Wall clock time and date at job start Tue Mar 31 2020 06:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00310 * 2 1 4 4 H 1.48493 * 109.47243 * 269.99946 * 3 2 1 5 5 H 1.48502 * 109.46967 * 30.00200 * 3 2 1 6 6 H 1.48498 * 109.47267 * 149.99751 * 3 2 1 7 7 C 1.37886 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99487 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00147 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47001 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46863 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47231 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47370 * 179.97438 * 12 11 10 14 14 O 1.21282 * 120.00135 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99869 * 179.97438 * 13 12 11 16 16 C 1.46632 * 126.56001 * 359.97438 * 15 13 12 17 17 C 1.50794 * 107.70713 * 180.02562 * 16 15 13 18 18 C 1.38501 * 131.13243 * 179.97438 * 17 16 15 19 19 C 1.38049 * 120.17576 * 180.27898 * 18 17 16 20 20 C 1.38749 * 119.90493 * 359.46820 * 19 18 17 21 21 O 1.35897 * 120.07539 * 180.25908 * 20 19 18 22 22 C 1.38640 * 119.84474 * 0.50506 * 20 19 18 23 23 C 1.38112 * 108.84789 * 359.97438 * 17 16 15 24 24 C 1.46628 * 126.55782 * 179.97438 * 15 13 12 25 25 H 0.97001 * 119.99702 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46997 * 59.99578 * 9 7 2 27 27 H 1.09002 * 109.46611 * 299.99803 * 9 7 2 28 28 H 1.08999 * 109.46872 * 59.99980 * 10 9 7 29 29 H 1.08992 * 109.47145 * 299.99897 * 10 9 7 30 30 H 1.08999 * 109.47122 * 60.00465 * 11 10 9 31 31 H 1.09007 * 109.47332 * 300.00435 * 11 10 9 32 32 H 1.08999 * 109.46686 * 60.00200 * 12 11 10 33 33 H 1.08997 * 109.46975 * 300.00817 * 12 11 10 34 34 H 1.08998 * 109.81253 * 60.46540 * 16 15 13 35 35 H 1.08998 * 109.80544 * 299.56352 * 16 15 13 36 36 H 1.08002 * 119.90770 * 359.97438 * 18 17 16 37 37 H 1.07997 * 120.03940 * 179.70495 * 19 18 17 38 38 H 0.96705 * 113.99994 * 270.24802 * 21 20 19 39 39 H 1.07998 * 119.96784 * 179.74798 * 22 20 19 40 40 H 1.09011 * 109.80867 * 60.43281 * 24 15 13 41 41 H 1.09007 * 109.81387 * 299.53659 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4743 -6.1501 0.0005 13 6 1.7208 -7.4552 0.0018 14 8 0.5080 -7.4552 0.0026 15 7 2.3946 -8.6224 0.0010 16 6 3.8514 -8.7899 -0.0016 17 6 4.1429 -10.2694 -0.0023 18 6 5.3425 -10.9616 -0.0050 19 6 5.3471 -12.3421 -0.0108 20 6 4.1467 -13.0378 -0.0028 21 8 4.1472 -14.3968 -0.0032 22 6 2.9467 -12.3434 0.0004 23 6 2.9467 -10.9598 0.0004 24 6 1.8113 -9.9676 0.0025 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6045 -0.8894 30 1 0.8533 -5.0451 -0.8886 31 1 0.8537 -5.0446 0.8914 32 1 3.1015 -6.0923 0.8901 33 1 3.1004 -6.0924 -0.8898 34 1 4.2778 -8.3296 0.8896 35 1 4.2744 -8.3298 -0.8946 36 1 6.2768 -10.4199 -0.0075 37 1 6.2838 -12.8796 -0.0177 38 1 4.1451 -14.7899 -0.8867 39 1 2.0112 -12.8830 0.0025 40 1 1.1984 -10.1055 -0.8883 41 1 1.2021 -10.1052 0.8960 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600229382.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:24 Heat of formation + Delta-G solvation = -63.894497 kcal Electronic energy + Delta-G solvation = -21373.967000 eV Core-core repulsion = 18025.351845 eV Total energy + Delta-G solvation = -3348.615155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13260 -39.53765 -38.01047 -35.60377 -34.89526 -32.68268 -32.03692 -30.81660 -29.70327 -27.99579 -26.10801 -24.88889 -22.47503 -22.09410 -21.75336 -20.01953 -19.46159 -18.55219 -17.18746 -16.60648 -16.43011 -16.16307 -15.90636 -15.55541 -15.04578 -14.88004 -14.40862 -14.12626 -13.71632 -13.63911 -13.33650 -12.93693 -12.61094 -12.43085 -12.31440 -12.10434 -11.98419 -11.66311 -11.59709 -10.98181 -10.93132 -10.54201 -10.50385 -10.40952 -9.94605 -9.61044 -9.47171 -9.24231 -9.23004 -8.98158 -8.58025 -8.29714 -5.94463 -3.96917 0.65974 0.79608 2.60790 2.64456 3.02812 3.34509 3.40538 3.43674 3.55487 3.94808 4.04784 4.47983 4.49353 4.65109 4.75826 4.93677 5.04020 5.06752 5.19936 5.22782 5.28720 5.39157 5.39924 5.41182 5.47828 5.70959 5.74989 5.85001 5.90603 6.10836 6.13069 6.23952 6.30100 6.54224 6.83655 7.00904 7.14517 7.19828 7.29377 7.74947 7.90857 8.06726 8.09493 8.48622 9.10765 9.66574 11.16832 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.046399 B = 0.002190 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.317971 B =12784.183567 C =13343.210345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.132 4.132 13 C 0.537 3.463 14 O -0.527 6.527 15 N -0.624 5.624 16 C 0.146 3.854 17 C -0.114 4.114 18 C -0.077 4.077 19 C -0.141 4.141 20 C 0.110 3.890 21 O -0.497 6.497 22 C -0.122 4.122 23 C -0.085 4.085 24 C 0.149 3.851 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.392 0.608 39 H 0.132 0.868 40 H 0.084 0.916 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.853 -28.496 -1.684 30.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.172 4.172 13 C 0.327 3.673 14 O -0.401 6.401 15 N -0.361 5.361 16 C 0.023 3.977 17 C -0.115 4.115 18 C -0.095 4.095 19 C -0.160 4.160 20 C 0.065 3.935 21 O -0.307 6.307 22 C -0.141 4.141 23 C -0.086 4.086 24 C 0.026 3.974 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.248 0.752 39 H 0.150 0.850 40 H 0.102 0.898 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.959 -28.184 -1.068 30.258 hybrid contribution 0.540 0.661 -0.497 0.988 sum 11.499 -27.523 -1.566 29.870 Atomic orbital electron populations 1.69976 1.06040 1.26496 1.50918 1.25052 0.94855 0.99246 0.95493 0.86604 0.79813 0.83593 0.78028 1.20726 1.21269 1.19932 1.21279 0.92973 0.91185 1.50392 0.92751 1.19101 0.94068 0.91258 0.97348 1.21645 0.99086 0.93899 1.00112 1.21486 0.97025 0.92642 1.03088 1.21800 1.00090 0.91184 1.04119 1.20792 0.87839 0.83709 0.74935 1.90734 1.13873 1.86663 1.48848 1.48106 1.06821 1.05471 1.75682 1.20294 0.81851 0.92405 1.03153 1.20367 0.93869 0.95255 1.01972 1.20369 0.96927 0.93233 0.99001 1.21348 0.98103 0.94071 1.02437 1.18257 0.91916 0.82964 1.00332 1.84841 1.96435 1.15761 1.33708 1.20702 0.98518 0.92360 1.02546 1.20191 0.95396 0.93342 0.99643 1.20157 0.93695 0.80340 1.03212 0.93052 0.96577 0.96551 0.93429 0.93431 0.91703 0.91685 0.88961 0.88959 0.89536 0.89550 0.84931 0.84763 0.75193 0.84985 0.89848 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.56 13.29 55.43 0.74 -26.83 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 11 C -0.10 -1.86 4.50 -26.73 -0.12 -1.99 16 12 C -0.13 -1.77 4.95 -27.88 -0.14 -1.91 16 13 C 0.54 7.78 7.87 -10.99 -0.09 7.70 16 14 O -0.53 -9.78 16.35 5.56 0.09 -9.69 16 15 N -0.62 -7.16 3.34 -176.11 -0.59 -7.75 16 16 C 0.15 1.21 6.54 -5.08 -0.03 1.18 16 17 C -0.11 -0.93 6.22 -104.53 -0.65 -1.58 16 18 C -0.08 -0.51 10.04 -39.55 -0.40 -0.91 16 19 C -0.14 -0.93 9.99 -39.46 -0.39 -1.33 16 20 C 0.11 0.81 6.70 -39.24 -0.26 0.55 16 21 O -0.50 -3.16 13.50 -19.42 -0.26 -3.42 16 22 C -0.12 -0.97 9.99 -39.39 -0.39 -1.36 16 23 C -0.09 -0.76 6.21 -104.58 -0.65 -1.41 16 24 C 0.15 1.53 6.90 -5.08 -0.04 1.50 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.06 1.24 8.10 -51.92 -0.42 0.82 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.39 0.59 9.06 45.56 0.41 1.00 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.08 0.86 8.14 -51.92 -0.42 0.43 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 348.86 15.07 5.26 5.26 Total: -1.00 -35.58 348.86 -9.10 -44.68 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -5.47 Total: -3.78 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -3.85 Total: -15.37 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.15 Total: -34.57 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.17 Total: -13.12 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.58 -9.10 -44.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600229382.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.218 kcal (2) G-P(sol) polarization free energy of solvation -35.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds