Wall clock time and date at job start Tue Mar 31 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47195 * 2 1 4 4 C 1.52995 * 109.47500 * 240.00091 * 2 1 3 5 5 C 1.50695 * 109.47282 * 64.99896 * 4 2 1 6 6 H 1.08005 * 120.00198 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00134 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99834 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99892 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47332 * 59.99660 * 9 7 5 11 11 H 1.48499 * 109.46904 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47163 * 299.99754 * 9 7 5 13 13 C 1.53001 * 109.46858 * 119.99870 * 2 1 3 14 14 N 1.46905 * 109.47410 * 294.99921 * 13 2 1 15 15 C 1.46896 * 111.00013 * 180.02562 * 14 13 2 16 16 C 1.50701 * 109.47031 * 180.02562 * 15 14 13 17 17 C 1.31821 * 122.55382 * 260.02049 * 16 15 14 18 18 S 1.75301 * 111.40285 * 179.97438 * 17 16 15 19 19 C 1.75900 * 92.19267 * 0.02562 * 18 17 16 20 20 C 1.39853 * 130.55891 * 179.97438 * 19 18 17 21 21 C 1.37473 * 120.17902 * 179.97438 * 20 19 18 22 22 C 1.38846 * 120.18441 * 0.04613 * 21 20 19 23 23 C 1.36095 * 120.59536 * 359.97438 * 22 21 20 24 24 C 1.39741 * 109.68395 * 359.97438 * 19 18 17 25 25 H 1.08999 * 109.47129 * 60.00021 * 1 2 3 26 26 H 1.09004 * 109.47195 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47621 * 299.99903 * 1 2 3 28 28 H 1.09004 * 109.47366 * 184.99907 * 4 2 1 29 29 H 1.09007 * 109.46867 * 304.99909 * 4 2 1 30 30 H 0.97009 * 119.99808 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47020 * 175.00643 * 13 2 1 32 32 H 1.08998 * 109.47249 * 55.00580 * 13 2 1 33 33 H 1.00900 * 110.99518 * 56.04730 * 14 13 2 34 34 H 1.08991 * 109.47641 * 60.00064 * 15 14 13 35 35 H 1.09004 * 109.47060 * 299.99867 * 15 14 13 36 36 H 1.07997 * 124.29825 * 359.96196 * 17 16 15 37 37 H 1.08004 * 119.91452 * 0.02562 * 20 19 18 38 38 H 1.07992 * 119.90874 * 180.02562 * 21 20 19 39 39 H 1.07997 * 119.70593 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.77544 * 179.69957 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0800 0.9742 -2.3757 7 6 1.9925 -0.4022 -3.7283 8 7 2.6749 -1.5197 -3.8511 9 14 1.4990 0.5629 -5.2496 10 1 2.0920 1.9229 -5.1870 11 1 1.9940 -0.1372 -6.4620 12 1 0.0190 0.6705 -5.3090 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.1256 -0.6265 3.6672 16 6 1.7086 0.1787 4.8709 17 6 2.5317 0.9954 5.4978 18 16 1.7445 1.7813 6.8527 19 6 0.2262 0.9500 6.5398 20 6 -1.0010 1.0158 7.2074 21 6 -2.0652 0.2616 6.7731 22 6 -1.9274 -0.5703 5.6701 23 6 -0.7420 -0.6497 5.0062 24 6 0.3676 0.1139 5.4291 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.1264 -0.7994 -1.2055 29 1 1.6054 -1.7198 -1.2951 30 1 2.9222 -1.8427 -4.7318 31 1 3.1263 -0.7994 1.2057 32 1 1.6054 -1.7198 1.2952 33 1 0.6527 0.1793 2.4753 34 1 3.2125 -0.7037 3.6402 35 1 1.6919 -1.6245 3.7301 36 1 3.5605 1.1594 5.2131 37 1 -1.1132 1.6614 8.0658 38 1 -3.0109 0.3161 7.2916 39 1 -2.7683 -1.1597 5.3358 40 1 -0.6481 -1.3048 4.1527 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602515725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:52 Heat of formation + Delta-G solvation = 23.632399 kcal Electronic energy + Delta-G solvation = -19627.782048 eV Core-core repulsion = 16725.715214 eV Total energy + Delta-G solvation = -2902.066833 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.86217 -37.26999 -35.70984 -33.47050 -31.85706 -31.13991 -29.63727 -27.22242 -26.43359 -24.50696 -23.22748 -22.74271 -22.06917 -19.81735 -18.88898 -18.24955 -16.47880 -15.87276 -15.82824 -15.51090 -15.05025 -14.77095 -14.34998 -14.04842 -13.87191 -13.62894 -13.18795 -13.01947 -12.50130 -12.33309 -12.13098 -11.92827 -11.62121 -11.37818 -11.35597 -11.14996 -10.87172 -10.82134 -10.72102 -10.33588 -10.20908 -9.83519 -9.70387 -9.15126 -8.97207 -8.71046 -8.31864 -8.19467 -7.83119 -5.96746 -3.97874 0.55917 1.02462 1.37595 1.82484 2.08565 3.35340 3.39595 3.42294 3.49669 4.38747 4.45242 4.50453 4.66495 4.72094 4.97365 5.03585 5.14106 5.28755 5.39029 5.42186 5.50479 5.63559 5.75155 5.77063 5.79522 5.99184 6.05759 6.13505 6.22517 6.24917 6.34450 6.46225 6.55803 6.62851 6.93237 7.11012 7.17414 7.33318 7.61795 7.70515 7.86606 8.03436 8.47400 9.08253 9.65456 11.14755 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.026699 B = 0.002897 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.468027 B = 9663.933349 C =10126.439628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.066 0.934 4 C 0.029 3.971 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.684 5.684 15 C 0.114 3.886 16 C -0.078 4.078 17 C -0.174 4.174 18 S 0.073 5.927 19 C -0.138 4.138 20 C -0.085 4.085 21 C -0.106 4.106 22 C -0.118 4.118 23 C -0.078 4.078 24 C -0.065 4.065 25 H 0.063 0.937 26 H 0.041 0.959 27 H 0.031 0.969 28 H 0.015 0.985 29 H 0.014 0.986 30 H 0.260 0.740 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.340 0.660 34 H 0.082 0.918 35 H 0.038 0.962 36 H 0.169 0.831 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.948 2.545 24.054 24.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.316 5.316 15 C -0.018 4.018 16 C -0.090 4.090 17 C -0.308 4.308 18 S 0.338 5.662 19 C -0.254 4.254 20 C -0.108 4.108 21 C -0.127 4.127 22 C -0.138 4.138 23 C -0.097 4.097 24 C -0.073 4.073 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.033 0.967 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.159 0.841 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.187 0.813 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.744 3.918 24.946 25.694 hybrid contribution -1.228 -1.256 -1.924 2.606 sum -5.972 2.662 23.022 23.933 Atomic orbital electron populations 1.21742 0.96700 1.00406 1.00300 1.21226 0.94871 1.00144 0.94075 0.91605 1.19100 0.96122 0.95336 0.90307 1.21207 1.34706 1.08288 0.91002 0.92615 1.25017 0.95331 0.95083 0.99083 1.69956 1.39072 1.21201 1.23481 0.86690 0.78865 0.80166 0.82474 1.20261 1.21379 1.20299 1.22179 1.00479 0.94433 0.89372 1.60624 1.19927 1.50302 1.00779 1.20608 1.00793 0.93698 0.86662 1.19681 0.91516 0.99760 0.98065 1.24876 1.04233 1.01768 0.99949 1.84048 1.01729 1.48050 1.32370 1.22679 0.98799 1.02987 1.00887 1.20462 0.90576 1.00106 0.99621 1.21041 0.98282 0.96391 0.96945 1.20717 0.97562 0.99488 0.96064 1.20743 0.91565 0.97983 0.99444 1.19197 0.94047 0.98577 0.95526 0.91826 0.94020 0.95017 0.96659 0.96757 0.93044 0.91312 0.95721 0.84139 0.89934 0.94353 0.81337 0.85686 0.85320 0.85419 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.77 37.16 0.33 -2.19 16 2 C -0.08 -1.72 2.54 -90.62 -0.23 -1.96 16 3 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.03 0.74 4.45 -27.89 -0.12 0.61 16 5 C -0.51 -14.42 8.41 -34.44 -0.29 -14.71 16 6 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.06 1.09 5.14 -3.82 -0.02 1.08 16 14 N -0.68 -10.20 6.49 -115.06 -0.75 -10.95 16 15 C 0.11 1.44 5.82 -4.98 -0.03 1.41 16 16 C -0.08 -0.96 5.48 -103.67 -0.57 -1.53 16 17 C -0.17 -1.95 10.72 28.84 0.31 -1.64 16 18 S 0.07 0.76 23.23 -107.50 -2.50 -1.73 16 19 C -0.14 -1.59 6.48 -38.42 -0.25 -1.83 16 20 C -0.09 -0.82 10.07 -39.26 -0.40 -1.21 16 21 C -0.11 -0.91 10.03 -39.64 -0.40 -1.30 16 22 C -0.12 -1.09 9.95 -40.13 -0.40 -1.49 16 23 C -0.08 -0.84 9.82 -39.24 -0.39 -1.23 16 24 C -0.07 -0.79 6.01 -105.37 -0.63 -1.43 16 25 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.34 4.98 6.98 -39.29 -0.27 4.70 16 34 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.12 1.26 8.05 -52.49 -0.42 0.84 16 LS Contribution 344.34 15.07 5.19 5.19 Total: -1.00 -30.53 344.34 -11.50 -42.03 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.98 Total: 0.93 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -3.18 Total: -25.92 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.01 Total: -37.25 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.50 Total: -1.73 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.53 -11.50 -42.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602515725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.662 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds