Wall clock time and date at job start Tue Mar 31 2020 06:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46907 * 111.00018 * 2 1 4 4 C 1.46898 * 111.00126 * 123.95282 * 2 1 3 5 5 C 1.50706 * 109.46897 * 169.99852 * 4 2 1 6 6 C 1.38352 * 119.90797 * 90.00597 * 5 4 2 7 7 C 1.38286 * 120.26311 * 180.02562 * 6 5 4 8 8 C 1.38255 * 120.09582 * 359.97438 * 7 6 5 9 9 F 1.35102 * 120.08627 * 179.97438 * 8 7 6 10 10 C 1.39535 * 119.82922 * 359.97438 * 8 7 6 11 11 C 1.48405 * 120.13378 * 180.02562 * 10 8 7 12 12 C 1.41168 * 126.20388 * 129.97601 * 11 10 8 13 13 N 1.30732 * 108.28666 * 180.29937 * 12 11 10 14 14 N 1.40025 * 108.59452 * 359.58181 * 13 12 11 15 15 C 1.37304 * 125.96620 * 180.17384 * 14 13 12 16 16 H 1.08002 * 120.00030 * 174.48320 * 15 14 13 17 17 C 1.39001 * 120.00046 * 354.48694 * 15 14 13 18 18 N 1.31279 * 120.00235 * 5.97749 * 17 15 14 19 19 Si 1.86798 * 119.99853 * 185.98075 * 17 15 14 20 20 H 1.48502 * 109.47602 * 94.97786 * 19 17 15 21 21 H 1.48505 * 109.47101 * 214.97909 * 19 17 15 22 22 H 1.48499 * 109.46993 * 334.97715 * 19 17 15 23 23 C 1.36113 * 108.06310 * 0.42544 * 14 13 12 24 24 C 1.38013 * 119.91859 * 270.29844 * 5 4 2 25 25 H 1.08995 * 109.47023 * 296.04205 * 1 2 3 26 26 H 1.08999 * 109.47109 * 56.04901 * 1 2 3 27 27 H 1.09001 * 109.46884 * 176.04459 * 1 2 3 28 28 H 1.08993 * 109.47320 * 183.95438 * 3 2 1 29 29 H 1.09004 * 109.46661 * 303.95475 * 3 2 1 30 30 H 1.09001 * 109.46607 * 63.95212 * 3 2 1 31 31 H 1.09007 * 109.46734 * 50.00557 * 4 2 1 32 32 H 1.08995 * 109.47213 * 289.99826 * 4 2 1 33 33 H 1.07995 * 119.87272 * 359.97438 * 6 5 4 34 34 H 1.08000 * 119.94922 * 179.97438 * 7 6 5 35 35 H 1.08002 * 125.85413 * 0.02843 * 12 11 10 36 36 H 0.96997 * 120.00112 * 180.02562 * 18 17 15 37 37 H 1.07998 * 126.27547 * 179.75628 * 23 14 13 38 38 H 1.08004 * 120.04766 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4818 -0.9525 0.9727 6 6 4.3566 -0.0165 1.4951 7 6 5.7219 -0.1801 1.3477 8 6 6.2197 -1.2818 0.6769 9 9 7.5535 -1.4411 0.5325 10 6 5.3410 -2.2287 0.1495 11 6 5.8680 -3.4141 -0.5713 12 6 5.5082 -4.7592 -0.3389 13 7 6.1863 -5.5136 -1.1636 14 7 6.9944 -4.6917 -1.9587 15 6 7.8497 -5.1141 -2.9463 16 1 8.3628 -4.3904 -3.5622 17 6 8.0551 -6.4732 -3.1533 18 7 7.3454 -7.3535 -2.4864 19 14 9.3411 -7.0470 -4.3806 20 1 10.6153 -7.3236 -3.6698 21 1 8.8687 -8.2857 -5.0499 22 1 9.5616 -5.9881 -5.3981 23 6 6.7882 -3.4014 -1.5777 24 6 3.9666 -2.0532 0.2959 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0827 1.3433 -0.0709 29 1 1.5898 1.9163 -0.8525 30 1 1.7043 1.8723 0.9233 31 1 1.5090 -1.7407 1.1755 32 1 1.7976 -0.2247 2.0627 33 1 3.9718 0.8457 2.0194 34 1 6.4001 0.5539 1.7571 35 1 4.7981 -5.1060 0.3973 36 1 7.4890 -8.3018 -2.6306 37 1 7.2657 -2.5275 -1.9958 38 1 3.2817 -2.7799 -0.1155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600791542.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:12 Heat of formation + Delta-G solvation = 62.559899 kcal Electronic energy + Delta-G solvation = -22043.439768 eV Core-core repulsion = 18609.140533 eV Total energy + Delta-G solvation = -3434.299235 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.20525 -39.62452 -38.90085 -36.80774 -33.67257 -31.69951 -31.10757 -30.20855 -27.86620 -27.52791 -26.34657 -25.05484 -22.63859 -22.29850 -20.99704 -20.30108 -18.94407 -17.45732 -16.91947 -16.02901 -15.59945 -15.54897 -15.40076 -14.96003 -14.86295 -14.44272 -13.87484 -13.46582 -13.22737 -13.10528 -12.93831 -12.79925 -12.45709 -12.23538 -11.98357 -11.78609 -11.70134 -11.52921 -11.31298 -11.24737 -11.11337 -10.81905 -10.64700 -10.43729 -9.51198 -8.98403 -8.54757 -8.49809 -8.21359 -8.09238 -7.00254 -6.60133 -4.30108 1.51271 1.63567 2.95614 3.05187 3.09968 3.51213 3.77198 3.81861 4.10525 4.36148 4.66041 4.79111 4.87700 4.97021 5.00210 5.08325 5.21451 5.27619 5.37578 5.40307 5.51153 5.59945 5.71644 5.72743 5.85287 5.89361 6.21679 6.31136 6.34825 6.55033 6.65975 6.74455 6.85025 6.87993 6.94857 6.99502 7.12775 7.37851 7.49318 7.81437 8.12801 8.63368 9.34171 9.59172 10.36404 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.024087 B = 0.003664 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.173429 B = 7641.021392 C = 8222.940285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.021 3.979 4 C 0.099 3.901 5 C -0.092 4.092 6 C -0.115 4.115 7 C -0.154 4.154 8 C 0.087 3.913 9 F -0.137 7.137 10 C 0.017 3.983 11 C -0.262 4.262 12 C -0.016 4.016 13 N -0.263 5.263 14 N -0.145 5.145 15 C -0.328 4.328 16 H 0.118 0.882 17 C 0.049 3.951 18 N -0.772 5.772 19 Si 0.934 3.066 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.263 1.263 23 C -0.029 4.029 24 C -0.075 4.075 25 H 0.022 0.978 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.022 0.978 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.153 0.847 36 H 0.275 0.725 37 H 0.145 0.855 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.693 13.146 5.748 16.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C -0.127 4.127 4 C -0.028 4.028 5 C -0.093 4.093 6 C -0.134 4.134 7 C -0.173 4.173 8 C 0.067 3.933 9 F -0.116 7.116 10 C 0.014 3.986 11 C -0.276 4.276 12 C -0.193 4.193 13 N -0.091 5.091 14 N 0.091 4.909 15 C -0.460 4.460 16 H 0.135 0.865 17 C -0.168 4.168 18 N -0.398 5.398 19 Si 0.758 3.242 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.187 1.187 23 C -0.180 4.180 24 C -0.094 4.094 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.171 0.829 36 H 0.085 0.915 37 H 0.162 0.838 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.279 11.387 4.895 14.906 hybrid contribution 0.407 1.025 0.476 1.201 sum -7.872 12.412 5.371 15.649 Atomic orbital electron populations 1.22387 0.87332 1.02377 1.00239 1.61959 1.07439 1.14041 1.43093 1.22471 1.01898 0.88443 0.99911 1.21016 0.91874 0.98750 0.91199 1.19537 0.94322 0.95614 0.99780 1.20621 0.92061 0.99036 1.01691 1.20886 0.96181 0.97826 1.02376 1.17869 0.77542 0.96688 1.01187 1.91473 1.30547 1.95555 1.94019 1.18327 0.91944 0.92751 0.95558 1.18008 1.10590 0.91811 1.07153 1.23596 1.02905 0.90823 1.01996 1.78063 1.07990 1.16048 1.06962 1.44757 1.23317 1.02396 1.20388 1.19953 1.21380 0.93118 1.11568 0.86493 1.25641 0.97623 0.95643 0.97926 1.70203 1.32891 1.02224 1.34463 0.85810 0.79818 0.78928 0.79626 1.19579 1.20062 1.18690 1.21944 1.04991 0.88619 1.02460 1.20952 0.93802 0.97128 0.97552 0.95899 0.91398 0.91224 0.90531 0.91658 0.95945 0.89842 0.94167 0.86423 0.85653 0.82939 0.91469 0.83770 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.57 60.06 0.57 0.80 16 2 N -0.54 -6.16 5.01 -252.72 -1.27 -7.43 16 3 C 0.02 0.21 9.13 60.07 0.55 0.76 16 4 C 0.10 1.12 5.11 -4.97 -0.03 1.09 16 5 C -0.09 -1.26 4.88 -104.66 -0.51 -1.77 16 6 C -0.12 -1.48 7.95 -39.52 -0.31 -1.80 16 7 C -0.15 -2.23 10.02 -39.56 -0.40 -2.63 16 8 C 0.09 1.58 7.24 -39.09 -0.28 1.30 16 9 F -0.14 -2.74 16.36 2.25 0.04 -2.70 16 10 C 0.02 0.32 5.76 -104.82 -0.60 -0.28 16 11 C -0.26 -6.08 5.38 -105.27 -0.57 -6.65 16 12 C -0.02 -0.39 11.94 -16.91 -0.20 -0.60 16 13 N -0.26 -7.46 10.38 30.88 0.32 -7.14 16 14 N -0.14 -4.02 3.72 -11.34 -0.04 -4.06 16 15 C -0.33 -8.85 10.23 -14.82 -0.15 -9.00 16 16 H 0.12 2.86 7.84 -52.49 -0.41 2.45 16 17 C 0.05 1.27 5.50 -17.51 -0.10 1.17 16 18 N -0.77 -21.40 11.83 55.50 0.66 -20.74 16 19 Si 0.93 19.10 29.56 -169.99 -5.02 14.07 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 C -0.03 -0.71 10.79 -16.32 -0.18 -0.89 16 24 C -0.08 -1.25 9.38 -39.26 -0.37 -1.62 16 25 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 27 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 28 H 0.08 0.85 6.16 -51.93 -0.32 0.53 16 29 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 30 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.08 0.90 8.01 -51.92 -0.42 0.48 16 32 H 0.04 0.40 8.06 -51.93 -0.42 -0.02 16 33 H 0.12 1.20 8.03 -52.49 -0.42 0.78 16 34 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.15 3.24 8.06 -52.49 -0.42 2.82 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.14 3.26 8.06 -52.49 -0.42 2.84 16 38 H 0.13 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 330.34 15.07 4.98 4.98 Total: -1.00 -30.97 330.34 -7.83 -38.81 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -4.92 Total: 4.32 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -2.57 Total: -20.11 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: -0.33 Total: -39.37 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.70 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.97 -7.83 -38.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600791542.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.365 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds