412 -10.6088 -0.0068 19 6 3.3838 -10.8617 -0.0024 20 6 2.4839 -9.8111 -0.0021 21 6 2.8490 -12.2714 0.0080 22 6 3.9493 -13.2453 -0.4170 23 8 5.1271 -12.9596 0.3458 24 6 5.7493 -11.7290 -0.0217 25 1 -0.4849 0.8401 -0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6240 -2.5574 0.8881 28 1 2.8712 -3.6048 0.8889 29 1 2.8725 -3.6040 -0.8910 30 1 0.8538 -5.0446 -0.8923 31 1 0.8531 -5.0450 0.8877 32 1 3.3858 -5.9234 -0.0019 33 1 4.6833 -7.2295 0.0103 34 1 6.2659 -9.1068 -0.0036 35 1 1.4225 -10.0111 -0.0017 36 1 2.5104 -12.5232 1.0131 37 1 2.0118 -12.3465 -0.6859 38 1 3.6272 -14.2686 -0.2242 39 1 4.1607 -13.1184 -1.4787 40 1 6.1703 -11.8224 -1.0228 41 1 6.5491 -11.5042 0.6838 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597150456.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:15 Heat of formation + Delta-G solvation = -78.877449 kcal Electronic energy + Delta-G solvation = -21528.920757 eV Core-core repulsion = 18179.655892 eV Total energy + Delta-G solvation = -3349.264865 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.78921 -39.45540 -37.54663 -35.48164 -33.64588 -33.23569 -32.27721 -31.04409 -29.80040 -27.30154 -25.90479 -24.33360 -23.42874 -22.39769 -21.60738 -20.64506 -19.52264 -17.81784 -17.07631 -16.67679 -16.25016 -16.06166 -15.66784 -15.35849 -15.03851 -14.62441 -14.42245 -14.18805 -14.00799 -13.71833 -13.65859 -13.21065 -12.70894 -12.56974 -12.28408 -11.95561 -11.86354 -11.65235 -11.42188 -11.11987 -10.90032 -10.75457 -10.64578 -10.22968 -9.95029 -9.89208 -9.42008 -9.15134 -9.13754 -9.03101 -8.76276 -8.38516 -6.03173 -4.06512 0.56600 1.02636 2.73523 3.27865 3.30948 3.35851 3.37901 3.41933 3.64192 4.21399 4.22622 4.42516 4.43028 4.57415 4.73369 4.77412 4.86545 4.91532 5.02507 5.12550 5.24485 5.32470 5.37183 5.44495 5.59860 5.63733 5.71249 5.74345 5.96567 6.06772 6.12171 6.14266 6.41782 6.54280 6.56400 6.63957 6.79286 6.96931 7.61253 7.63942 7.73871 7.95166 8.29719 8.36686 8.99810 9.57649 11.08062 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.042718 B = 0.002320 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.302948 B =12066.482740 C =12665.553392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.719 5.719 13 C 0.551 3.449 14 O -0.540 6.540 15 C -0.124 4.124 16 C -0.088 4.088 17 C -0.118 4.118 18 C -0.102 4.102 19 C -0.084 4.084 20 C -0.058 4.058 21 C -0.116 4.116 22 C 0.058 3.942 23 O -0.375 6.375 24 C 0.100 3.900 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.398 0.602 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.764 -25.940 -1.127 28.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.370 5.370 13 C 0.337 3.663 14 O -0.419 6.419 15 C -0.128 4.128 16 C -0.106 4.106 17 C -0.136 4.136 18 C -0.103 4.103 19 C -0.084 4.084 20 C -0.077 4.077 21 C -0.153 4.153 22 C -0.018 4.018 23 O -0.294 6.294 24 C 0.023 3.977 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.232 0.768 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.797 -26.060 -0.981 28.226 hybrid contribution 0.757 1.459 -0.194 1.655 sum 11.554 -24.602 -1.175 27.205 Atomic orbital electron populations 1.69958 1.06061 1.26823 1.50403 1.25035 0.94874 0.99318 0.95255 0.86631 0.79554 0.83060 0.78584 1.20245 1.21260 1.20235 1.21159 0.92944 0.90936 1.51141 0.92697 1.19025 0.93836 0.90802 0.97699 1.21898 0.99815 0.93293 1.00908 1.21700 0.91837 0.84919 1.02209 1.46144 1.10933 1.05775 1.74147 1.18258 0.88083 0.82992 0.76959 1.90771 1.16202 1.84847 1.50071 1.20038 0.93582 0.94086 1.05047 1.21294 0.92112 0.99578 0.97645 1.20902 1.00036 0.91379 1.01283 1.20446 0.94450 0.95612 0.99744 1.19444 0.92407 0.95393 1.01128 1.21205 1.00450 0.90549 0.95494 1.21149 0.99152 0.91263 1.03708 1.22661 0.84811 0.99117 0.95245 1.88073 1.41358 1.38281 1.61643 1.21486 0.93278 0.81577 1.01360 0.92848 0.96237 0.96239 0.92678 0.92681 0.91548 0.91536 0.76752 0.85146 0.85117 0.84460 0.89365 0.89314 0.88074 0.92460 0.91373 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.36 5.27 -26.74 -0.14 -2.50 16 11 C 0.12 2.05 5.67 -4.04 -0.02 2.03 16 12 N -0.72 -10.59 5.51 -61.25 -0.34 -10.93 16 13 C 0.55 8.64 7.77 -12.33 -0.10 8.54 16 14 O -0.54 -10.45 16.35 5.32 0.09 -10.36 16 15 C -0.12 -1.56 5.87 -105.02 -0.62 -2.18 16 16 C -0.09 -0.87 9.54 -39.25 -0.37 -1.24 16 17 C -0.12 -0.99 9.65 -39.55 -0.38 -1.37 16 18 C -0.10 -0.91 5.82 -104.47 -0.61 -1.52 16 19 C -0.08 -0.82 5.77 -104.61 -0.60 -1.43 16 20 C -0.06 -0.68 9.22 -39.12 -0.36 -1.04 16 21 C -0.12 -0.86 6.00 -27.87 -0.17 -1.02 16 22 C 0.06 0.38 6.85 37.14 0.25 0.63 16 23 O -0.38 -3.23 10.80 -35.23 -0.38 -3.61 16 24 C 0.10 0.70 6.65 36.01 0.24 0.94 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.40 4.67 6.52 -40.82 -0.27 4.41 16 33 H 0.13 1.03 6.42 -52.48 -0.34 0.70 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.14 1.63 7.64 -52.48 -0.40 1.23 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.33 8.07 -51.93 -0.42 -0.09 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 342.74 15.07 5.17 5.17 Total: -1.00 -33.57 342.74 -9.21 -42.78 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.04 Total: -0.36 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -3.43 Total: -13.05 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.40 Total: -36.99 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.29 Total: -13.97 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.57 -9.21 -42.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597150456.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.093 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds