Wall clock time and date at job start Tue Mar 31 2020 06:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46896 * 110.99805 * 2 1 4 4 C 1.46899 * 110.99769 * 123.95279 * 2 1 3 5 5 C 1.50703 * 109.47107 * 66.04798 * 4 2 1 6 6 C 1.38308 * 119.88878 * 105.00046 * 5 4 2 7 7 C 1.38005 * 120.14518 * 180.02562 * 6 5 4 8 8 C 1.39373 * 119.92965 * 359.97438 * 7 6 5 9 9 C 1.48401 * 120.11108 * 179.97438 * 8 7 6 10 10 C 1.41169 * 126.20101 * 359.68612 * 9 8 7 11 11 N 1.30725 * 108.28510 * 179.85374 * 10 9 8 12 12 N 1.40024 * 108.59425 * 0.40872 * 11 10 9 13 13 C 1.37312 * 125.96434 * 179.73527 * 12 11 10 14 14 H 1.07998 * 120.00022 * 179.97438 * 13 12 11 15 15 C 1.39004 * 120.00185 * 0.02562 * 13 12 11 16 16 N 1.31284 * 119.99962 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00363 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46970 * 59.99797 * 17 15 13 19 19 H 1.48498 * 109.47411 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47103 * 300.00236 * 17 15 13 21 21 C 1.36082 * 108.07058 * 359.73897 * 12 11 10 22 22 C 1.39296 * 119.78273 * 0.02562 * 8 7 6 23 23 C 1.38257 * 119.85038 * 359.72786 * 22 8 7 24 24 F 1.35100 * 119.96859 * 180.29372 * 23 22 8 25 25 H 1.08995 * 109.47407 * 296.04618 * 1 2 3 26 26 H 1.09006 * 109.46770 * 56.04664 * 1 2 3 27 27 H 1.09003 * 109.46848 * 176.04346 * 1 2 3 28 28 H 1.08998 * 109.47200 * 183.95269 * 3 2 1 29 29 H 1.08998 * 109.47707 * 303.95146 * 3 2 1 30 30 H 1.09001 * 109.47500 * 63.95378 * 3 2 1 31 31 H 1.09002 * 109.47043 * 186.04778 * 4 2 1 32 32 H 1.09001 * 109.47354 * 306.04839 * 4 2 1 33 33 H 1.07996 * 119.92901 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.03445 * 179.97438 * 7 6 5 35 35 H 1.08001 * 125.85561 * 0.02787 * 10 9 8 36 36 H 0.97001 * 120.00281 * 179.97438 * 16 15 13 37 37 H 1.08000 * 126.27395 * 179.97438 * 21 12 11 38 38 H 1.08007 * 120.07283 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6369 -2.2204 0.9729 6 6 2.6053 -3.1295 0.5872 7 6 2.2827 -4.4626 0.4342 8 6 0.9784 -4.8939 0.6694 9 6 0.6269 -6.3263 0.5056 10 6 1.5039 -7.3603 0.1124 11 7 0.8308 -8.4806 0.0844 12 7 -0.4955 -8.2137 0.4456 13 6 -1.5101 -9.1353 0.5272 14 1 -2.5021 -8.8220 0.8175 15 6 -1.2603 -10.4716 0.2372 16 7 -0.0544 -10.8525 -0.1152 17 14 -2.6404 -11.7254 0.3488 18 1 -3.7266 -11.3511 -0.5922 19 1 -2.1185 -13.0692 -0.0079 20 1 -3.1736 -11.7527 1.7345 21 6 -0.6033 -6.8815 0.7017 22 6 0.0055 -3.9757 1.0577 23 6 0.3398 -2.6432 1.2132 24 9 -0.6006 -1.7517 1.5954 25 1 -0.3634 0.4512 0.9232 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3633 -1.0253 -0.0709 28 1 3.0828 1.3433 -0.0708 29 1 1.5899 1.9164 -0.8524 30 1 1.7044 1.8724 0.9233 31 1 3.0797 -0.6611 1.1757 32 1 1.5611 -0.3872 2.0628 33 1 3.6160 -2.7955 0.4054 34 1 3.0401 -5.1709 0.1326 35 1 2.5519 -7.2459 -0.1221 36 1 0.1201 -11.7850 -0.3173 37 1 -1.4990 -6.3595 1.0044 38 1 -1.0067 -4.3048 1.2416 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600776625.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:15 Heat of formation + Delta-G solvation = 52.403125 kcal Electronic energy + Delta-G solvation = -21953.071736 eV Core-core repulsion = 18518.332070 eV Total energy + Delta-G solvation = -3434.739666 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.05771 -41.53376 -39.90285 -37.95577 -35.56971 -33.45301 -32.38734 -31.29811 -30.09075 -28.48942 -27.75576 -26.40437 -23.97858 -23.67604 -22.19020 -21.91180 -20.87421 -19.49358 -17.88277 -17.56218 -17.44085 -17.14106 -16.82348 -16.10142 -15.80032 -15.50131 -15.34483 -15.22739 -15.00257 -14.77418 -14.20689 -13.95841 -13.51529 -13.40050 -13.35049 -13.19458 -12.97000 -12.85848 -12.73384 -12.48839 -12.24068 -12.14496 -12.09411 -11.80644 -11.38521 -10.77342 -10.35548 -10.13439 -9.64426 -9.30450 -8.56747 -8.53617 -6.32442 0.16699 0.40124 1.31555 1.37618 1.53169 1.76180 2.09932 2.20091 2.75526 2.95212 3.06672 3.28462 3.35387 3.77811 3.87823 4.04822 4.19727 4.31219 4.38347 4.46105 4.48163 4.59515 4.60392 4.71693 4.76456 4.79617 4.90999 5.03935 5.04401 5.08665 5.12245 5.23564 5.26053 5.45109 5.57209 5.86448 5.92708 6.01112 6.07217 6.14470 6.22755 6.68768 7.36745 7.59805 8.45328 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.038768 B = 0.003150 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.066431 B = 8886.717658 C = 9404.930392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.556 5.556 3 C 0.024 3.976 4 C 0.103 3.897 5 C -0.144 4.144 6 C -0.058 4.058 7 C -0.146 4.146 8 C 0.058 3.942 9 C -0.250 4.250 10 C -0.021 4.021 11 N -0.312 5.312 12 N -0.170 5.170 13 C -0.363 4.363 14 H 0.135 0.865 15 C 0.000 4.000 16 N -0.818 5.818 17 Si 1.016 2.984 18 H -0.255 1.255 19 H -0.273 1.273 20 H -0.255 1.255 21 C -0.048 4.048 22 C -0.184 4.184 23 C 0.101 3.899 24 F -0.143 7.143 25 H 0.027 0.973 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.028 0.972 31 H 0.108 0.892 32 H 0.039 0.961 33 H 0.161 0.839 34 H 0.137 0.863 35 H 0.184 0.816 36 H 0.279 0.721 37 H 0.170 0.830 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 17.461 1.826 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.280 5.280 3 C -0.123 4.123 4 C -0.024 4.024 5 C -0.146 4.146 6 C -0.076 4.076 7 C -0.165 4.165 8 C 0.056 3.944 9 C -0.264 4.264 10 C -0.198 4.198 11 N -0.139 5.139 12 N 0.066 4.934 13 C -0.494 4.494 14 H 0.152 0.848 15 C -0.213 4.213 16 N -0.446 5.446 17 Si 0.835 3.165 18 H -0.179 1.179 19 H -0.198 1.198 20 H -0.179 1.179 21 C -0.199 4.199 22 C -0.203 4.203 23 C 0.082 3.918 24 F -0.122 7.122 25 H 0.045 0.955 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.126 0.874 32 H 0.058 0.942 33 H 0.178 0.822 34 H 0.155 0.845 35 H 0.201 0.799 36 H 0.089 0.911 37 H 0.187 0.813 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.125 15.745 1.109 16.091 hybrid contribution -1.207 0.538 0.950 1.628 sum 1.918 16.284 2.059 16.525 Atomic orbital electron populations 1.22848 0.87581 1.02688 1.00364 1.62070 1.08210 1.14917 1.42790 1.22451 1.01486 0.87461 1.00936 1.20943 1.01667 0.88168 0.91581 1.19819 0.91835 0.97202 1.05710 1.21021 0.99799 0.91216 0.95609 1.21319 0.95496 0.96730 1.02963 1.18008 0.93230 0.89711 0.93488 1.18532 0.93503 0.93239 1.21098 1.24200 1.00529 0.90582 1.04524 1.78003 0.88946 1.22203 1.24770 1.45054 1.06643 1.05074 1.36612 1.20575 0.90241 0.88640 1.49935 0.84805 1.26812 1.00423 1.00195 0.93855 1.70332 1.22081 1.18406 1.33737 0.84692 0.76299 0.75469 0.80052 1.17947 1.19777 1.17919 1.22602 1.00171 0.85128 1.12010 1.21022 1.00797 0.91591 1.06920 1.17413 0.86493 0.86258 1.01640 1.91406 1.64721 1.67213 1.88851 0.95462 0.91193 0.91679 0.89972 0.90733 0.95350 0.87396 0.94245 0.82171 0.84544 0.79901 0.91104 0.81309 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.30 7.99 127.69 1.02 1.32 16 2 N -0.56 -11.96 5.01 -953.46 -4.78 -16.74 16 3 C 0.02 0.37 9.57 127.69 1.22 1.59 16 4 C 0.10 2.17 5.04 85.56 0.43 2.60 16 5 C -0.14 -3.76 5.28 -19.78 -0.10 -3.87 16 6 C -0.06 -1.44 9.65 22.23 0.21 -1.22 16 7 C -0.15 -4.42 9.58 22.49 0.22 -4.20 16 8 C 0.06 2.11 5.88 -20.04 -0.12 1.99 16 9 C -0.25 -11.11 6.04 -20.28 -0.12 -11.23 16 10 C -0.02 -1.00 11.42 85.58 0.98 -0.02 16 11 N -0.31 -17.59 10.36 -56.21 -0.58 -18.18 16 12 N -0.17 -9.30 3.72 -189.79 -0.71 -10.00 16 13 C -0.36 -19.27 10.24 84.02 0.86 -18.41 16 14 H 0.13 6.30 7.83 -2.91 -0.02 6.28 16 15 C 0.00 -0.02 5.50 84.96 0.47 0.45 16 16 N -0.82 -45.64 11.80 21.66 0.26 -45.39 16 17 Si 1.02 38.11 29.55 68.60 2.03 40.14 16 18 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 19 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 20 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 21 C -0.05 -2.27 10.84 83.60 0.91 -1.37 16 22 C -0.18 -6.26 9.54 22.53 0.22 -6.04 16 23 C 0.10 3.07 5.91 22.34 0.13 3.21 16 24 F -0.14 -4.20 13.19 44.97 0.59 -3.61 16 25 H 0.03 0.61 7.74 -2.39 -0.02 0.59 16 26 H 0.07 1.41 8.12 -2.38 -0.02 1.39 16 27 H 0.06 1.76 4.64 -2.39 -0.01 1.75 16 28 H 0.08 1.02 8.12 -2.39 -0.02 1.00 16 29 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16 30 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.11 1.73 7.87 -2.39 -0.02 1.71 16 32 H 0.04 0.85 8.05 -2.39 -0.02 0.83 16 33 H 0.16 2.81 7.99 -2.91 -0.02 2.78 16 34 H 0.14 3.75 7.05 -2.91 -0.02 3.73 16 35 H 0.18 7.24 7.34 -2.91 -0.02 7.22 16 36 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 37 H 0.17 6.93 7.28 -2.91 -0.02 6.91 16 38 H 0.13 4.20 7.02 -2.91 -0.02 4.18 16 Total: -1.00 -65.90 321.06 4.20 -61.70 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 1.08 Total: 27.29 kcal Atomic # 6 Polarization: -41.52 SS G_CDS: 6.32 Total: -35.20 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -5.81 Total: -90.31 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.59 Total: -3.61 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -65.90 4.20 -61.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600776625.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.099 kcal (2) G-P(sol) polarization free energy of solvation -65.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds