Wall clock time and date at job start Tue Mar 31 2020 06:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00067 * 2 1 4 4 H 1.48498 * 109.46938 * 269.99664 * 3 2 1 5 5 H 1.48499 * 109.47096 * 29.99433 * 3 2 1 6 6 H 1.48497 * 109.47284 * 149.99728 * 3 2 1 7 7 C 1.37879 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00336 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99630 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46733 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46831 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46831 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46733 * 179.97438 * 12 11 10 14 14 O 1.21294 * 120.00235 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99339 * 180.02562 * 13 12 11 16 16 C 1.40126 * 119.99726 * 185.52884 * 15 13 12 17 17 C 1.38534 * 119.94115 * 24.84922 * 16 15 13 18 18 C 1.38190 * 120.27179 * 180.27362 * 17 16 15 19 19 C 1.38380 * 119.82392 * 359.64242 * 18 17 16 20 20 C 1.37836 * 120.11112 * 0.02562 * 19 18 17 21 21 C 1.38719 * 120.83477 * 0.29610 * 20 19 18 22 22 O 1.36200 * 111.28396 * 179.50243 * 21 20 19 23 23 C 1.43770 * 109.26193 * 18.60633 * 22 21 20 24 24 C 1.51657 * 132.11967 * 180.47077 * 20 19 18 25 25 H 0.96996 * 119.99734 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47331 * 60.00584 * 9 7 2 27 27 H 1.08996 * 109.47479 * 299.99673 * 9 7 2 28 28 H 1.09002 * 109.46906 * 60.00115 * 10 9 7 29 29 H 1.09001 * 109.47390 * 299.99861 * 10 9 7 30 30 H 1.09000 * 109.46822 * 60.00134 * 11 10 9 31 31 H 1.08996 * 109.46906 * 299.99631 * 11 10 9 32 32 H 1.09002 * 109.46906 * 60.00093 * 12 11 10 33 33 H 1.09002 * 109.47017 * 300.00230 * 12 11 10 34 34 H 0.96996 * 120.00443 * 5.52814 * 15 13 12 35 35 H 1.07997 * 119.86167 * 0.06754 * 17 16 15 36 36 H 1.07998 * 120.08933 * 179.61887 * 18 17 16 37 37 H 1.08004 * 119.94072 * 180.02562 * 19 18 17 38 38 H 1.08993 * 110.75044 * 90.79348 * 23 22 21 39 39 H 1.08998 * 110.74904 * 213.96677 * 23 22 21 40 40 H 1.09003 * 110.94203 * 46.01197 * 24 20 19 41 41 H 1.09007 * 110.97069 * 282.33889 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0022 12 6 6.0615 -4.0792 0.0015 13 6 7.5685 -4.0791 0.0020 14 8 8.1750 -3.0287 0.0035 15 7 8.2423 -5.2463 0.0010 16 6 9.6386 -5.2493 0.1185 17 6 10.2832 -4.1877 0.7322 18 6 11.6603 -4.1809 0.8467 19 6 12.3972 -5.2429 0.3526 20 6 11.7598 -6.3046 -0.2528 21 6 10.3788 -6.3248 -0.3822 22 8 9.9582 -7.4543 -1.0165 23 6 10.9985 -8.4451 -0.9603 24 6 12.2829 -7.5877 -0.8691 25 1 -0.4849 0.8400 -0.0004 26 1 3.8745 -0.6801 0.8912 27 1 3.8752 -0.6805 -0.8888 28 1 3.6585 -3.1502 -0.8893 29 1 3.6578 -3.1507 0.8907 30 1 5.9141 -2.1231 0.8927 31 1 5.9155 -2.1225 -0.8873 32 1 5.6989 -4.5922 -0.8893 33 1 5.6974 -4.5937 0.8907 34 1 7.7607 -6.0843 -0.0810 35 1 9.7072 -3.3604 1.1198 36 1 12.1602 -3.3489 1.3202 37 1 13.4736 -5.2397 0.4414 38 1 10.8882 -9.0710 -0.0748 39 1 11.0007 -9.0543 -1.8642 40 1 13.0208 -8.0592 -0.2199 41 1 12.6994 -7.4033 -1.8595 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600261961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:41 Heat of formation + Delta-G solvation = -57.091920 kcal Electronic energy + Delta-G solvation = -21687.115367 eV Core-core repulsion = 18338.795194 eV Total energy + Delta-G solvation = -3348.320174 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.56560 -40.07692 -37.55123 -35.31044 -34.88314 -32.68956 -32.29953 -30.46528 -29.74488 -28.94190 -25.99632 -23.93920 -22.85891 -22.60319 -21.43961 -20.12363 -20.00765 -18.13195 -17.61985 -16.99059 -16.57975 -16.24105 -16.14887 -15.77097 -15.23084 -14.38263 -14.28507 -14.07715 -13.73654 -13.43217 -13.29493 -13.10590 -12.65574 -12.42766 -12.24080 -12.14224 -12.02292 -11.76112 -11.68163 -11.23458 -11.11885 -10.75020 -10.65968 -10.54291 -9.93535 -9.79923 -9.64498 -9.43272 -9.11492 -8.65213 -8.48622 -8.07262 -5.99759 -3.97233 0.99593 1.04813 2.52186 2.83122 2.93047 3.36084 3.43049 3.48553 3.48883 4.03080 4.20829 4.50785 4.54217 4.59454 4.65921 4.94484 4.98500 5.05676 5.16282 5.23740 5.26138 5.31389 5.35102 5.35917 5.52798 5.74148 5.85798 5.97378 6.00997 6.12705 6.21710 6.28823 6.39470 6.40475 6.67092 6.80662 6.91083 6.98931 7.22790 7.38429 7.51215 7.85429 8.01795 8.59069 9.05284 9.63570 11.13740 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036722 B = 0.002484 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.295562 B =11267.594566 C =11894.143533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.103 4.103 11 C -0.107 4.107 12 C -0.138 4.138 13 C 0.513 3.487 14 O -0.517 6.517 15 N -0.673 5.673 16 C 0.143 3.857 17 C -0.102 4.102 18 C -0.124 4.124 19 C -0.094 4.094 20 C -0.156 4.156 21 C 0.067 3.933 22 O -0.304 6.304 23 C 0.052 3.948 24 C -0.108 4.108 25 H 0.262 0.738 26 H 0.016 0.984 27 H 0.011 0.989 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.414 0.586 35 H 0.157 0.843 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.378 -18.284 0.381 32.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.145 4.145 12 C -0.178 4.178 13 C 0.302 3.698 14 O -0.392 6.392 15 N -0.318 5.318 16 C 0.047 3.953 17 C -0.122 4.122 18 C -0.142 4.142 19 C -0.113 4.113 20 C -0.158 4.158 21 C 0.020 3.980 22 O -0.219 6.219 23 C -0.023 4.023 24 C -0.145 4.145 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.249 0.751 35 H 0.174 0.826 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 27.350 -17.444 0.280 32.441 hybrid contribution 0.294 0.313 -0.117 0.445 sum 27.644 -17.132 0.163 32.522 Atomic orbital electron populations 1.69920 1.06307 1.26820 1.51472 1.25049 0.94742 0.99238 0.94627 0.86769 0.80423 0.83541 0.78533 1.20327 1.21468 1.18893 1.21181 0.89658 0.94382 1.50505 0.91103 1.19578 0.96926 0.92455 0.96327 1.21481 0.91543 0.99991 1.01020 1.21507 0.97381 0.92543 1.03032 1.21812 0.89121 1.02164 1.04657 1.21320 0.91242 0.82672 0.74570 1.90659 1.70124 1.31268 1.47140 1.43685 1.04759 1.10510 1.72834 1.17165 0.82809 0.95082 1.00207 1.21299 0.95006 0.98012 0.97890 1.20996 0.93362 0.98480 1.01395 1.20292 0.99863 0.92618 0.98502 1.20550 0.92717 0.98412 1.04111 1.19196 0.92190 0.89763 0.96898 1.86830 1.41654 1.21811 1.71573 1.23819 0.84528 0.90545 1.03417 1.21788 0.98406 0.92383 1.01942 0.92822 0.96600 0.97046 0.92794 0.92772 0.91644 0.91662 0.88596 0.88481 0.75061 0.82617 0.85014 0.85783 0.90579 0.87594 0.89028 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.46 13.96 55.43 0.77 -27.69 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.40 27.47 -169.99 -4.67 17.73 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 7 C -0.52 -15.12 9.66 -34.44 -0.33 -15.46 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 10 C -0.10 -2.01 5.15 -26.72 -0.14 -2.14 16 11 C -0.11 -1.76 4.50 -26.72 -0.12 -1.88 16 12 C -0.14 -1.71 5.70 -27.88 -0.16 -1.87 16 13 C 0.51 6.93 7.63 -10.99 -0.08 6.85 16 14 O -0.52 -8.68 13.14 5.55 0.07 -8.61 16 15 N -0.67 -7.71 5.37 -9.66 -0.05 -7.76 16 16 C 0.14 1.76 6.46 -83.36 -0.54 1.22 16 17 C -0.10 -1.26 8.69 -39.49 -0.34 -1.60 16 18 C -0.12 -1.23 10.06 -39.55 -0.40 -1.63 16 19 C -0.09 -0.83 10.03 -39.68 -0.40 -1.23 16 20 C -0.16 -1.47 6.27 -104.12 -0.65 -2.12 16 21 C 0.07 0.74 6.93 -38.81 -0.27 0.47 16 22 O -0.30 -3.08 11.11 -20.38 -0.23 -3.30 16 23 C 0.05 0.32 8.01 38.05 0.30 0.62 16 24 C -0.11 -0.66 7.12 -26.52 -0.19 -0.84 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 27 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 31 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.41 3.68 8.79 -40.82 -0.36 3.32 16 35 H 0.16 2.13 5.76 -52.49 -0.30 1.83 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 LS Contribution 340.60 15.07 5.13 5.13 Total: -1.00 -34.80 340.60 -8.58 -43.37 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.08 Total: -0.59 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -3.53 Total: -18.29 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.72 Total: -35.45 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.15 Total: -11.91 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.73 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.80 -8.58 -43.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600261961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.717 kcal (2) G-P(sol) polarization free energy of solvation -34.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds