Wall clock time and date at job start Tue Mar 31 2020 06:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46898 * 111.00123 * 2 1 4 4 C 1.46903 * 110.99960 * 123.94928 * 2 1 3 5 5 C 1.50703 * 109.46935 * 66.05175 * 4 2 1 6 6 C 1.38003 * 119.95044 * 105.32230 * 5 4 2 7 7 C 1.39337 * 119.89716 * 180.27270 * 6 5 4 8 8 C 1.48412 * 120.09620 * 179.69843 * 7 6 5 9 9 C 1.41169 * 126.19776 * 359.74692 * 8 7 6 10 10 N 1.30737 * 108.28588 * 180.02562 * 9 8 7 11 11 N 1.40021 * 108.59130 * 0.02562 * 10 9 8 12 12 C 1.37307 * 125.96549 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00270 * 180.02562 * 12 11 10 14 14 C 1.39001 * 120.00035 * 359.74957 * 12 11 10 15 15 N 1.31284 * 119.99940 * 0.27647 * 14 12 11 16 16 Si 1.86798 * 120.00317 * 180.27796 * 14 12 11 17 17 H 1.48504 * 109.47252 * 59.99994 * 16 14 12 18 18 H 1.48498 * 109.47594 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46858 * 300.00059 * 16 14 12 20 20 C 1.36111 * 108.06587 * 0.26412 * 11 10 9 21 21 C 1.39372 * 119.80688 * 359.42448 * 7 6 5 22 22 C 1.37955 * 119.90211 * 0.27710 * 21 7 6 23 23 C 1.38520 * 119.94678 * 284.99393 * 5 4 2 24 24 F 1.35098 * 119.90781 * 0.02629 * 23 5 4 25 25 H 1.08998 * 109.46975 * 296.04636 * 1 2 3 26 26 H 1.08997 * 109.46890 * 56.05307 * 1 2 3 27 27 H 1.09002 * 109.46437 * 176.04792 * 1 2 3 28 28 H 1.09002 * 109.47712 * 183.95294 * 3 2 1 29 29 H 1.09009 * 109.47048 * 303.95249 * 3 2 1 30 30 H 1.08997 * 109.47630 * 63.94915 * 3 2 1 31 31 H 1.08994 * 109.47514 * 306.04772 * 4 2 1 32 32 H 1.09003 * 109.47110 * 186.04674 * 4 2 1 33 33 H 1.07992 * 120.05516 * 359.97438 * 6 5 4 34 34 H 1.08005 * 125.85919 * 0.02562 * 9 8 7 35 35 H 0.97005 * 119.99955 * 179.97438 * 15 14 12 36 36 H 1.07998 * 126.26967 * 179.73717 * 20 11 10 37 37 H 1.08001 * 120.04625 * 180.25192 * 21 7 6 38 38 H 1.08010 * 119.95007 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6370 -2.2204 0.9729 6 6 2.6037 -3.1297 0.5946 7 6 2.2699 -4.4732 0.4371 8 6 3.3045 -5.4537 0.0240 9 6 4.6605 -5.1702 -0.2480 10 7 5.2542 -6.2865 -0.5808 11 7 4.3134 -7.3226 -0.5374 12 6 4.5553 -8.6439 -0.8220 13 1 3.7544 -9.3656 -0.7579 14 6 5.8298 -9.0518 -1.1982 15 7 6.8034 -8.1746 -1.2762 16 14 6.1572 -10.8480 -1.5930 17 1 5.2960 -11.2706 -2.7266 18 1 7.5847 -11.0212 -1.9637 19 1 5.8512 -11.6802 -0.4018 20 6 3.1160 -6.7904 -0.1690 21 6 0.9627 -4.8947 0.6743 22 6 0.0041 -3.9798 1.0581 23 6 0.3392 -2.6437 1.2081 24 9 -0.6027 -1.7512 1.5842 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3632 -1.0253 -0.0708 28 1 3.0828 1.3433 -0.0708 29 1 1.5898 1.9163 -0.8525 30 1 1.7044 1.8724 0.9232 31 1 1.5611 -0.3872 2.0628 32 1 3.0797 -0.6610 1.1757 33 1 3.6164 -2.7996 0.4163 34 1 5.1273 -4.1980 -0.1908 35 1 7.6929 -8.4592 -1.5384 36 1 2.1876 -7.3288 -0.0484 37 1 0.7006 -5.9358 0.5573 38 1 -1.0090 -4.3056 1.2425 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600790966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:19 Heat of formation + Delta-G solvation = 70.065550 kcal Electronic energy + Delta-G solvation = -22009.303832 eV Core-core repulsion = 18575.330066 eV Total energy + Delta-G solvation = -3433.973766 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.76914 -39.77668 -38.62035 -36.91004 -33.75495 -31.76323 -31.24070 -30.17688 -27.74202 -27.53281 -26.44570 -25.08330 -22.78956 -22.29426 -21.07225 -20.26022 -18.85613 -17.62238 -17.18422 -16.38041 -16.00048 -15.64056 -15.34894 -14.81911 -14.58602 -14.44485 -13.87968 -13.49146 -13.49019 -13.07212 -13.00766 -12.69951 -12.41672 -12.21910 -11.95873 -11.85838 -11.65720 -11.45468 -11.29558 -11.26242 -11.04973 -10.93677 -10.58659 -10.41060 -9.66072 -8.91807 -8.71019 -8.66286 -8.29222 -8.23843 -6.85732 -6.70679 -4.39691 1.49504 1.66007 2.90163 2.98301 3.01955 3.40660 3.73051 3.77294 4.12356 4.55886 4.62602 4.65011 4.82487 4.90998 5.00903 5.13834 5.30737 5.31568 5.46699 5.57409 5.64541 5.68041 5.75299 5.77004 5.84335 6.06213 6.10799 6.15718 6.43300 6.54115 6.60568 6.72195 6.77736 6.90974 6.96606 7.00456 7.06722 7.40542 7.49330 7.70064 8.01155 8.51609 9.20673 9.46038 10.24988 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.033249 B = 0.003283 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.936060 B = 8526.116286 C = 9188.325830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.541 5.541 3 C 0.025 3.975 4 C 0.098 3.902 5 C -0.097 4.097 6 C -0.101 4.101 7 C 0.054 3.946 8 C -0.257 4.257 9 C -0.011 4.011 10 N -0.264 5.264 11 N -0.141 5.141 12 C -0.326 4.326 13 H 0.119 0.881 14 C 0.048 3.952 15 N -0.768 5.768 16 Si 0.936 3.064 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.265 1.265 20 C -0.040 4.040 21 C -0.119 4.119 22 C -0.137 4.137 23 C 0.048 3.952 24 F -0.149 7.149 25 H 0.026 0.974 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.022 0.978 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.156 0.844 35 H 0.277 0.723 36 H 0.148 0.852 37 H 0.126 0.874 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.912 9.916 3.351 13.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.264 5.264 3 C -0.124 4.124 4 C -0.029 4.029 5 C -0.098 4.098 6 C -0.120 4.120 7 C 0.052 3.948 8 C -0.271 4.271 9 C -0.188 4.188 10 N -0.090 5.090 11 N 0.096 4.904 12 C -0.458 4.458 13 H 0.137 0.863 14 C -0.170 4.170 15 N -0.393 5.393 16 Si 0.760 3.240 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.190 1.190 20 C -0.192 4.192 21 C -0.138 4.138 22 C -0.156 4.156 23 C 0.029 3.971 24 F -0.128 7.128 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.145 0.855 34 H 0.173 0.827 35 H 0.088 0.912 36 H 0.166 0.834 37 H 0.144 0.856 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.341 9.144 2.493 11.988 hybrid contribution -1.109 0.172 0.848 1.407 sum -8.451 9.316 3.341 13.014 Atomic orbital electron populations 1.22949 0.87091 1.03908 0.99730 1.62034 1.08452 1.13251 1.42693 1.22389 1.00838 0.88885 1.00251 1.20950 1.00550 0.89792 0.91617 1.19482 0.92228 0.95437 1.02653 1.20779 0.98812 0.91822 1.00580 1.18293 0.91899 0.91877 0.92694 1.18186 0.93856 0.92299 1.22717 1.23702 0.92689 0.97887 1.04557 1.78131 1.13249 0.93094 1.24512 1.44833 1.04124 1.06447 1.34963 1.19959 0.97659 0.80405 1.47809 0.86344 1.25679 0.95059 1.00846 0.95405 1.70184 1.01480 1.34267 1.33396 0.85862 0.78344 0.80232 0.79607 1.18986 1.20019 1.19001 1.21993 0.91276 0.93721 1.12206 1.20931 0.92226 0.99288 1.01380 1.20877 1.00316 0.91411 1.02990 1.17295 0.85971 0.86955 1.06926 1.91368 1.64447 1.67506 1.89472 0.95548 0.92354 0.89450 0.91274 0.91423 0.95911 0.94014 0.89573 0.85490 0.82727 0.91200 0.83422 0.85613 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 7.99 60.06 0.48 0.62 16 2 N -0.54 -7.07 5.01 -252.72 -1.27 -8.33 16 3 C 0.02 0.25 9.57 60.06 0.57 0.83 16 4 C 0.10 1.30 5.04 -4.97 -0.03 1.27 16 5 C -0.10 -1.48 5.27 -104.60 -0.55 -2.03 16 6 C -0.10 -1.68 9.20 -39.26 -0.36 -2.04 16 7 C 0.05 1.00 5.88 -104.88 -0.62 0.39 16 8 C -0.26 -5.59 6.04 -105.27 -0.64 -6.23 16 9 C -0.01 -0.25 11.42 -16.91 -0.19 -0.44 16 10 N -0.26 -7.14 10.36 30.88 0.32 -6.82 16 11 N -0.14 -3.70 3.72 -11.34 -0.04 -3.74 16 12 C -0.33 -8.31 10.24 -14.82 -0.15 -8.47 16 13 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 14 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 15 N -0.77 -20.49 11.80 55.50 0.66 -19.84 16 16 Si 0.94 18.20 29.55 -169.99 -5.02 13.17 16 17 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 18 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 20 C -0.04 -0.91 10.84 -16.33 -0.18 -1.08 16 21 C -0.12 -1.94 9.56 -39.26 -0.38 -2.32 16 22 C -0.14 -2.03 10.01 -39.56 -0.40 -2.42 16 23 C 0.05 0.74 5.93 -39.36 -0.23 0.50 16 24 F -0.15 -2.16 13.16 2.25 0.03 -2.13 16 25 H 0.03 0.32 7.74 -51.93 -0.40 -0.08 16 26 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 27 H 0.09 1.22 4.61 -51.93 -0.24 0.98 16 28 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 29 H 0.07 0.62 8.12 -51.92 -0.42 0.20 16 30 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.54 8.05 -51.93 -0.42 0.12 16 32 H 0.09 1.03 7.87 -51.93 -0.41 0.62 16 33 H 0.13 2.00 6.98 -52.49 -0.37 1.63 16 34 H 0.16 3.10 7.34 -52.48 -0.39 2.71 16 35 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.15 2.87 7.28 -52.49 -0.38 2.49 16 37 H 0.13 1.88 7.01 -52.49 -0.37 1.51 16 38 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 321.02 15.07 4.84 4.84 Total: -1.00 -29.19 321.02 -7.87 -37.06 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.63 Total: 6.13 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -2.76 Total: -20.33 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: -0.33 Total: -38.74 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.03 Total: -2.13 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.02 Total: 13.17 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.19 -7.87 -37.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600790966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.128 kcal (2) G-P(sol) polarization free energy of solvation -29.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds