Wall clock time and date at job start Tue Mar 31 2020 06:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46907 * 111.00018 * 2 1 4 4 C 1.46898 * 111.00126 * 123.95282 * 2 1 3 5 5 C 1.50706 * 109.46897 * 169.99852 * 4 2 1 6 6 C 1.38352 * 119.90797 * 90.00597 * 5 4 2 7 7 C 1.38286 * 120.26311 * 180.02562 * 6 5 4 8 8 C 1.38255 * 120.09582 * 359.97438 * 7 6 5 9 9 F 1.35102 * 120.08627 * 179.97438 * 8 7 6 10 10 C 1.39535 * 119.82922 * 359.97438 * 8 7 6 11 11 C 1.48405 * 120.13378 * 180.02562 * 10 8 7 12 12 C 1.41168 * 126.20388 * 129.97601 * 11 10 8 13 13 N 1.30732 * 108.28666 * 180.29937 * 12 11 10 14 14 N 1.40025 * 108.59452 * 359.58181 * 13 12 11 15 15 C 1.37304 * 125.96620 * 180.17384 * 14 13 12 16 16 H 1.08002 * 120.00030 * 174.48320 * 15 14 13 17 17 C 1.39001 * 120.00046 * 354.48694 * 15 14 13 18 18 N 1.31279 * 120.00235 * 5.97749 * 17 15 14 19 19 Si 1.86798 * 119.99853 * 185.98075 * 17 15 14 20 20 H 1.48502 * 109.47602 * 94.97786 * 19 17 15 21 21 H 1.48505 * 109.47101 * 214.97909 * 19 17 15 22 22 H 1.48499 * 109.46993 * 334.97715 * 19 17 15 23 23 C 1.36113 * 108.06310 * 0.42544 * 14 13 12 24 24 C 1.38013 * 119.91859 * 270.29844 * 5 4 2 25 25 H 1.08995 * 109.47023 * 296.04205 * 1 2 3 26 26 H 1.08999 * 109.47109 * 56.04901 * 1 2 3 27 27 H 1.09001 * 109.46884 * 176.04459 * 1 2 3 28 28 H 1.08993 * 109.47320 * 183.95438 * 3 2 1 29 29 H 1.09004 * 109.46661 * 303.95475 * 3 2 1 30 30 H 1.09001 * 109.46607 * 63.95212 * 3 2 1 31 31 H 1.09007 * 109.46734 * 50.00557 * 4 2 1 32 32 H 1.08995 * 109.47213 * 289.99826 * 4 2 1 33 33 H 1.07995 * 119.87272 * 359.97438 * 6 5 4 34 34 H 1.08000 * 119.94922 * 179.97438 * 7 6 5 35 35 H 1.08002 * 125.85413 * 0.02843 * 12 11 10 36 36 H 0.96997 * 120.00112 * 180.02562 * 18 17 15 37 37 H 1.07998 * 126.27547 * 179.75628 * 23 14 13 38 38 H 1.08004 * 120.04766 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4818 -0.9525 0.9727 6 6 4.3566 -0.0165 1.4951 7 6 5.7219 -0.1801 1.3477 8 6 6.2197 -1.2818 0.6769 9 9 7.5535 -1.4411 0.5325 10 6 5.3410 -2.2287 0.1495 11 6 5.8680 -3.4141 -0.5713 12 6 5.5082 -4.7592 -0.3389 13 7 6.1863 -5.5136 -1.1636 14 7 6.9944 -4.6917 -1.9587 15 6 7.8497 -5.1141 -2.9463 16 1 8.3628 -4.3904 -3.5622 17 6 8.0551 -6.4732 -3.1533 18 7 7.3454 -7.3535 -2.4864 19 14 9.3411 -7.0470 -4.3806 20 1 10.6153 -7.3236 -3.6698 21 1 8.8687 -8.2857 -5.0499 22 1 9.5616 -5.9881 -5.3981 23 6 6.7882 -3.4014 -1.5777 24 6 3.9666 -2.0532 0.2959 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0827 1.3433 -0.0709 29 1 1.5898 1.9163 -0.8525 30 1 1.7043 1.8723 0.9233 31 1 1.5090 -1.7407 1.1755 32 1 1.7976 -0.2247 2.0627 33 1 3.9718 0.8457 2.0194 34 1 6.4001 0.5539 1.7571 35 1 4.7981 -5.1060 0.3973 36 1 7.4890 -8.3018 -2.6306 37 1 7.2657 -2.5275 -1.9958 38 1 3.2817 -2.7799 -0.1155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600791542.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:12 Heat of formation + Delta-G solvation = 43.994329 kcal Electronic energy + Delta-G solvation = -22044.244832 eV Core-core repulsion = 18609.140533 eV Total energy + Delta-G solvation = -3435.104299 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.66662 -41.45169 -40.13622 -37.76109 -35.56685 -33.23659 -32.29327 -32.05383 -29.46752 -28.38033 -27.34759 -26.94943 -23.90476 -23.45159 -22.49883 -21.92693 -20.62852 -19.27293 -18.28744 -17.50483 -17.26013 -16.64326 -16.48869 -16.19653 -15.96699 -15.79846 -15.22606 -15.17877 -14.92682 -14.48812 -14.33810 -14.08848 -13.57355 -13.51540 -13.16622 -13.14059 -12.94479 -12.84994 -12.65888 -12.55247 -12.36943 -12.15802 -12.04516 -11.87252 -11.36014 -10.84121 -10.21071 -9.98791 -9.55239 -9.19064 -8.77603 -8.52606 -6.32958 0.23531 0.38786 1.28238 1.36754 1.54609 1.74405 2.10178 2.22214 2.71949 2.77992 3.02988 3.32786 3.50399 3.86265 3.91474 4.04622 4.27058 4.32752 4.38089 4.45124 4.50393 4.58220 4.66716 4.72023 4.84214 4.87191 4.90933 5.08761 5.09545 5.12633 5.15626 5.26468 5.31360 5.42982 5.62019 5.72742 5.88730 6.06615 6.14825 6.19390 6.23731 6.69826 7.39297 7.61688 8.47230 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.024087 B = 0.003664 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.173429 B = 7641.021392 C = 8222.940285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.566 5.566 3 C 0.020 3.980 4 C 0.101 3.899 5 C -0.082 4.082 6 C -0.093 4.093 7 C -0.144 4.144 8 C 0.064 3.936 9 F -0.156 7.156 10 C -0.019 4.019 11 C -0.247 4.247 12 C -0.030 4.030 13 N -0.310 5.310 14 N -0.171 5.171 15 C -0.366 4.366 16 H 0.131 0.869 17 C 0.000 4.000 18 N -0.820 5.820 19 Si 1.018 2.982 20 H -0.266 1.266 21 H -0.270 1.270 22 H -0.247 1.247 23 C -0.044 4.044 24 C -0.078 4.078 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.177 0.823 36 H 0.278 0.722 37 H 0.158 0.842 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.662 15.738 6.618 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.291 5.291 3 C -0.127 4.127 4 C -0.027 4.027 5 C -0.082 4.082 6 C -0.111 4.111 7 C -0.163 4.163 8 C 0.044 3.956 9 F -0.134 7.134 10 C -0.021 4.021 11 C -0.261 4.261 12 C -0.207 4.207 13 N -0.138 5.138 14 N 0.063 4.937 15 C -0.497 4.497 16 H 0.148 0.852 17 C -0.212 4.212 18 N -0.448 5.448 19 Si 0.836 3.164 20 H -0.191 1.191 21 H -0.195 1.195 22 H -0.171 1.171 23 C -0.194 4.194 24 C -0.098 4.098 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.177 0.823 34 H 0.172 0.828 35 H 0.194 0.806 36 H 0.088 0.912 37 H 0.175 0.825 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.268 14.019 5.776 17.770 hybrid contribution 0.522 0.448 0.353 0.773 sum -8.745 14.467 6.129 17.981 Atomic orbital electron populations 1.22404 0.85885 1.02674 1.01219 1.61916 1.08926 1.14889 1.43329 1.22480 1.01092 0.88015 1.01159 1.21024 0.89798 0.99511 0.92318 1.19836 0.96231 0.94241 0.97936 1.21093 0.91081 0.99296 0.99646 1.21211 0.97481 0.96738 1.00834 1.18185 0.76696 0.97915 1.02778 1.91424 1.31833 1.95812 1.94366 1.18289 0.93457 0.92551 0.97823 1.18395 1.08908 0.92835 1.05953 1.24053 1.03043 0.91521 1.02035 1.77940 1.09405 1.17942 1.08506 1.45002 1.24283 1.03073 1.21312 1.20567 1.22286 0.94395 1.12421 0.85173 1.26817 0.99527 0.95140 0.99741 1.70350 1.35047 1.02669 1.36706 0.84606 0.76281 0.78594 0.76901 1.19086 1.19463 1.17054 1.22422 1.05585 0.88433 1.03009 1.20953 0.92439 0.98284 0.98074 0.94484 0.90848 0.91305 0.91700 0.91141 0.94133 0.89658 0.91810 0.82332 0.82788 0.80576 0.91177 0.82460 0.85967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.57 127.69 1.22 1.61 16 2 N -0.57 -11.10 5.01 -953.45 -4.78 -15.88 16 3 C 0.02 0.34 9.13 127.69 1.17 1.50 16 4 C 0.10 1.91 5.11 85.56 0.44 2.35 16 5 C -0.08 -2.00 4.88 -19.89 -0.10 -2.10 16 6 C -0.09 -1.99 7.95 22.31 0.18 -1.81 16 7 C -0.14 -3.73 10.02 22.29 0.22 -3.51 16 8 C 0.06 2.28 7.24 22.59 0.16 2.44 16 9 F -0.16 -6.26 16.36 44.97 0.74 -5.52 16 10 C -0.02 -0.74 5.76 -19.99 -0.12 -0.85 16 11 C -0.25 -11.88 5.38 -20.28 -0.11 -11.99 16 12 C -0.03 -1.54 11.94 85.58 1.02 -0.52 16 13 N -0.31 -18.43 10.38 -56.21 -0.58 -19.02 16 14 N -0.17 -9.96 3.72 -189.78 -0.71 -10.67 16 15 C -0.37 -20.52 10.23 84.02 0.86 -19.66 16 16 H 0.13 6.58 7.84 -2.91 -0.02 6.56 16 17 C 0.00 -0.01 5.50 84.96 0.47 0.46 16 18 N -0.82 -47.46 11.83 21.66 0.26 -47.20 16 19 Si 1.02 39.85 29.56 68.60 2.03 41.88 16 20 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 21 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 22 H -0.25 -8.94 7.11 99.48 0.71 -8.24 16 23 C -0.04 -2.29 10.79 83.59 0.90 -1.38 16 24 C -0.08 -2.53 9.38 22.48 0.21 -2.32 16 25 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 27 H 0.07 1.02 8.12 -2.39 -0.02 1.00 16 28 H 0.06 1.20 6.16 -2.39 -0.01 1.18 16 29 H 0.07 1.07 8.12 -2.38 -0.02 1.05 16 30 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 1.60 8.01 -2.38 -0.02 1.59 16 32 H 0.06 0.95 8.06 -2.39 -0.02 0.93 16 33 H 0.16 2.22 8.03 -2.91 -0.02 2.19 16 34 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.18 7.76 8.06 -2.91 -0.02 7.74 16 36 H 0.28 14.68 8.31 -92.71 -0.77 13.91 16 37 H 0.16 7.43 8.06 -2.91 -0.02 7.41 16 38 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -71.35 330.34 4.54 -66.80 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 1.06 Total: 25.39 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 6.53 Total: -35.79 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -5.81 Total: -92.77 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.74 Total: -5.52 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -71.35 4.54 -66.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600791542.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.797 kcal (2) G-P(sol) polarization free energy of solvation -71.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds