Wall clock time and date at job start Tue Mar 31 2020 06:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00310 * 2 1 4 4 H 1.48493 * 109.47243 * 269.99946 * 3 2 1 5 5 H 1.48502 * 109.46967 * 30.00200 * 3 2 1 6 6 H 1.48498 * 109.47267 * 149.99751 * 3 2 1 7 7 C 1.37886 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99487 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00147 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47001 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46863 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47231 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47370 * 179.97438 * 12 11 10 14 14 O 1.21282 * 120.00135 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99869 * 179.97438 * 13 12 11 16 16 C 1.46632 * 126.56001 * 359.97438 * 15 13 12 17 17 C 1.50794 * 107.70713 * 180.02562 * 16 15 13 18 18 C 1.38501 * 131.13243 * 179.97438 * 17 16 15 19 19 C 1.38049 * 120.17576 * 180.27898 * 18 17 16 20 20 C 1.38749 * 119.90493 * 359.46820 * 19 18 17 21 21 O 1.35897 * 120.07539 * 180.25908 * 20 19 18 22 22 C 1.38640 * 119.84474 * 0.50506 * 20 19 18 23 23 C 1.38112 * 108.84789 * 359.97438 * 17 16 15 24 24 C 1.46628 * 126.55782 * 179.97438 * 15 13 12 25 25 H 0.97001 * 119.99702 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46997 * 59.99578 * 9 7 2 27 27 H 1.09002 * 109.46611 * 299.99803 * 9 7 2 28 28 H 1.08999 * 109.46872 * 59.99980 * 10 9 7 29 29 H 1.08992 * 109.47145 * 299.99897 * 10 9 7 30 30 H 1.08999 * 109.47122 * 60.00465 * 11 10 9 31 31 H 1.09007 * 109.47332 * 300.00435 * 11 10 9 32 32 H 1.08999 * 109.46686 * 60.00200 * 12 11 10 33 33 H 1.08997 * 109.46975 * 300.00817 * 12 11 10 34 34 H 1.08998 * 109.81253 * 60.46540 * 16 15 13 35 35 H 1.08998 * 109.80544 * 299.56352 * 16 15 13 36 36 H 1.08002 * 119.90770 * 359.97438 * 18 17 16 37 37 H 1.07997 * 120.03940 * 179.70495 * 19 18 17 38 38 H 0.96705 * 113.99994 * 270.24802 * 21 20 19 39 39 H 1.07998 * 119.96784 * 179.74798 * 22 20 19 40 40 H 1.09011 * 109.80867 * 60.43281 * 24 15 13 41 41 H 1.09007 * 109.81387 * 299.53659 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4743 -6.1501 0.0005 13 6 1.7208 -7.4552 0.0018 14 8 0.5080 -7.4552 0.0026 15 7 2.3946 -8.6224 0.0010 16 6 3.8514 -8.7899 -0.0016 17 6 4.1429 -10.2694 -0.0023 18 6 5.3425 -10.9616 -0.0050 19 6 5.3471 -12.3421 -0.0108 20 6 4.1467 -13.0378 -0.0028 21 8 4.1472 -14.3968 -0.0032 22 6 2.9467 -12.3434 0.0004 23 6 2.9467 -10.9598 0.0004 24 6 1.8113 -9.9676 0.0025 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6045 -0.8894 30 1 0.8533 -5.0451 -0.8886 31 1 0.8537 -5.0446 0.8914 32 1 3.1015 -6.0923 0.8901 33 1 3.1004 -6.0924 -0.8898 34 1 4.2778 -8.3296 0.8896 35 1 4.2744 -8.3298 -0.8946 36 1 6.2768 -10.4199 -0.0075 37 1 6.2838 -12.8796 -0.0177 38 1 4.1451 -14.7899 -0.8867 39 1 2.0112 -12.8830 0.0025 40 1 1.1984 -10.1055 -0.8883 41 1 1.2021 -10.1052 0.8960 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600229382.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:24 Heat of formation + Delta-G solvation = -87.547188 kcal Electronic energy + Delta-G solvation = -21374.992658 eV Core-core repulsion = 18025.351845 eV Total energy + Delta-G solvation = -3349.640813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.85345 -40.41246 -38.72404 -36.66427 -36.26621 -34.62011 -32.77602 -31.76235 -31.07050 -28.84810 -27.48470 -26.06255 -23.95693 -22.77928 -22.47104 -21.72726 -20.46112 -19.07205 -18.42364 -18.10105 -17.52469 -17.16905 -16.54452 -16.46494 -16.24726 -16.22072 -15.68975 -15.02486 -14.62631 -14.53333 -14.43356 -14.05929 -13.79774 -13.71849 -13.48166 -13.27501 -12.96288 -12.85519 -12.80725 -12.53412 -12.33256 -12.14818 -12.13734 -11.43233 -11.36634 -11.36435 -11.19430 -10.89433 -10.53825 -10.19150 -9.85172 -9.26822 -8.17529 -6.29514 0.12161 0.26080 1.41278 1.43609 1.51055 1.54621 1.73235 2.42903 2.51470 2.99561 3.15178 3.36837 3.41393 3.72641 3.96905 4.02164 4.12415 4.22273 4.35927 4.39385 4.47409 4.53014 4.53962 4.64599 4.71035 4.80367 4.84073 4.86648 4.95945 5.05655 5.19094 5.19900 5.34671 5.37968 5.38692 5.48731 5.58102 5.76792 5.79668 5.89542 6.26476 6.33598 6.83648 6.89115 7.02066 7.39938 8.94670 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.046399 B = 0.002190 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.317971 B =12784.183567 C =13343.210345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.094 4.094 11 C -0.097 4.097 12 C -0.120 4.120 13 C 0.534 3.466 14 O -0.582 6.582 15 N -0.621 5.621 16 C 0.140 3.860 17 C -0.122 4.122 18 C -0.072 4.072 19 C -0.141 4.141 20 C 0.106 3.894 21 O -0.508 6.508 22 C -0.133 4.133 23 C -0.100 4.100 24 C 0.146 3.854 25 H 0.262 0.738 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.412 0.588 39 H 0.136 0.864 40 H 0.076 0.924 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.653 -29.048 -1.814 33.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.182 1.182 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.132 4.132 11 C -0.135 4.135 12 C -0.159 4.159 13 C 0.326 3.674 14 O -0.461 6.461 15 N -0.355 5.355 16 C 0.019 3.981 17 C -0.122 4.122 18 C -0.090 4.090 19 C -0.159 4.159 20 C 0.062 3.938 21 O -0.322 6.322 22 C -0.152 4.152 23 C -0.101 4.101 24 C 0.023 3.977 25 H 0.071 0.929 26 H 0.003 0.997 27 H 0.003 0.997 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.178 0.822 37 H 0.173 0.827 38 H 0.272 0.728 39 H 0.154 0.846 40 H 0.094 0.906 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.816 -28.788 -1.213 32.400 hybrid contribution -0.654 0.701 -0.467 1.067 sum 14.163 -28.087 -1.680 31.500 Atomic orbital electron populations 1.70137 1.08074 1.27702 1.51941 1.26115 0.95805 1.03798 0.94880 0.85371 0.78674 0.78029 0.78497 1.19726 1.21065 1.18244 1.21758 0.93783 0.92155 1.50094 0.91451 1.19071 0.94739 0.93849 0.94328 1.21436 0.97792 0.92465 1.01503 1.21273 0.97489 0.93600 1.01157 1.21669 0.98892 0.88411 1.06914 1.20914 0.87206 0.84834 0.74489 1.90715 1.16177 1.87503 1.51741 1.48044 1.08600 1.04996 1.73818 1.20569 0.79552 0.93019 1.05001 1.20477 0.94151 0.95084 1.02535 1.20663 0.97333 0.93325 0.97708 1.21643 0.98580 0.94298 1.01427 1.18380 0.92015 0.83434 0.99998 1.84788 1.96386 1.15304 1.35681 1.20822 0.99281 0.92164 1.02959 1.20067 0.95075 0.93531 1.01400 1.20153 0.94477 0.80543 1.02503 0.92908 0.99716 0.99729 0.91912 0.91835 0.93756 0.93812 0.86092 0.85982 0.87704 0.87499 0.82198 0.82705 0.72828 0.84644 0.90562 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.20 13.29 21.45 0.28 -58.91 16 2 C -0.01 -0.53 5.46 84.66 0.46 -0.06 16 3 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.54 -31.22 9.11 25.60 0.23 -30.99 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.02 0.95 4.97 29.85 0.15 1.10 16 10 C -0.09 -3.81 5.15 30.59 0.16 -3.65 16 11 C -0.10 -3.49 4.50 30.59 0.14 -3.36 16 12 C -0.12 -2.96 4.95 29.85 0.15 -2.81 16 13 C 0.53 15.32 7.87 87.66 0.69 16.01 16 14 O -0.58 -22.58 16.35 -3.04 -0.05 -22.63 16 15 N -0.62 -13.63 3.34 -829.48 -2.77 -16.40 16 16 C 0.14 1.93 6.54 85.64 0.56 2.49 16 17 C -0.12 -1.71 6.22 -19.80 -0.12 -1.83 16 18 C -0.07 -0.72 10.04 22.29 0.22 -0.49 16 19 C -0.14 -1.45 9.99 22.35 0.22 -1.23 16 20 C 0.11 1.38 6.70 22.49 0.15 1.53 16 21 O -0.51 -5.53 13.50 -92.39 -1.25 -6.78 16 22 C -0.13 -2.01 9.99 22.39 0.22 -1.79 16 23 C -0.10 -1.70 6.21 -19.84 -0.12 -1.82 16 24 C 0.15 3.07 6.90 85.64 0.59 3.66 16 25 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 26 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 27 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 31 H 0.04 1.73 8.10 -2.38 -0.02 1.71 16 32 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 37 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 38 H 0.41 0.45 9.06 -74.05 -0.67 -0.22 16 39 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 40 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.07 1.64 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -79.87 348.86 2.30 -77.57 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: 0.35 Total: 3.60 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 3.70 Total: -23.25 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -2.48 Total: -75.31 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -1.30 Total: -29.41 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -79.87 2.30 -77.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600229382.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.982 kcal (2) G-P(sol) polarization free energy of solvation -79.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds