Wall clock time and date at job start Tue Mar 31 2020 06:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00067 * 2 1 4 4 H 1.48498 * 109.46938 * 269.99664 * 3 2 1 5 5 H 1.48499 * 109.47096 * 29.99433 * 3 2 1 6 6 H 1.48497 * 109.47284 * 149.99728 * 3 2 1 7 7 C 1.37879 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00336 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99630 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46733 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46831 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46831 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46733 * 179.97438 * 12 11 10 14 14 O 1.21294 * 120.00235 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99339 * 180.02562 * 13 12 11 16 16 C 1.40126 * 119.99726 * 185.52884 * 15 13 12 17 17 C 1.38534 * 119.94115 * 24.84922 * 16 15 13 18 18 C 1.38190 * 120.27179 * 180.27362 * 17 16 15 19 19 C 1.38380 * 119.82392 * 359.64242 * 18 17 16 20 20 C 1.37836 * 120.11112 * 0.02562 * 19 18 17 21 21 C 1.38719 * 120.83477 * 0.29610 * 20 19 18 22 22 O 1.36200 * 111.28396 * 179.50243 * 21 20 19 23 23 C 1.43770 * 109.26193 * 18.60633 * 22 21 20 24 24 C 1.51657 * 132.11967 * 180.47077 * 20 19 18 25 25 H 0.96996 * 119.99734 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47331 * 60.00584 * 9 7 2 27 27 H 1.08996 * 109.47479 * 299.99673 * 9 7 2 28 28 H 1.09002 * 109.46906 * 60.00115 * 10 9 7 29 29 H 1.09001 * 109.47390 * 299.99861 * 10 9 7 30 30 H 1.09000 * 109.46822 * 60.00134 * 11 10 9 31 31 H 1.08996 * 109.46906 * 299.99631 * 11 10 9 32 32 H 1.09002 * 109.46906 * 60.00093 * 12 11 10 33 33 H 1.09002 * 109.47017 * 300.00230 * 12 11 10 34 34 H 0.96996 * 120.00443 * 5.52814 * 15 13 12 35 35 H 1.07997 * 119.86167 * 0.06754 * 17 16 15 36 36 H 1.07998 * 120.08933 * 179.61887 * 18 17 16 37 37 H 1.08004 * 119.94072 * 180.02562 * 19 18 17 38 38 H 1.08993 * 110.75044 * 90.79348 * 23 22 21 39 39 H 1.08998 * 110.74904 * 213.96677 * 23 22 21 40 40 H 1.09003 * 110.94203 * 46.01197 * 24 20 19 41 41 H 1.09007 * 110.97069 * 282.33889 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0022 12 6 6.0615 -4.0792 0.0015 13 6 7.5685 -4.0791 0.0020 14 8 8.1750 -3.0287 0.0035 15 7 8.2423 -5.2463 0.0010 16 6 9.6386 -5.2493 0.1185 17 6 10.2832 -4.1877 0.7322 18 6 11.6603 -4.1809 0.8467 19 6 12.3972 -5.2429 0.3526 20 6 11.7598 -6.3046 -0.2528 21 6 10.3788 -6.3248 -0.3822 22 8 9.9582 -7.4543 -1.0165 23 6 10.9985 -8.4451 -0.9603 24 6 12.2829 -7.5877 -0.8691 25 1 -0.4849 0.8400 -0.0004 26 1 3.8745 -0.6801 0.8912 27 1 3.8752 -0.6805 -0.8888 28 1 3.6585 -3.1502 -0.8893 29 1 3.6578 -3.1507 0.8907 30 1 5.9141 -2.1231 0.8927 31 1 5.9155 -2.1225 -0.8873 32 1 5.6989 -4.5922 -0.8893 33 1 5.6974 -4.5937 0.8907 34 1 7.7607 -6.0843 -0.0810 35 1 9.7072 -3.3604 1.1198 36 1 12.1602 -3.3489 1.3202 37 1 13.4736 -5.2397 0.4414 38 1 10.8882 -9.0710 -0.0748 39 1 11.0007 -9.0543 -1.8642 40 1 13.0208 -8.0592 -0.2199 41 1 12.6994 -7.4033 -1.8595 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600261961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:41 Heat of formation + Delta-G solvation = -79.430644 kcal Electronic energy + Delta-G solvation = -21688.084047 eV Core-core repulsion = 18338.795194 eV Total energy + Delta-G solvation = -3349.288853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.29423 -41.01606 -38.34136 -36.73500 -35.96653 -34.62858 -33.08597 -31.96520 -30.52497 -29.83742 -27.60948 -24.77888 -23.97929 -23.37686 -22.60578 -21.68125 -21.07556 -18.97516 -18.85695 -18.30636 -17.80213 -17.05426 -16.93256 -16.74932 -16.33689 -15.94887 -15.68194 -15.25969 -14.72168 -14.45024 -14.27983 -13.96085 -13.93098 -13.68473 -13.63521 -13.54079 -12.87112 -12.78202 -12.70401 -12.37434 -12.30760 -12.09109 -11.86119 -11.75724 -11.53430 -11.47679 -11.33596 -11.25927 -10.76075 -10.73752 -9.40256 -8.87500 -8.29625 -6.32682 0.19610 0.28651 1.35030 1.36377 1.49304 1.54309 1.97389 2.25641 2.36006 2.71292 3.05773 3.48337 3.63453 3.68993 3.97098 4.03428 4.13064 4.19169 4.23292 4.37733 4.42597 4.56931 4.62480 4.63413 4.74226 4.79254 4.83968 4.89879 4.93358 5.08839 5.13030 5.19884 5.25727 5.27971 5.46408 5.51378 5.60184 5.65437 5.65638 5.68738 6.17512 6.29519 6.35457 6.75375 7.05717 7.32077 8.86985 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036722 B = 0.002484 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.295562 B =11267.594566 C =11894.143533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.251 1.251 7 C -0.530 4.530 8 H 0.037 0.963 9 C -0.017 4.017 10 C -0.094 4.094 11 C -0.097 4.097 12 C -0.129 4.129 13 C 0.513 3.487 14 O -0.557 6.557 15 N -0.662 5.662 16 C 0.115 3.885 17 C -0.125 4.125 18 C -0.129 4.129 19 C -0.091 4.091 20 C -0.162 4.162 21 C 0.056 3.944 22 O -0.322 6.322 23 C 0.044 3.956 24 C -0.103 4.103 25 H 0.266 0.734 26 H 0.015 0.985 27 H 0.013 0.987 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.425 0.575 35 H 0.135 0.865 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.089 0.911 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.254 -19.522 0.142 36.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.772 3.228 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.175 1.175 7 C -0.568 4.568 8 H 0.055 0.945 9 C -0.055 4.055 10 C -0.132 4.132 11 C -0.135 4.135 12 C -0.168 4.168 13 C 0.303 3.697 14 O -0.435 6.435 15 N -0.307 5.307 16 C 0.020 3.980 17 C -0.145 4.145 18 C -0.147 4.147 19 C -0.109 4.109 20 C -0.163 4.163 21 C 0.009 3.991 22 O -0.237 6.237 23 C -0.030 4.030 24 C -0.140 4.140 25 H 0.075 0.925 26 H 0.033 0.967 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.263 0.737 35 H 0.153 0.847 36 H 0.167 0.833 37 H 0.173 0.827 38 H 0.107 0.893 39 H 0.146 0.854 40 H 0.135 0.865 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 30.243 -18.739 0.041 35.578 hybrid contribution -0.588 0.566 -0.053 0.818 sum 29.655 -18.173 -0.011 34.781 Atomic orbital electron populations 1.70062 1.08137 1.28076 1.52903 1.26011 0.95639 1.03452 0.94313 0.85681 0.79415 0.78555 0.79156 1.19280 1.20749 1.17483 1.21547 0.92146 0.93193 1.49936 0.94510 1.19578 0.93862 0.95855 0.96155 1.21341 0.93627 0.96797 1.01412 1.21295 0.94897 0.95247 1.02088 1.21709 0.88414 0.99747 1.06935 1.21421 0.91552 0.82647 0.74090 1.90650 1.70874 1.32692 1.49274 1.43515 1.04848 1.10382 1.71927 1.17368 0.83038 0.96000 1.01626 1.21258 0.96109 0.97885 0.99238 1.21264 0.92590 0.99567 1.01324 1.20647 1.01336 0.91743 0.97180 1.21064 0.92295 0.99623 1.03326 1.19343 0.92955 0.89887 0.96939 1.86803 1.43396 1.22129 1.71388 1.24159 0.83556 0.90029 1.05261 1.21896 0.98813 0.90605 1.02674 0.92528 0.96668 0.96887 0.92464 0.92360 0.92558 0.92772 0.86387 0.86086 0.73748 0.84748 0.83309 0.82736 0.89319 0.85371 0.86545 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 2 C 0.00 0.14 5.47 84.66 0.46 0.61 16 3 Si 0.95 46.20 27.47 68.60 1.88 48.08 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.25 -11.60 6.54 99.48 0.65 -10.95 16 7 C -0.53 -31.42 9.66 25.60 0.25 -31.17 16 8 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 9 C -0.02 -0.83 4.04 29.85 0.12 -0.71 16 10 C -0.09 -3.62 5.15 30.60 0.16 -3.46 16 11 C -0.10 -3.13 4.50 30.60 0.14 -2.99 16 12 C -0.13 -3.01 5.70 29.85 0.17 -2.84 16 13 C 0.51 13.75 7.63 87.66 0.67 14.41 16 14 O -0.56 -19.15 13.14 -3.07 -0.04 -19.20 16 15 N -0.66 -14.93 5.37 -302.87 -1.63 -16.55 16 16 C 0.11 2.81 6.46 38.27 0.25 3.06 16 17 C -0.12 -3.14 8.69 22.33 0.19 -2.94 16 18 C -0.13 -2.47 10.06 22.29 0.22 -2.24 16 19 C -0.09 -1.41 10.03 22.21 0.22 -1.19 16 20 C -0.16 -2.69 6.27 -19.54 -0.12 -2.81 16 21 C 0.06 1.18 6.93 22.77 0.16 1.34 16 22 O -0.32 -5.99 11.11 -95.84 -1.06 -7.06 16 23 C 0.04 0.41 8.01 72.56 0.58 0.99 16 24 C -0.10 -0.91 7.12 30.73 0.22 -0.69 16 25 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 26 H 0.01 0.73 7.20 -2.39 -0.02 0.72 16 27 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 31 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 32 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.42 7.18 8.79 -92.71 -0.81 6.37 16 35 H 0.13 3.92 5.76 -2.91 -0.02 3.90 16 36 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -77.34 340.60 3.30 -74.03 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.16 Total: 11.95 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 3.69 Total: -30.64 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -1.33 Total: -77.17 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -1.10 Total: -26.25 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.88 Total: 48.08 kcal Total: -77.34 3.30 -74.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600261961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.398 kcal (2) G-P(sol) polarization free energy of solvation -77.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds