Wall clock time and date at job start Tue Mar 31 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32588 * 119.27201 * 2 1 4 4 N 1.28436 * 124.10479 * 180.02562 * 3 2 1 5 5 C 1.34191 * 121.17870 * 359.97438 * 4 3 2 6 6 N 1.31846 * 135.22844 * 179.97438 * 5 4 3 7 7 N 1.39934 * 109.32566 * 179.81121 * 6 5 4 8 8 H 0.96996 * 125.00914 * 180.26442 * 7 6 5 9 9 C 1.34320 * 109.99237 * 0.37921 * 7 6 5 10 10 N 1.38855 * 126.20828 * 179.89640 * 9 7 6 11 11 C 1.34774 * 119.99672 * 359.68981 * 10 9 7 12 12 O 1.21291 * 120.00274 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47238 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47055 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00079 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99493 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99862 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47162 * 90.00212 * 19 17 15 21 21 H 1.48498 * 109.46805 * 210.00384 * 19 17 15 22 22 H 1.48494 * 109.47357 * 330.00050 * 19 17 15 23 23 C 1.38959 * 107.58625 * 359.63387 * 9 7 6 24 24 C 1.36523 * 119.27854 * 179.97438 * 2 1 3 25 25 C 1.50705 * 121.23618 * 0.02562 * 24 2 1 26 26 H 1.08995 * 109.47269 * 90.00539 * 1 2 3 27 27 H 1.09006 * 109.46580 * 209.99710 * 1 2 3 28 28 H 1.08993 * 109.47572 * 329.99869 * 1 2 3 29 29 H 0.96994 * 120.00572 * 179.69005 * 10 9 7 30 30 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 31 31 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 32 32 H 1.09001 * 109.46832 * 299.99686 * 14 13 11 33 33 H 1.09004 * 109.47261 * 59.99705 * 14 13 11 34 34 H 0.96999 * 119.99718 * 179.97438 * 18 17 15 35 35 H 1.09006 * 109.46410 * 269.97852 * 25 24 2 36 36 H 1.08997 * 109.47489 * 29.97671 * 25 24 2 37 37 H 1.09001 * 109.46896 * 149.98426 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1553 1.1566 0.0000 4 7 3.4351 1.2648 -0.0005 5 6 4.2241 0.1793 -0.0005 6 7 5.5255 -0.0319 -0.0013 7 7 5.7711 -1.4095 0.0035 8 1 6.6509 -1.8179 0.0076 9 6 4.6091 -2.0831 -0.0009 10 7 4.4614 -3.4638 -0.0001 11 6 5.5503 -4.2580 -0.0009 12 8 6.6593 -3.7667 -0.0017 13 6 5.3901 -5.7565 -0.0006 14 6 6.7702 -6.4170 -0.0010 15 6 6.6099 -7.9154 -0.0001 16 1 5.6225 -8.3529 0.0002 17 6 7.7239 -8.7279 -0.0008 18 7 8.9262 -8.1951 -0.0016 19 14 7.5252 -10.5853 -0.0004 20 1 7.4716 -11.0777 -1.4004 21 1 8.6786 -11.2063 0.6990 22 1 6.2675 -10.9485 0.7005 23 6 3.5815 -1.1477 -0.0002 24 6 2.1747 -1.1908 0.0005 25 6 1.4329 -2.5027 0.0005 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 3.5746 -3.8568 0.0010 30 1 4.8413 -6.0630 0.8898 31 1 4.8398 -6.0632 -0.8901 32 1 7.3194 -6.1105 -0.8912 33 1 7.3200 -6.1102 0.8888 34 1 9.7100 -8.7667 -0.0017 35 1 1.2541 -2.8188 1.0283 36 1 0.4794 -2.3810 -0.5133 37 1 2.0289 -3.2570 -0.5131 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597636692.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:33 Heat of formation + Delta-G solvation = 58.274999 kcal Electronic energy + Delta-G solvation = -22016.731072 eV Core-core repulsion = 18602.165992 eV Total energy + Delta-G solvation = -3414.565081 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.35771 -41.45526 -40.08101 -37.00113 -35.67561 -35.64094 -33.54030 -33.13244 -31.30668 -29.62852 -28.29919 -27.69832 -26.22461 -24.25619 -23.28558 -21.97534 -21.79270 -19.93041 -19.36894 -18.54876 -17.80270 -17.52959 -17.52383 -16.86007 -16.66965 -16.46238 -15.54976 -15.36812 -14.99788 -14.53473 -14.43344 -14.24872 -14.13035 -13.58867 -13.44326 -13.32356 -12.91971 -12.85149 -12.64816 -12.54689 -12.51208 -11.98575 -11.79425 -11.72319 -11.45908 -11.24889 -11.03215 -10.81517 -10.64090 -10.56921 -8.92673 -8.19754 -6.32481 -1.15849 0.14477 0.70251 0.80309 1.38096 1.44818 1.45539 1.55878 1.59195 2.42351 2.47702 2.49082 2.97943 3.14842 3.15717 3.50558 3.58661 3.83533 3.91351 4.18054 4.27961 4.37612 4.47165 4.69947 4.73272 4.85284 4.93043 4.95146 4.97478 5.13393 5.17441 5.49174 5.50042 5.58417 5.71279 5.74162 5.82804 6.12948 6.17509 6.54725 6.88124 7.38641 7.70316 8.92402 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.031786 B = 0.003139 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.681692 B = 8919.194499 C = 9768.824898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.043 4.043 3 N -0.178 5.178 4 N -0.256 5.256 5 C 0.200 3.800 6 N -0.319 5.319 7 N -0.396 5.396 8 H 0.459 0.541 9 C 0.395 3.605 10 N -0.618 5.618 11 C 0.522 3.478 12 O -0.552 6.552 13 C -0.112 4.112 14 C 0.035 3.965 15 C -0.539 4.539 16 H 0.083 0.917 17 C -0.005 4.005 18 N -0.937 5.937 19 Si 0.967 3.033 20 H -0.275 1.275 21 H -0.293 1.293 22 H -0.252 1.252 23 C -0.266 4.266 24 C 0.057 3.943 25 C -0.133 4.133 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.450 0.550 30 H 0.129 0.871 31 H 0.129 0.871 32 H -0.012 1.012 33 H -0.011 1.011 34 H 0.261 0.739 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.083 7.045 0.139 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.178 4.178 3 N -0.038 5.038 4 N -0.122 5.122 5 C -0.064 4.064 6 N -0.158 5.158 7 N -0.112 5.112 8 H 0.314 0.686 9 C 0.152 3.848 10 N -0.273 5.273 11 C 0.314 3.686 12 O -0.426 6.426 13 C -0.151 4.151 14 C -0.002 4.002 15 C -0.577 4.577 16 H 0.101 0.899 17 C -0.203 4.203 18 N -0.577 5.577 19 Si 0.792 3.208 20 H -0.200 1.200 21 H -0.219 1.219 22 H -0.176 1.176 23 C -0.285 4.285 24 C 0.040 3.960 25 C -0.190 4.190 26 H 0.108 0.892 27 H 0.126 0.874 28 H 0.094 0.906 29 H 0.296 0.704 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.007 0.993 33 H 0.007 0.993 34 H 0.070 0.930 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.942 9.353 0.141 22.027 hybrid contribution 0.770 -2.594 -0.045 2.706 sum -19.172 6.759 0.096 20.329 Atomic orbital electron populations 1.20724 0.84174 1.05138 1.04441 1.22345 1.00622 0.88393 1.06469 1.72612 1.01041 1.26778 1.03327 1.73930 0.97715 1.22178 1.18359 1.23215 0.92720 0.91956 0.98463 1.77882 1.12812 0.88842 1.36218 1.47472 1.09216 1.04431 1.50053 0.68612 1.18089 0.87547 0.84358 0.94808 1.43570 1.13198 0.99502 1.70993 1.22299 0.82459 0.91807 0.72080 1.90521 1.27183 1.76298 1.48605 1.21792 1.01802 0.84424 1.07124 1.18779 0.91457 0.94572 0.95435 1.21699 0.93609 0.91921 1.50460 0.89911 1.26058 0.95001 1.04394 0.94859 1.70147 0.98694 1.37306 1.51589 0.85410 0.78162 0.78881 0.78360 1.20024 1.21888 1.17564 1.19766 0.95327 0.92303 1.21129 1.20597 0.88931 0.99279 0.87146 1.21357 1.01798 0.89673 1.06134 0.89161 0.87401 0.90578 0.70364 0.85338 0.85361 0.99321 0.99283 0.93002 0.86097 0.86023 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 9.36 71.24 0.67 -0.14 16 2 C -0.04 -0.84 6.80 42.04 0.29 -0.55 16 3 N -0.18 -5.05 11.34 -48.53 -0.55 -5.60 16 4 N -0.26 -8.78 11.67 -52.84 -0.62 -9.40 16 5 C 0.20 6.74 8.73 137.01 1.20 7.94 16 6 N -0.32 -11.30 12.67 -52.79 -0.67 -11.97 16 7 N -0.40 -12.32 6.87 -54.55 -0.37 -12.70 16 8 H 0.46 14.62 6.33 -213.43 -1.35 13.27 16 9 C 0.39 9.99 7.77 132.49 1.03 11.02 16 10 N -0.62 -11.81 5.38 -307.57 -1.66 -13.46 16 11 C 0.52 14.51 7.79 87.66 0.68 15.19 16 12 O -0.55 -20.44 13.49 -3.06 -0.04 -20.48 16 13 C -0.11 -3.20 5.64 29.85 0.17 -3.03 16 14 C 0.04 1.64 4.26 29.85 0.13 1.77 16 15 C -0.54 -26.77 9.11 25.60 0.23 -26.54 16 16 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 17 C -0.01 -0.28 5.46 84.66 0.46 0.18 16 18 N -0.94 -55.38 13.29 21.45 0.28 -55.09 16 19 Si 0.97 40.73 29.54 68.60 2.03 42.75 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 23 C -0.27 -6.72 6.20 -20.07 -0.12 -6.84 16 24 C 0.06 0.98 5.93 -19.65 -0.12 0.86 16 25 C -0.13 -0.66 8.83 71.24 0.63 -0.03 16 26 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.11 0.30 6.68 -2.38 -0.02 0.28 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.45 4.29 6.08 -92.71 -0.56 3.72 16 30 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 32 H -0.01 -0.63 8.10 -2.39 -0.02 -0.65 16 33 H -0.01 -0.61 8.10 -2.38 -0.02 -0.63 16 34 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 35 H 0.12 0.13 8.14 -2.38 -0.02 0.11 16 36 H 0.12 0.02 6.74 -2.39 -0.02 0.01 16 37 H 0.08 0.24 5.87 -2.39 -0.01 0.23 16 Total: -1.00 -79.45 316.08 2.88 -76.58 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -0.77 Total: 9.54 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 5.24 Total: -0.17 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -3.58 Total: -108.21 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.04 Total: -20.48 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Total: -79.45 2.88 -76.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597636692.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.851 kcal (2) G-P(sol) polarization free energy of solvation -79.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds