Wall clock time and date at job start Tue Mar 31 2020 06:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86791 * 120.00121 * 2 1 4 4 H 1.48502 * 109.47560 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47276 * 299.99746 * 3 2 1 6 6 H 1.48503 * 109.47358 * 59.99391 * 3 2 1 7 7 C 1.38815 * 119.99537 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99609 * 201.59721 * 7 2 1 9 9 N 1.36932 * 120.00370 * 21.59912 * 7 2 1 10 10 C 1.46497 * 120.00068 * 36.74172 * 9 7 2 11 11 C 1.50699 * 109.47203 * 90.00120 * 10 9 7 12 12 C 1.38253 * 119.92560 * 270.02465 * 11 10 9 13 13 C 1.38247 * 120.13959 * 179.74834 * 12 11 10 14 14 C 1.38544 * 120.03124 * 0.42847 * 13 12 11 15 15 C 1.39265 * 119.82317 * 359.56952 * 14 13 12 16 16 C 1.38234 * 119.92996 * 89.99868 * 11 10 9 17 17 O 1.36503 * 108.63966 * 180.24875 * 15 14 13 18 18 C 1.43989 * 105.48537 * 342.71937 * 17 15 14 19 19 O 1.36497 * 131.53469 * 179.87836 * 14 13 12 20 20 C 1.46499 * 119.99932 * 216.74609 * 9 7 2 21 21 C 1.54259 * 110.03404 * 62.51745 * 20 9 7 22 22 C 1.54967 * 104.15945 * 217.13402 * 21 20 9 23 23 C 1.54889 * 102.77696 * 37.89040 * 22 21 20 24 24 C 1.53878 * 110.03183 * 305.29720 * 20 9 7 25 25 H 0.97005 * 119.99602 * 354.92908 * 1 2 3 26 26 H 1.09006 * 109.47054 * 330.00407 * 10 9 7 27 27 H 1.09000 * 109.47457 * 209.99946 * 10 9 7 28 28 H 1.07995 * 119.93392 * 359.97438 * 12 11 10 29 29 H 1.08004 * 119.98213 * 180.32630 * 13 12 11 30 30 H 1.08001 * 119.98542 * 0.03335 * 16 11 10 31 31 H 1.08995 * 110.56937 * 268.55253 * 18 17 15 32 32 H 1.08993 * 110.56748 * 145.67739 * 18 17 15 33 33 H 1.09006 * 110.01499 * 183.91113 * 20 9 7 34 34 H 1.09002 * 110.48902 * 335.78562 * 21 20 9 35 35 H 1.09004 * 110.48755 * 98.42876 * 21 20 9 36 36 H 1.08995 * 110.72648 * 279.57705 * 22 21 20 37 37 H 1.09005 * 110.92372 * 156.29455 * 22 21 20 38 38 H 1.09000 * 110.49020 * 203.40047 * 23 22 21 39 39 H 1.09004 * 110.59867 * 80.81366 * 23 22 21 40 40 H 1.08992 * 110.03474 * 238.57337 * 24 20 9 41 41 H 1.09001 * 110.03290 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0334 -1.2349 0.3448 9 7 1.3977 -2.3467 -0.4355 10 6 0.4624 -2.2934 -1.5618 11 6 1.2149 -2.5059 -2.8501 12 6 1.7370 -1.4218 -3.5308 13 6 2.4326 -1.6121 -4.7103 14 6 2.6003 -2.8903 -5.2177 15 6 2.0744 -3.9823 -4.5319 16 6 1.3820 -3.7845 -3.3483 17 8 2.3750 -5.1190 -5.2254 18 6 2.7344 -4.6785 -6.5483 19 8 3.2303 -3.3427 -6.3409 20 6 1.6775 -3.6243 0.2245 21 6 1.2265 -3.5676 1.6986 22 6 2.3075 -4.3783 2.4572 23 6 3.6113 -3.9853 1.7191 24 6 3.1931 -3.8901 0.2373 25 1 -0.4850 0.8368 0.0743 26 1 -0.0259 -1.3191 -1.5828 27 1 -0.2894 -3.0743 -1.4471 28 1 1.6045 -0.4244 -3.1384 29 1 2.8439 -0.7638 -5.2372 30 1 0.9730 -4.6296 -2.8145 31 1 1.8598 -4.6657 -7.1985 32 1 3.5139 -5.3159 -6.9656 33 1 1.1610 -4.4326 -0.2932 34 1 1.2052 -2.5366 2.0517 35 1 0.2475 -4.0324 1.8162 36 1 2.1207 -5.4484 2.3679 37 1 2.3526 -4.0817 3.5052 38 1 4.3719 -4.7546 1.8522 39 1 3.9779 -3.0222 2.0746 40 1 3.4120 -4.8278 -0.2734 41 1 3.7204 -3.0683 -0.2472 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598930201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:11 Heat of formation + Delta-G solvation = -34.659189 kcal Electronic energy + Delta-G solvation = -23673.761325 eV Core-core repulsion = 20326.413908 eV Total energy + Delta-G solvation = -3347.347417 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.02709 -39.69670 -38.60575 -37.20392 -35.89322 -33.19228 -31.61038 -31.11682 -29.32694 -28.29974 -27.52528 -26.37452 -24.34793 -23.81726 -22.46573 -21.29236 -20.74631 -18.83158 -18.65301 -18.19912 -17.92391 -17.06509 -16.92433 -16.35940 -15.91812 -15.38984 -15.31367 -15.15932 -14.77397 -14.59651 -14.41772 -14.03660 -13.92618 -13.65992 -13.40662 -13.07589 -12.77135 -12.70141 -12.22263 -12.21290 -12.01025 -11.89836 -11.74439 -11.69801 -11.65067 -11.46194 -11.30874 -11.12101 -10.44912 -9.73653 -8.90405 -8.42741 -7.78705 -5.31511 0.27150 0.34102 1.44741 1.51445 1.58614 1.86175 2.52331 2.60572 2.70366 3.30996 3.57878 3.77690 3.87414 4.00902 4.02954 4.07579 4.20047 4.31896 4.34110 4.35030 4.45804 4.61922 4.71852 4.79648 4.86502 4.97027 4.98079 5.01354 5.14475 5.18047 5.22522 5.27128 5.34459 5.38766 5.52737 5.56208 5.65063 5.68158 5.74497 5.87073 5.92567 6.24212 6.58835 7.24668 7.94187 8.46940 9.21463 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.006338 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.124657 B = 4416.785333 C = 5714.101622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.025 4.025 3 Si 0.937 3.063 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.295 1.295 7 C -0.237 4.237 8 H 0.050 0.950 9 N -0.578 5.578 10 C 0.181 3.819 11 C -0.067 4.067 12 C -0.102 4.102 13 C -0.101 4.101 14 C 0.002 3.998 15 C 0.020 3.980 16 C -0.101 4.101 17 O -0.325 6.325 18 C 0.204 3.796 19 O -0.325 6.325 20 C 0.164 3.836 21 C -0.128 4.128 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.127 4.127 25 H 0.252 0.748 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.121 0.879 29 H 0.146 0.854 30 H 0.133 0.867 31 H 0.102 0.898 32 H 0.162 0.838 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.059 0.941 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.653 -9.286 -7.589 12.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.222 4.222 3 Si 0.766 3.234 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.223 1.223 7 C -0.367 4.367 8 H 0.068 0.932 9 N -0.297 5.297 10 C 0.055 3.945 11 C -0.071 4.071 12 C -0.121 4.121 13 C -0.119 4.119 14 C -0.042 4.042 15 C -0.024 4.024 16 C -0.121 4.121 17 O -0.242 6.242 18 C 0.094 3.906 19 O -0.242 6.242 20 C 0.057 3.943 21 C -0.167 4.167 22 C -0.150 4.150 23 C -0.151 4.151 24 C -0.166 4.166 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.139 0.861 29 H 0.164 0.836 30 H 0.151 0.849 31 H 0.120 0.880 32 H 0.179 0.821 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.694 -9.291 -7.720 12.632 hybrid contribution 0.297 1.173 -0.071 1.213 sum 3.992 -8.118 -7.791 11.939 Atomic orbital electron populations 1.69989 1.06349 1.25942 1.53560 1.25564 0.95439 1.00390 1.00838 0.85690 0.79004 0.81728 0.76975 1.19983 1.21277 1.22251 1.18943 0.94025 0.85987 1.37764 0.93217 1.44019 1.51358 1.03374 1.30900 1.19883 0.90209 1.02314 0.82127 1.20873 0.98244 0.91447 0.96502 1.20845 0.98120 0.99476 0.93666 1.20193 1.01063 0.93636 0.97047 1.19765 0.99506 0.94924 0.90036 1.19837 1.01445 0.84190 0.96961 1.19996 1.00306 0.97719 0.94033 1.87287 1.84047 1.27955 1.24950 1.26083 1.01031 0.79648 0.83856 1.87271 1.63109 1.31408 1.42461 1.21263 0.93735 0.87270 0.91997 1.22704 0.97605 0.99426 0.96973 1.22399 0.94429 0.99722 0.98458 1.22225 0.97604 1.00460 0.94840 1.22453 0.97466 0.99912 0.96803 0.93862 0.89970 0.94136 0.86061 0.83641 0.84900 0.88043 0.82089 0.92427 0.93626 0.93201 0.90424 0.91740 0.90662 0.93509 0.92190 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.02 11.42 21.65 0.25 -49.77 16 2 C -0.03 -1.30 4.96 84.86 0.42 -0.88 16 3 Si 0.94 42.95 29.61 68.60 2.03 44.98 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.24 -12.06 7.80 84.03 0.66 -11.41 16 8 H 0.05 2.64 6.93 -2.91 -0.02 2.62 16 9 N -0.58 -26.63 2.37 -678.32 -1.61 -28.24 16 10 C 0.18 8.01 5.38 85.63 0.46 8.47 16 11 C -0.07 -2.67 5.46 -19.86 -0.11 -2.78 16 12 C -0.10 -3.94 9.69 22.28 0.22 -3.72 16 13 C -0.10 -3.44 10.06 22.34 0.22 -3.21 16 14 C 0.00 0.07 7.15 22.59 0.16 0.23 16 15 C 0.02 0.68 7.15 22.59 0.16 0.84 16 16 C -0.10 -3.63 9.71 22.34 0.22 -3.41 16 17 O -0.33 -9.72 11.40 -76.09 -0.87 -10.59 16 18 C 0.20 4.42 8.89 113.37 1.01 5.43 16 19 O -0.33 -9.58 11.40 -76.01 -0.87 -10.45 16 20 C 0.16 6.50 3.41 45.71 0.16 6.66 16 21 C -0.13 -4.89 6.43 31.69 0.20 -4.69 16 22 C -0.11 -3.40 6.91 31.91 0.22 -3.18 16 23 C -0.11 -3.60 6.83 31.67 0.22 -3.38 16 24 C -0.13 -4.62 6.14 31.32 0.19 -4.43 16 25 H 0.25 13.46 8.32 -92.70 -0.77 12.69 16 26 H 0.08 4.16 5.40 -2.38 -0.01 4.14 16 27 H 0.04 1.70 7.91 -2.39 -0.02 1.68 16 28 H 0.12 4.98 8.06 -2.91 -0.02 4.95 16 29 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 30 H 0.13 4.41 8.06 -2.91 -0.02 4.38 16 31 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.16 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.06 2.15 7.86 -2.38 -0.02 2.13 16 34 H 0.04 2.11 7.22 -2.39 -0.02 2.09 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.04 1.86 6.70 -2.39 -0.02 1.84 16 Total: -1.00 -59.25 333.15 4.36 -54.90 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 1.02 Total: 18.65 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 4.41 Total: -19.47 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -1.36 Total: -78.01 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -1.73 Total: -21.04 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -59.25 4.36 -54.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598930201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.237 kcal (2) G-P(sol) polarization free energy of solvation -59.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds