Wall clock time and date at job start Tue Mar 31 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32588 * 119.27201 * 2 1 4 4 N 1.28436 * 124.10479 * 180.02562 * 3 2 1 5 5 C 1.34191 * 121.17870 * 359.97438 * 4 3 2 6 6 N 1.31846 * 135.22844 * 179.97438 * 5 4 3 7 7 N 1.39934 * 109.32566 * 179.81121 * 6 5 4 8 8 H 0.96996 * 125.00914 * 180.26442 * 7 6 5 9 9 C 1.34320 * 109.99237 * 0.37921 * 7 6 5 10 10 N 1.38855 * 126.20828 * 179.89640 * 9 7 6 11 11 C 1.34774 * 119.99672 * 359.68981 * 10 9 7 12 12 O 1.21291 * 120.00274 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47238 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47055 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00079 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99493 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99862 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47162 * 90.00212 * 19 17 15 21 21 H 1.48498 * 109.46805 * 210.00384 * 19 17 15 22 22 H 1.48494 * 109.47357 * 330.00050 * 19 17 15 23 23 C 1.38959 * 107.58625 * 359.63387 * 9 7 6 24 24 C 1.36523 * 119.27854 * 179.97438 * 2 1 3 25 25 C 1.50705 * 121.23618 * 0.02562 * 24 2 1 26 26 H 1.08995 * 109.47269 * 90.00539 * 1 2 3 27 27 H 1.09006 * 109.46580 * 209.99710 * 1 2 3 28 28 H 1.08993 * 109.47572 * 329.99869 * 1 2 3 29 29 H 0.96994 * 120.00572 * 179.69005 * 10 9 7 30 30 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 31 31 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 32 32 H 1.09001 * 109.46832 * 299.99686 * 14 13 11 33 33 H 1.09004 * 109.47261 * 59.99705 * 14 13 11 34 34 H 0.96999 * 119.99718 * 179.97438 * 18 17 15 35 35 H 1.09006 * 109.46410 * 269.97852 * 25 24 2 36 36 H 1.08997 * 109.47489 * 29.97671 * 25 24 2 37 37 H 1.09001 * 109.46896 * 149.98426 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1553 1.1566 0.0000 4 7 3.4351 1.2648 -0.0005 5 6 4.2241 0.1793 -0.0005 6 7 5.5255 -0.0319 -0.0013 7 7 5.7711 -1.4095 0.0035 8 1 6.6509 -1.8179 0.0076 9 6 4.6091 -2.0831 -0.0009 10 7 4.4614 -3.4638 -0.0001 11 6 5.5503 -4.2580 -0.0009 12 8 6.6593 -3.7667 -0.0017 13 6 5.3901 -5.7565 -0.0006 14 6 6.7702 -6.4170 -0.0010 15 6 6.6099 -7.9154 -0.0001 16 1 5.6225 -8.3529 0.0002 17 6 7.7239 -8.7279 -0.0008 18 7 8.9262 -8.1951 -0.0016 19 14 7.5252 -10.5853 -0.0004 20 1 7.4716 -11.0777 -1.4004 21 1 8.6786 -11.2063 0.6990 22 1 6.2675 -10.9485 0.7005 23 6 3.5815 -1.1477 -0.0002 24 6 2.1747 -1.1908 0.0005 25 6 1.4329 -2.5027 0.0005 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 3.5746 -3.8568 0.0010 30 1 4.8413 -6.0630 0.8898 31 1 4.8398 -6.0632 -0.8901 32 1 7.3194 -6.1105 -0.8912 33 1 7.3200 -6.1102 0.8888 34 1 9.7100 -8.7667 -0.0017 35 1 1.2541 -2.8188 1.0283 36 1 0.4794 -2.3810 -0.5133 37 1 2.0289 -3.2570 -0.5131 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597636692.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:34 Heat of formation + Delta-G solvation = 81.475207 kcal Electronic energy + Delta-G solvation = -22015.725036 eV Core-core repulsion = 18602.165992 eV Total energy + Delta-G solvation = -3413.559044 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.29720 -40.32934 -39.01112 -35.96254 -34.69680 -33.87254 -32.50665 -31.53858 -30.21407 -28.87491 -27.29027 -26.23701 -25.20180 -22.74025 -22.31909 -20.80317 -20.57726 -18.88252 -18.15370 -17.08826 -16.73441 -16.42873 -16.06266 -15.84723 -15.53667 -14.64743 -14.43742 -14.30410 -14.07212 -13.71596 -13.61077 -13.10311 -12.91946 -12.72208 -12.42657 -12.33383 -11.84005 -11.54070 -11.49676 -11.12132 -10.81361 -10.75840 -10.34814 -10.34037 -10.11983 -9.81982 -9.74985 -9.66622 -9.37897 -8.54819 -7.88934 -6.18277 -4.24570 -0.17202 1.15410 1.75153 1.85726 2.50713 2.70719 3.19665 3.26978 3.28335 3.47589 3.48749 3.98465 4.08144 4.27448 4.30413 4.53850 4.69397 4.74776 4.90314 5.01582 5.17729 5.26123 5.34294 5.36613 5.41759 5.58608 5.68993 5.70256 5.79958 5.95996 6.12688 6.36321 6.72229 6.82723 7.24790 7.44596 7.48755 7.63765 7.78030 8.12723 8.69001 8.82031 9.40975 10.92447 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.031786 B = 0.003139 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.681692 B = 8919.194499 C = 9768.824898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.037 4.037 3 N -0.159 5.159 4 N -0.202 5.202 5 C 0.219 3.781 6 N -0.277 5.277 7 N -0.386 5.386 8 H 0.462 0.538 9 C 0.387 3.613 10 N -0.648 5.648 11 C 0.515 3.485 12 O -0.511 6.511 13 C -0.126 4.126 14 C 0.035 3.965 15 C -0.534 4.534 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.887 5.887 19 Si 0.896 3.104 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.260 4.260 24 C 0.035 3.965 25 C -0.128 4.128 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.428 0.572 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.264 0.736 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.626 9.532 0.092 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.169 4.169 3 N -0.022 5.022 4 N -0.070 5.070 5 C -0.045 4.045 6 N -0.114 5.114 7 N -0.103 5.103 8 H 0.318 0.682 9 C 0.145 3.855 10 N -0.301 5.301 11 C 0.306 3.694 12 O -0.382 6.382 13 C -0.166 4.166 14 C -0.002 4.002 15 C -0.572 4.572 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.525 5.525 19 Si 0.723 3.277 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.280 4.280 24 C 0.019 3.981 25 C -0.185 4.185 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.270 0.730 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.405 11.797 0.094 19.403 hybrid contribution -0.472 -3.352 -0.029 3.385 sum -15.877 8.445 0.065 17.983 Atomic orbital electron populations 1.20534 0.87674 1.03516 1.02937 1.21555 0.98466 0.89076 1.07772 1.72717 1.01555 1.24577 1.03353 1.73963 0.96799 1.21473 1.14725 1.23009 0.92464 0.90470 0.98554 1.77944 1.11874 0.88055 1.33513 1.47494 1.08731 1.04522 1.49516 0.68189 1.18019 0.88072 0.83829 0.95623 1.43989 1.13013 1.00802 1.72291 1.22521 0.82451 0.91803 0.72599 1.90501 1.25218 1.75772 1.46746 1.22042 1.06023 0.84591 1.03910 1.18980 0.87718 0.94522 0.99019 1.21106 0.92797 0.90790 1.52550 0.92329 1.25023 0.95232 0.99079 0.94891 1.69971 0.97657 1.35500 1.49364 0.86538 0.77821 0.85092 0.78219 1.20533 1.21093 1.19770 1.19537 0.93883 0.93778 1.20825 1.19950 0.90260 0.97013 0.90845 1.21052 1.00983 0.92617 1.03883 0.90757 0.90758 0.90377 0.72975 0.88656 0.88669 0.95493 0.95481 0.92668 0.88887 0.88976 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 9.36 36.01 0.34 -0.25 16 2 C -0.04 -0.41 6.80 -82.88 -0.56 -0.97 16 3 N -0.16 -2.25 11.34 33.31 0.38 -1.88 16 4 N -0.20 -3.32 11.67 31.95 0.37 -2.94 16 5 C 0.22 3.56 8.73 -156.58 -1.37 2.19 16 6 N -0.28 -4.60 12.67 31.96 0.40 -4.20 16 7 N -0.39 -5.77 6.87 31.41 0.22 -5.56 16 8 H 0.46 6.90 6.33 -182.73 -1.16 5.75 16 9 C 0.39 5.10 7.77 -153.57 -1.19 3.91 16 10 N -0.65 -7.14 5.38 -11.15 -0.06 -7.20 16 11 C 0.51 7.57 7.79 -10.98 -0.09 7.49 16 12 O -0.51 -9.26 13.49 5.55 0.07 -9.19 16 13 C -0.13 -1.98 5.64 -27.88 -0.16 -2.13 16 14 C 0.04 0.81 4.26 -27.89 -0.12 0.70 16 15 C -0.53 -13.59 9.11 -34.44 -0.31 -13.91 16 16 H 0.06 1.39 7.74 -52.49 -0.41 0.98 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 19 Si 0.90 20.16 29.54 -169.99 -5.02 15.13 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 C -0.26 -3.46 6.20 -104.93 -0.65 -4.11 16 24 C 0.04 0.36 5.93 -104.29 -0.62 -0.26 16 25 C -0.13 -0.71 8.83 36.01 0.32 -0.39 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.33 6.68 -51.93 -0.35 -0.02 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.43 3.11 6.08 -40.82 -0.25 2.87 16 30 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.34 6.74 -51.93 -0.35 -0.01 16 37 H 0.07 0.32 5.87 -51.93 -0.30 0.02 16 LS Contribution 316.08 15.07 4.76 4.76 Total: -1.00 -33.13 316.08 -7.55 -40.67 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -4.90 Total: 1.34 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -4.51 Total: -6.22 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 2.05 Total: -46.51 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.07 Total: -9.19 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.13 -7.55 -40.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597636692.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.149 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds