Wall clock time and date at job start Tue Mar 31 2020 06:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86791 * 120.00121 * 2 1 4 4 H 1.48502 * 109.47560 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47276 * 299.99746 * 3 2 1 6 6 H 1.48503 * 109.47358 * 59.99391 * 3 2 1 7 7 C 1.38815 * 119.99537 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99609 * 201.59721 * 7 2 1 9 9 N 1.36932 * 120.00370 * 21.59912 * 7 2 1 10 10 C 1.46497 * 120.00068 * 36.74172 * 9 7 2 11 11 C 1.50699 * 109.47203 * 90.00120 * 10 9 7 12 12 C 1.38253 * 119.92560 * 270.02465 * 11 10 9 13 13 C 1.38247 * 120.13959 * 179.74834 * 12 11 10 14 14 C 1.38544 * 120.03124 * 0.42847 * 13 12 11 15 15 C 1.39265 * 119.82317 * 359.56952 * 14 13 12 16 16 C 1.38234 * 119.92996 * 89.99868 * 11 10 9 17 17 O 1.36503 * 108.63966 * 180.24875 * 15 14 13 18 18 C 1.43989 * 105.48537 * 342.71937 * 17 15 14 19 19 O 1.36497 * 131.53469 * 179.87836 * 14 13 12 20 20 C 1.46499 * 119.99932 * 216.74609 * 9 7 2 21 21 C 1.54259 * 110.03404 * 62.51745 * 20 9 7 22 22 C 1.54967 * 104.15945 * 217.13402 * 21 20 9 23 23 C 1.54889 * 102.77696 * 37.89040 * 22 21 20 24 24 C 1.53878 * 110.03183 * 305.29720 * 20 9 7 25 25 H 0.97005 * 119.99602 * 354.92908 * 1 2 3 26 26 H 1.09006 * 109.47054 * 330.00407 * 10 9 7 27 27 H 1.09000 * 109.47457 * 209.99946 * 10 9 7 28 28 H 1.07995 * 119.93392 * 359.97438 * 12 11 10 29 29 H 1.08004 * 119.98213 * 180.32630 * 13 12 11 30 30 H 1.08001 * 119.98542 * 0.03335 * 16 11 10 31 31 H 1.08995 * 110.56937 * 268.55253 * 18 17 15 32 32 H 1.08993 * 110.56748 * 145.67739 * 18 17 15 33 33 H 1.09006 * 110.01499 * 183.91113 * 20 9 7 34 34 H 1.09002 * 110.48902 * 335.78562 * 21 20 9 35 35 H 1.09004 * 110.48755 * 98.42876 * 21 20 9 36 36 H 1.08995 * 110.72648 * 279.57705 * 22 21 20 37 37 H 1.09005 * 110.92372 * 156.29455 * 22 21 20 38 38 H 1.09000 * 110.49020 * 203.40047 * 23 22 21 39 39 H 1.09004 * 110.59867 * 80.81366 * 23 22 21 40 40 H 1.08992 * 110.03474 * 238.57337 * 24 20 9 41 41 H 1.09001 * 110.03290 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0334 -1.2349 0.3448 9 7 1.3977 -2.3467 -0.4355 10 6 0.4624 -2.2934 -1.5618 11 6 1.2149 -2.5059 -2.8501 12 6 1.7370 -1.4218 -3.5308 13 6 2.4326 -1.6121 -4.7103 14 6 2.6003 -2.8903 -5.2177 15 6 2.0744 -3.9823 -4.5319 16 6 1.3820 -3.7845 -3.3483 17 8 2.3750 -5.1190 -5.2254 18 6 2.7344 -4.6785 -6.5483 19 8 3.2303 -3.3427 -6.3409 20 6 1.6775 -3.6243 0.2245 21 6 1.2265 -3.5676 1.6986 22 6 2.3075 -4.3783 2.4572 23 6 3.6113 -3.9853 1.7191 24 6 3.1931 -3.8901 0.2373 25 1 -0.4850 0.8368 0.0743 26 1 -0.0259 -1.3191 -1.5828 27 1 -0.2894 -3.0743 -1.4471 28 1 1.6045 -0.4244 -3.1384 29 1 2.8439 -0.7638 -5.2372 30 1 0.9730 -4.6296 -2.8145 31 1 1.8598 -4.6657 -7.1985 32 1 3.5139 -5.3159 -6.9656 33 1 1.1610 -4.4326 -0.2932 34 1 1.2052 -2.5366 2.0517 35 1 0.2475 -4.0324 1.8162 36 1 2.1207 -5.4484 2.3679 37 1 2.3526 -4.0817 3.5052 38 1 4.3719 -4.7546 1.8522 39 1 3.9779 -3.0222 2.0746 40 1 3.4120 -4.8278 -0.2734 41 1 3.7204 -3.0683 -0.2472 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598930201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:11 Heat of formation + Delta-G solvation = -21.922753 kcal Electronic energy + Delta-G solvation = -23673.209032 eV Core-core repulsion = 20326.413908 eV Total energy + Delta-G solvation = -3346.795124 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.75952 -38.15402 -37.15987 -35.94901 -34.22783 -31.40607 -30.09711 -29.71060 -27.84273 -26.80212 -25.96839 -25.02128 -22.72352 -22.41002 -20.95676 -19.89576 -19.09059 -17.51580 -17.24781 -16.92041 -16.28556 -15.71901 -15.33329 -14.72829 -14.21457 -14.09435 -13.91659 -13.54573 -13.43546 -13.06006 -12.84429 -12.67607 -12.52938 -12.40979 -11.83054 -11.23711 -11.12339 -10.96263 -10.72586 -10.57392 -10.46890 -10.34171 -10.25384 -10.18748 -10.07578 -9.89023 -9.83355 -9.50068 -8.54083 -8.31932 -7.51261 -6.58766 -5.87268 -3.37658 1.70604 1.76726 3.10178 3.30319 3.41049 3.44209 3.73398 4.13503 4.44425 4.80469 4.95065 5.00127 5.23154 5.38435 5.46517 5.47200 5.52283 5.60519 5.77134 5.80981 5.91771 5.97812 6.14634 6.29743 6.31726 6.42563 6.45586 6.55356 6.57806 6.61249 6.61553 6.68825 6.86757 6.87613 6.97372 7.01015 7.20274 7.29065 7.36752 7.54548 7.65074 7.83745 8.49307 9.13240 9.76183 10.34068 11.15610 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.006338 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.124657 B = 4416.785333 C = 5714.101622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.013 3.987 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.063 0.937 9 N -0.567 5.567 10 C 0.175 3.825 11 C -0.058 4.058 12 C -0.091 4.091 13 C -0.102 4.102 14 C 0.001 3.999 15 C 0.021 3.979 16 C -0.099 4.099 17 O -0.316 6.316 18 C 0.214 3.786 19 O -0.317 6.317 20 C 0.172 3.828 21 C -0.130 4.130 22 C -0.124 4.124 23 C -0.117 4.117 24 C -0.133 4.133 25 H 0.256 0.744 26 H 0.111 0.889 27 H 0.036 0.964 28 H 0.136 0.864 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.075 0.925 32 H 0.122 0.878 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.043 0.957 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.447 -7.334 -6.508 10.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.187 4.187 3 Si 0.719 3.281 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.081 0.919 9 N -0.285 5.285 10 C 0.049 3.951 11 C -0.061 4.061 12 C -0.110 4.110 13 C -0.120 4.120 14 C -0.043 4.043 15 C -0.023 4.023 16 C -0.119 4.119 17 O -0.233 6.233 18 C 0.102 3.898 19 O -0.234 6.234 20 C 0.065 3.935 21 C -0.169 4.169 22 C -0.162 4.162 23 C -0.155 4.155 24 C -0.173 4.173 25 H 0.066 0.934 26 H 0.128 0.872 27 H 0.055 0.945 28 H 0.154 0.846 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.093 0.907 32 H 0.139 0.861 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.472 -7.315 -6.618 10.170 hybrid contribution 0.650 0.690 -0.276 0.987 sum 3.122 -6.626 -6.893 10.058 Atomic orbital electron populations 1.69887 1.05457 1.25947 1.51672 1.25135 0.94979 0.98439 1.00104 0.86430 0.79990 0.84219 0.77481 1.20048 1.21304 1.21687 1.18968 0.94659 0.85001 1.38849 0.91937 1.43894 1.51540 1.03052 1.30000 1.20104 0.90104 1.03759 0.81148 1.21170 0.97637 0.90475 0.96847 1.20926 0.97145 1.00197 0.92691 1.20079 1.01666 0.92601 0.97699 1.19645 1.00072 0.94992 0.89549 1.19796 1.01963 0.83361 0.97140 1.20028 1.00111 0.98136 0.93602 1.87302 1.84162 1.28402 1.23438 1.25432 0.98441 0.80738 0.85179 1.87282 1.63080 1.29751 1.43322 1.21060 0.92570 0.88147 0.91746 1.22810 0.96038 1.01123 0.96912 1.22445 0.96386 0.98911 0.98426 1.22246 0.96596 1.00230 0.96420 1.22555 0.98989 1.00332 0.95396 0.93354 0.87199 0.94527 0.84633 0.85778 0.85871 0.90724 0.86050 0.93409 0.89673 0.93623 0.92903 0.92867 0.93480 0.91975 0.93821 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.39 11.42 55.49 0.63 -22.76 16 2 C 0.01 0.34 4.96 -17.43 -0.09 0.25 16 3 Si 0.89 20.33 29.61 -169.99 -5.03 15.30 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.25 -6.06 7.80 -15.06 -0.12 -6.18 16 8 H 0.06 1.60 6.93 -52.49 -0.36 1.24 16 9 N -0.57 -12.77 2.37 -165.75 -0.39 -13.17 16 10 C 0.18 3.77 5.38 -5.20 -0.03 3.75 16 11 C -0.06 -1.13 5.46 -104.62 -0.57 -1.70 16 12 C -0.09 -1.73 9.69 -39.57 -0.38 -2.11 16 13 C -0.10 -1.78 10.06 -39.47 -0.40 -2.18 16 14 C 0.00 0.02 7.15 -39.09 -0.28 -0.26 16 15 C 0.02 0.38 7.15 -39.09 -0.28 0.10 16 16 C -0.10 -1.82 9.71 -39.47 -0.38 -2.21 16 17 O -0.32 -5.17 11.40 -45.70 -0.52 -5.69 16 18 C 0.21 2.71 8.89 101.05 0.90 3.61 16 19 O -0.32 -5.13 11.40 -45.68 -0.52 -5.65 16 20 C 0.17 3.43 3.41 -66.81 -0.23 3.21 16 21 C -0.13 -2.50 6.43 -25.03 -0.16 -2.66 16 22 C -0.12 -2.01 6.91 -24.70 -0.17 -2.18 16 23 C -0.12 -1.96 6.83 -25.07 -0.17 -2.13 16 24 C -0.13 -2.49 6.14 -25.61 -0.16 -2.65 16 25 H 0.26 6.59 8.32 -40.82 -0.34 6.25 16 26 H 0.11 2.66 5.40 -51.93 -0.28 2.38 16 27 H 0.04 0.75 7.91 -51.93 -0.41 0.34 16 28 H 0.14 2.67 8.06 -52.49 -0.42 2.25 16 29 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 30 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.91 7.86 -51.93 -0.41 0.51 16 34 H 0.08 1.92 7.22 -51.93 -0.38 1.55 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.52 6.70 -51.93 -0.35 1.17 16 LS Contribution 333.15 15.07 5.02 5.02 Total: -1.00 -27.09 333.15 -9.30 -36.39 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.97 Total: 3.90 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.52 Total: -13.34 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.24 Total: -35.93 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -1.04 Total: -11.35 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.09 -9.30 -36.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598930201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.466 kcal (2) G-P(sol) polarization free energy of solvation -27.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds