Wall clock time and date at job start Tue Mar 31 2020 06:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46896 * 110.99805 * 2 1 4 4 C 1.46899 * 110.99769 * 123.95279 * 2 1 3 5 5 C 1.50703 * 109.47107 * 66.04798 * 4 2 1 6 6 C 1.38308 * 119.88878 * 105.00046 * 5 4 2 7 7 C 1.38005 * 120.14518 * 180.02562 * 6 5 4 8 8 C 1.39373 * 119.92965 * 359.97438 * 7 6 5 9 9 C 1.48401 * 120.11108 * 179.97438 * 8 7 6 10 10 C 1.41169 * 126.20101 * 359.68612 * 9 8 7 11 11 N 1.30725 * 108.28510 * 179.85374 * 10 9 8 12 12 N 1.40024 * 108.59425 * 0.40872 * 11 10 9 13 13 C 1.37312 * 125.96434 * 179.73527 * 12 11 10 14 14 H 1.07998 * 120.00022 * 179.97438 * 13 12 11 15 15 C 1.39004 * 120.00185 * 0.02562 * 13 12 11 16 16 N 1.31284 * 119.99962 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00363 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46970 * 59.99797 * 17 15 13 19 19 H 1.48498 * 109.47411 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47103 * 300.00236 * 17 15 13 21 21 C 1.36082 * 108.07058 * 359.73897 * 12 11 10 22 22 C 1.39296 * 119.78273 * 0.02562 * 8 7 6 23 23 C 1.38257 * 119.85038 * 359.72786 * 22 8 7 24 24 F 1.35100 * 119.96859 * 180.29372 * 23 22 8 25 25 H 1.08995 * 109.47407 * 296.04618 * 1 2 3 26 26 H 1.09006 * 109.46770 * 56.04664 * 1 2 3 27 27 H 1.09003 * 109.46848 * 176.04346 * 1 2 3 28 28 H 1.08998 * 109.47200 * 183.95269 * 3 2 1 29 29 H 1.08998 * 109.47707 * 303.95146 * 3 2 1 30 30 H 1.09001 * 109.47500 * 63.95378 * 3 2 1 31 31 H 1.09002 * 109.47043 * 186.04778 * 4 2 1 32 32 H 1.09001 * 109.47354 * 306.04839 * 4 2 1 33 33 H 1.07996 * 119.92901 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.03445 * 179.97438 * 7 6 5 35 35 H 1.08001 * 125.85561 * 0.02787 * 10 9 8 36 36 H 0.97001 * 120.00281 * 179.97438 * 16 15 13 37 37 H 1.08000 * 126.27395 * 179.97438 * 21 12 11 38 38 H 1.08007 * 120.07283 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6369 -2.2204 0.9729 6 6 2.6053 -3.1295 0.5872 7 6 2.2827 -4.4626 0.4342 8 6 0.9784 -4.8939 0.6694 9 6 0.6269 -6.3263 0.5056 10 6 1.5039 -7.3603 0.1124 11 7 0.8308 -8.4806 0.0844 12 7 -0.4955 -8.2137 0.4456 13 6 -1.5101 -9.1353 0.5272 14 1 -2.5021 -8.8220 0.8175 15 6 -1.2603 -10.4716 0.2372 16 7 -0.0544 -10.8525 -0.1152 17 14 -2.6404 -11.7254 0.3488 18 1 -3.7266 -11.3511 -0.5922 19 1 -2.1185 -13.0692 -0.0079 20 1 -3.1736 -11.7527 1.7345 21 6 -0.6033 -6.8815 0.7017 22 6 0.0055 -3.9757 1.0577 23 6 0.3398 -2.6432 1.2132 24 9 -0.6006 -1.7517 1.5954 25 1 -0.3634 0.4512 0.9232 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3633 -1.0253 -0.0709 28 1 3.0828 1.3433 -0.0708 29 1 1.5899 1.9164 -0.8524 30 1 1.7044 1.8724 0.9233 31 1 3.0797 -0.6611 1.1757 32 1 1.5611 -0.3872 2.0628 33 1 3.6160 -2.7955 0.4054 34 1 3.0401 -5.1709 0.1326 35 1 2.5519 -7.2459 -0.1221 36 1 0.1201 -11.7850 -0.3173 37 1 -1.4990 -6.3595 1.0044 38 1 -1.0067 -4.3048 1.2416 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600776625.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:15 Heat of formation + Delta-G solvation = 69.216658 kcal Electronic energy + Delta-G solvation = -21952.342647 eV Core-core repulsion = 18518.332070 eV Total energy + Delta-G solvation = -3434.010577 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.82205 -39.78821 -38.64109 -36.91708 -33.79965 -32.06382 -30.64961 -29.96621 -28.56890 -27.61332 -26.30159 -24.85155 -22.67063 -22.44944 -20.84857 -20.33905 -19.27438 -17.80868 -16.52516 -16.32094 -15.99884 -15.76660 -15.50010 -14.85969 -14.61966 -14.47932 -13.97147 -13.62249 -13.51038 -13.16904 -12.91055 -12.68311 -12.43999 -12.25563 -11.93029 -11.79424 -11.74178 -11.42079 -11.30274 -11.07486 -11.07037 -11.00080 -10.68484 -10.45102 -9.69873 -8.95230 -8.85867 -8.42215 -8.34915 -8.24602 -6.92532 -6.72666 -4.41956 1.49744 1.68037 2.89282 2.97495 3.01146 3.39449 3.71769 3.75703 4.11934 4.50231 4.60188 4.62334 4.86493 4.89176 5.01327 5.12587 5.28490 5.33345 5.44794 5.51356 5.60188 5.65493 5.70687 5.79386 5.88450 6.05939 6.08788 6.19070 6.43656 6.51410 6.61529 6.67047 6.76977 6.93949 6.94217 6.98621 7.05203 7.40311 7.47621 7.67901 7.98570 8.49286 9.17978 9.43234 10.22996 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.038768 B = 0.003150 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.066431 B = 8886.717658 C = 9404.930392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.542 5.542 3 C 0.024 3.976 4 C 0.104 3.896 5 C -0.158 4.158 6 C -0.065 4.065 7 C -0.151 4.151 8 C 0.088 3.912 9 C -0.260 4.260 10 C -0.007 4.007 11 N -0.264 5.264 12 N -0.140 5.140 13 C -0.326 4.326 14 H 0.119 0.881 15 C 0.048 3.952 16 N -0.767 5.767 17 Si 0.937 3.063 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.265 1.265 21 C -0.038 4.038 22 C -0.179 4.179 23 C 0.110 3.890 24 F -0.146 7.146 25 H 0.027 0.973 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.022 0.978 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.157 0.843 36 H 0.278 0.722 37 H 0.148 0.852 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.232 15.000 1.609 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.266 5.266 3 C -0.124 4.124 4 C -0.023 4.023 5 C -0.160 4.160 6 C -0.083 4.083 7 C -0.169 4.169 8 C 0.086 3.914 9 C -0.274 4.274 10 C -0.185 4.185 11 N -0.090 5.090 12 N 0.098 4.902 13 C -0.458 4.458 14 H 0.137 0.863 15 C -0.170 4.170 16 N -0.393 5.393 17 Si 0.760 3.240 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.190 1.190 21 C -0.191 4.191 22 C -0.199 4.199 23 C 0.091 3.909 24 F -0.124 7.124 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.174 0.826 36 H 0.088 0.912 37 H 0.166 0.834 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.521 13.235 0.884 13.502 hybrid contribution -1.131 0.907 0.992 1.756 sum 1.390 14.142 1.875 14.333 Atomic orbital electron populations 1.22924 0.87037 1.03882 0.99803 1.62077 1.08513 1.13087 1.42900 1.22381 1.00627 0.89100 1.00282 1.20851 1.00049 0.89917 0.91446 1.19389 0.92614 0.95535 1.08422 1.20648 0.98189 0.92417 0.97094 1.21092 0.96387 0.95373 1.04097 1.18048 0.91564 0.91267 0.90546 1.18189 0.94384 0.91681 1.23136 1.23716 0.99236 0.90975 1.04612 1.78133 0.87876 1.19968 1.22996 1.44839 1.06644 1.04059 1.34677 1.19978 0.89449 0.87739 1.48612 0.86303 1.25689 0.97852 0.98454 0.95007 1.70180 1.19577 1.17969 1.31555 0.85852 0.79807 0.78723 0.79618 1.18960 1.19987 1.18969 1.22017 0.98689 0.85593 1.12790 1.20982 1.00973 0.90863 1.07058 1.17344 0.85656 0.86725 1.01206 1.91395 1.64661 1.67530 1.88844 0.95489 0.92303 0.89556 0.91457 0.91474 0.95929 0.89989 0.94303 0.85911 0.85735 0.82582 0.91154 0.83418 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 7.99 60.07 0.48 0.62 16 2 N -0.54 -6.75 5.01 -252.72 -1.27 -8.02 16 3 C 0.02 0.23 9.57 60.06 0.57 0.81 16 4 C 0.10 1.30 5.04 -4.98 -0.03 1.27 16 5 C -0.16 -2.31 5.28 -104.49 -0.55 -2.86 16 6 C -0.06 -0.92 9.65 -39.64 -0.38 -1.30 16 7 C -0.15 -2.44 9.58 -39.24 -0.38 -2.82 16 8 C 0.09 1.64 5.88 -104.90 -0.62 1.03 16 9 C -0.26 -5.71 6.04 -105.27 -0.64 -6.35 16 10 C -0.01 -0.17 11.42 -16.91 -0.19 -0.36 16 11 N -0.26 -7.14 10.36 30.88 0.32 -6.82 16 12 N -0.14 -3.69 3.72 -11.34 -0.04 -3.73 16 13 C -0.33 -8.34 10.24 -14.81 -0.15 -8.49 16 14 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 15 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 16 N -0.77 -20.47 11.80 55.50 0.66 -19.82 16 17 Si 0.94 18.24 29.55 -169.99 -5.02 13.22 16 18 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 19 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 21 C -0.04 -0.89 10.84 -16.33 -0.18 -1.07 16 22 C -0.18 -3.11 9.54 -39.18 -0.37 -3.49 16 23 C 0.11 1.76 5.91 -39.47 -0.23 1.53 16 24 F -0.15 -2.23 13.19 2.25 0.03 -2.20 16 25 H 0.03 0.33 7.74 -51.93 -0.40 -0.07 16 26 H 0.06 0.66 8.12 -51.93 -0.42 0.23 16 27 H 0.09 1.24 4.64 -51.93 -0.24 1.00 16 28 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 29 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 30 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.87 7.87 -51.93 -0.41 0.46 16 32 H 0.04 0.48 8.05 -51.93 -0.42 0.07 16 33 H 0.12 1.41 7.99 -52.49 -0.42 0.99 16 34 H 0.12 1.86 7.05 -52.49 -0.37 1.49 16 35 H 0.16 3.08 7.34 -52.49 -0.39 2.70 16 36 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.15 2.96 7.28 -52.49 -0.38 2.58 16 38 H 0.13 2.13 7.02 -52.48 -0.37 1.77 16 LS Contribution 321.06 15.07 4.84 4.84 Total: -1.00 -29.16 321.06 -7.87 -37.04 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -4.63 Total: 5.88 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -2.76 Total: -20.38 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: -0.33 Total: -38.38 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.03 Total: -2.20 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.02 Total: 13.22 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.16 -7.87 -37.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600776625.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.252 kcal (2) G-P(sol) polarization free energy of solvation -29.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds