Wall clock time and date at job start Tue Mar 31 2020 06:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00200 * 2 1 4 4 H 1.48497 * 109.46718 * 240.00074 * 3 2 1 5 5 H 1.48496 * 109.46975 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46958 * 120.00205 * 3 2 1 7 7 C 1.37875 * 119.99561 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99933 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00416 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47255 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47209 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47558 * 179.97438 * 11 10 9 13 13 C 1.34767 * 120.00364 * 179.97438 * 12 11 10 14 14 O 1.21557 * 119.99994 * 0.02562 * 13 12 11 15 15 C 1.47846 * 120.00379 * 180.02562 * 13 12 11 16 16 C 1.39609 * 120.22292 * 0.27743 * 15 13 12 17 17 C 1.37745 * 119.74505 * 180.38720 * 16 15 13 18 18 C 1.38809 * 120.50972 * 359.46087 * 17 16 15 19 19 C 1.38076 * 119.99591 * 0.04154 * 18 17 16 20 20 C 1.38337 * 120.02829 * 0.33123 * 19 18 17 21 21 C 1.50776 * 121.33293 * 180.58395 * 19 18 17 22 22 C 1.52961 * 109.76410 * 342.65702 * 21 19 18 23 23 O 1.43200 * 108.46085 * 49.33172 * 22 21 19 24 24 C 1.42700 * 113.17215 * 289.31493 * 23 22 21 25 25 H 0.97005 * 119.99412 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47339 * 59.99548 * 9 7 2 27 27 H 1.09003 * 109.46463 * 299.99809 * 9 7 2 28 28 H 1.08995 * 109.47621 * 59.99347 * 10 9 7 29 29 H 1.09008 * 109.47091 * 299.99572 * 10 9 7 30 30 H 1.09003 * 109.46958 * 59.99615 * 11 10 9 31 31 H 1.09000 * 109.47574 * 299.99907 * 11 10 9 32 32 H 0.97006 * 119.99423 * 0.02562 * 12 11 10 33 33 H 1.08003 * 120.12557 * 0.11540 * 16 15 13 34 34 H 1.08002 * 119.74844 * 179.74737 * 17 16 15 35 35 H 1.08004 * 119.91179 * 179.81188 * 20 19 18 36 36 H 1.09002 * 109.42166 * 102.74520 * 21 19 18 37 37 H 1.08999 * 109.42255 * 222.62414 * 21 19 18 38 38 H 1.09001 * 109.63818 * 169.02905 * 22 21 19 39 39 H 1.09001 * 109.63470 * 289.64478 * 22 21 19 40 40 H 1.09004 * 109.33259 * 291.56793 * 24 23 22 41 41 H 1.08996 * 109.33431 * 172.07125 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4801 -4.9871 -0.0020 12 7 2.4320 -6.1007 -0.0024 13 6 1.9828 -7.3713 -0.0024 14 8 0.7877 -7.5934 -0.0025 15 6 2.9434 -8.4951 -0.0022 16 6 4.3170 -8.2455 0.0038 17 6 5.2033 -9.2999 -0.0041 18 6 4.7412 -10.6088 -0.0068 19 6 3.3838 -10.8617 -0.0024 20 6 2.4839 -9.8111 -0.0021 21 6 2.8490 -12.2714 0.0080 22 6 3.9493 -13.2453 -0.4170 23 8 5.1271 -12.9596 0.3458 24 6 5.7493 -11.7290 -0.0217 25 1 -0.4849 0.8401 -0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6240 -2.5574 0.8881 28 1 2.8712 -3.6048 0.8889 29 1 2.8725 -3.6040 -0.8910 30 1 0.8538 -5.0446 -0.8923 31 1 0.8531 -5.0450 0.8877 32 1 3.3858 -5.9234 -0.0019 33 1 4.6833 -7.2295 0.0103 34 1 6.2659 -9.1068 -0.0036 35 1 1.4225 -10.0111 -0.0017 36 1 2.5104 -12.5232 1.0131 37 1 2.0118 -12.3465 -0.6859 38 1 3.6272 -14.2686 -0.2242 39 1 4.1607 -13.1184 -1.4787 40 1 6.1703 -11.8224 -1.0228 41 1 6.5491 -11.5042 0.6838 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597150456.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:14 Heat of formation + Delta-G solvation = -100.534206 kcal Electronic energy + Delta-G solvation = -21529.859864 eV Core-core repulsion = 18179.655892 eV Total energy + Delta-G solvation = -3350.203972 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60887 -40.49367 -38.30248 -37.03616 -35.29082 -34.13333 -33.39972 -32.52361 -30.45712 -28.87786 -26.99243 -25.02553 -24.92933 -23.32738 -22.61344 -22.27955 -20.57001 -18.84321 -18.44456 -17.78226 -17.30485 -16.82125 -16.77890 -16.62426 -16.43592 -15.76310 -15.47784 -15.44992 -15.00549 -14.65380 -14.34273 -14.26666 -13.98244 -13.78009 -13.57488 -13.30806 -13.22828 -12.73144 -12.57309 -12.50308 -12.42772 -12.07735 -11.71173 -11.69760 -11.61797 -11.29286 -11.05849 -10.68692 -10.55507 -10.26221 -9.85975 -9.67539 -8.19962 -6.31740 -0.28459 0.28528 1.41531 1.44735 1.52571 1.71080 2.06781 2.42162 2.71898 2.93363 3.13711 3.51712 3.58558 3.75077 3.81659 4.02890 4.08382 4.17325 4.19002 4.26210 4.40910 4.45548 4.51313 4.54022 4.72523 4.80423 4.83463 4.90676 4.92396 4.93019 5.05915 5.14238 5.22327 5.28520 5.35242 5.43049 5.50376 5.68599 5.82210 5.82825 6.12601 6.20836 6.46481 6.85469 7.10517 7.37877 8.91982 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.042718 B = 0.002320 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.302948 B =12066.482740 C =12665.553392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.101 4.101 11 C 0.129 3.871 12 N -0.707 5.707 13 C 0.549 3.451 14 O -0.588 6.588 15 C -0.148 4.148 16 C -0.086 4.086 17 C -0.112 4.112 18 C -0.100 4.100 19 C -0.093 4.093 20 C -0.074 4.074 21 C -0.117 4.117 22 C 0.058 3.942 23 O -0.393 6.393 24 C 0.096 3.904 25 H 0.263 0.737 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.415 0.585 33 H 0.151 0.849 34 H 0.167 0.833 35 H 0.122 0.878 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.376 -26.651 -1.319 30.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.139 4.139 11 C 0.005 3.995 12 N -0.359 5.359 13 C 0.338 3.662 14 O -0.470 6.470 15 C -0.151 4.151 16 C -0.105 4.105 17 C -0.130 4.130 18 C -0.100 4.100 19 C -0.093 4.093 20 C -0.093 4.093 21 C -0.154 4.154 22 C -0.018 4.018 23 O -0.312 6.312 24 C 0.020 3.980 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.253 0.747 33 H 0.169 0.831 34 H 0.185 0.815 35 H 0.140 0.860 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.137 0.863 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 14.461 -26.785 -1.174 30.462 hybrid contribution -0.360 1.587 -0.135 1.633 sum 14.100 -25.198 -1.309 28.905 Atomic orbital electron populations 1.70113 1.07982 1.27872 1.51600 1.26051 0.95769 1.03646 0.94773 0.85448 0.78164 0.77809 0.79305 1.18956 1.21241 1.18967 1.21648 0.93786 0.91927 1.50585 0.91400 1.18942 0.94450 0.92982 0.95076 1.21604 0.98473 0.91526 1.02314 1.21301 0.91949 0.85407 1.00866 1.45880 1.11337 1.04821 1.73848 1.18804 0.88076 0.83710 0.75616 1.90739 1.18408 1.85510 1.52301 1.19846 0.94191 0.92908 1.08149 1.21534 0.90859 1.01256 0.96825 1.21297 1.01570 0.90549 0.99568 1.20852 0.94411 0.96818 0.97947 1.19704 0.92879 0.95870 1.00881 1.21216 1.00285 0.91131 0.96646 1.21215 0.99933 0.90320 1.03933 1.22795 0.83854 0.99663 0.95536 1.88054 1.41951 1.38836 1.62370 1.21709 0.92877 0.80325 1.03052 0.92814 0.98957 0.98997 0.91173 0.91124 0.93028 0.93078 0.74698 0.83124 0.81548 0.85975 0.89574 0.88507 0.86311 0.91536 0.89413 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.34 13.29 21.45 0.28 -57.05 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 3 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.02 1.21 4.97 29.85 0.15 1.36 16 10 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 11 C 0.13 4.66 5.67 86.38 0.49 5.15 16 12 N -0.71 -20.60 5.51 -465.98 -2.57 -23.16 16 13 C 0.55 17.62 7.77 86.79 0.67 18.30 16 14 O -0.59 -23.99 16.35 -3.90 -0.06 -24.05 16 15 C -0.15 -3.68 5.87 -20.13 -0.12 -3.80 16 16 C -0.09 -1.51 9.54 22.48 0.21 -1.30 16 17 C -0.11 -1.51 9.65 22.29 0.22 -1.29 16 18 C -0.10 -1.51 5.82 -19.76 -0.11 -1.63 16 19 C -0.09 -1.74 5.77 -19.86 -0.11 -1.86 16 20 C -0.07 -1.76 9.22 22.57 0.21 -1.56 16 21 C -0.12 -1.62 6.00 29.86 0.18 -1.44 16 22 C 0.06 0.63 6.85 71.97 0.49 1.12 16 23 O -0.39 -5.73 10.80 -148.98 -1.61 -7.34 16 24 C 0.10 1.03 6.65 71.24 0.47 1.50 16 25 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.41 9.00 6.52 -92.70 -0.60 8.40 16 33 H 0.15 1.91 6.42 -2.91 -0.02 1.89 16 34 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 35 H 0.12 3.17 7.64 -2.91 -0.02 3.15 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.60 8.07 -2.39 -0.02 0.58 16 40 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -74.77 342.74 2.10 -72.67 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.43 Total: 12.15 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 3.61 Total: -18.90 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -2.28 Total: -80.22 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -1.67 Total: -31.40 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -74.77 2.10 -72.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597150456.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.866 kcal (2) G-P(sol) polarization free energy of solvation -74.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds