Wall clock time and date at job start Tue Mar 31 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47195 * 2 1 4 4 C 1.52995 * 109.47500 * 240.00091 * 2 1 3 5 5 C 1.50695 * 109.47282 * 64.99896 * 4 2 1 6 6 H 1.08005 * 120.00198 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00134 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99834 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99892 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47332 * 59.99660 * 9 7 5 11 11 H 1.48499 * 109.46904 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47163 * 299.99754 * 9 7 5 13 13 C 1.53001 * 109.46858 * 119.99870 * 2 1 3 14 14 N 1.46905 * 109.47410 * 294.99921 * 13 2 1 15 15 C 1.46896 * 111.00013 * 180.02562 * 14 13 2 16 16 C 1.50701 * 109.47031 * 180.02562 * 15 14 13 17 17 C 1.31821 * 122.55382 * 260.02049 * 16 15 14 18 18 S 1.75301 * 111.40285 * 179.97438 * 17 16 15 19 19 C 1.75900 * 92.19267 * 0.02562 * 18 17 16 20 20 C 1.39853 * 130.55891 * 179.97438 * 19 18 17 21 21 C 1.37473 * 120.17902 * 179.97438 * 20 19 18 22 22 C 1.38846 * 120.18441 * 0.04613 * 21 20 19 23 23 C 1.36095 * 120.59536 * 359.97438 * 22 21 20 24 24 C 1.39741 * 109.68395 * 359.97438 * 19 18 17 25 25 H 1.08999 * 109.47129 * 60.00021 * 1 2 3 26 26 H 1.09004 * 109.47195 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47621 * 299.99903 * 1 2 3 28 28 H 1.09004 * 109.47366 * 184.99907 * 4 2 1 29 29 H 1.09007 * 109.46867 * 304.99909 * 4 2 1 30 30 H 0.97009 * 119.99808 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47020 * 175.00643 * 13 2 1 32 32 H 1.08998 * 109.47249 * 55.00580 * 13 2 1 33 33 H 1.00900 * 110.99518 * 56.04730 * 14 13 2 34 34 H 1.08991 * 109.47641 * 60.00064 * 15 14 13 35 35 H 1.09004 * 109.47060 * 299.99867 * 15 14 13 36 36 H 1.07997 * 124.29825 * 359.96196 * 17 16 15 37 37 H 1.08004 * 119.91452 * 0.02562 * 20 19 18 38 38 H 1.07992 * 119.90874 * 180.02562 * 21 20 19 39 39 H 1.07997 * 119.70593 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.77544 * 179.69957 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0800 0.9742 -2.3757 7 6 1.9925 -0.4022 -3.7283 8 7 2.6749 -1.5197 -3.8511 9 14 1.4990 0.5629 -5.2496 10 1 2.0920 1.9229 -5.1870 11 1 1.9940 -0.1372 -6.4620 12 1 0.0190 0.6705 -5.3090 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.1256 -0.6265 3.6672 16 6 1.7086 0.1787 4.8709 17 6 2.5317 0.9954 5.4978 18 16 1.7445 1.7813 6.8527 19 6 0.2262 0.9500 6.5398 20 6 -1.0010 1.0158 7.2074 21 6 -2.0652 0.2616 6.7731 22 6 -1.9274 -0.5703 5.6701 23 6 -0.7420 -0.6497 5.0062 24 6 0.3676 0.1139 5.4291 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.1264 -0.7994 -1.2055 29 1 1.6054 -1.7198 -1.2951 30 1 2.9222 -1.8427 -4.7318 31 1 3.1263 -0.7994 1.2057 32 1 1.6054 -1.7198 1.2952 33 1 0.6527 0.1793 2.4753 34 1 3.2125 -0.7037 3.6402 35 1 1.6919 -1.6245 3.7301 36 1 3.5605 1.1594 5.2131 37 1 -1.1132 1.6614 8.0658 38 1 -3.0109 0.3161 7.2916 39 1 -2.7683 -1.1597 5.3358 40 1 -0.6481 -1.3048 4.1527 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602515725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:52 Heat of formation + Delta-G solvation = 7.444024 kcal Electronic energy + Delta-G solvation = -19628.484028 eV Core-core repulsion = 16725.715214 eV Total energy + Delta-G solvation = -2902.768814 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.63928 -38.55011 -36.87743 -35.11348 -33.58720 -31.91819 -30.47975 -29.01554 -27.79403 -26.04557 -24.14339 -23.82345 -23.37971 -20.93413 -20.29719 -19.03306 -18.52307 -17.06586 -16.68200 -16.56339 -16.27366 -15.94197 -15.78199 -15.25129 -14.95235 -14.57854 -14.42926 -14.25910 -13.99382 -13.68916 -13.36753 -13.24489 -12.99225 -12.76532 -12.65935 -12.45371 -12.23729 -12.19213 -11.99782 -11.90698 -11.60461 -11.49358 -11.07500 -10.95555 -10.58628 -10.52219 -9.48435 -9.38781 -8.63710 -8.16842 -6.25876 -0.22483 0.28281 0.58754 0.99831 1.25287 1.40597 1.43259 1.50924 2.42670 2.74474 3.16562 3.39055 3.61306 3.78396 4.03368 4.09384 4.19576 4.26219 4.34342 4.40550 4.44722 4.49186 4.60659 4.69529 4.77466 4.85137 4.86346 5.02416 5.04500 5.20089 5.23764 5.36290 5.37660 5.47638 5.47937 5.55382 5.57333 5.79922 5.89801 5.94001 6.03935 6.31802 6.42843 6.89839 7.42273 8.94974 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.026699 B = 0.002897 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.468027 B = 9663.933349 C =10126.439628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.054 0.946 4 C 0.034 3.966 5 C -0.531 4.531 6 H 0.060 0.940 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.077 3.923 14 N -0.685 5.685 15 C 0.118 3.882 16 C -0.093 4.093 17 C -0.181 4.181 18 S 0.088 5.912 19 C -0.160 4.160 20 C -0.094 4.094 21 C -0.102 4.102 22 C -0.118 4.118 23 C -0.096 4.096 24 C -0.087 4.087 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.061 0.939 28 H -0.013 1.013 29 H -0.009 1.009 30 H 0.262 0.738 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.342 0.658 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.181 0.819 37 H 0.145 0.855 38 H 0.160 0.840 39 H 0.151 0.849 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.574 3.488 25.178 26.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.095 4.095 3 H 0.073 0.927 4 C -0.003 4.003 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.052 4.052 14 N -0.317 5.317 15 C -0.013 4.013 16 C -0.105 4.105 17 C -0.315 4.315 18 S 0.353 5.647 19 C -0.275 4.275 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.138 4.138 23 C -0.115 4.115 24 C -0.095 4.095 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.006 0.994 29 H 0.010 0.990 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.162 0.838 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.198 0.802 37 H 0.163 0.837 38 H 0.178 0.822 39 H 0.168 0.832 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.378 4.872 26.092 27.299 hybrid contribution -0.746 -1.563 -2.187 2.789 sum -7.124 3.310 23.905 25.163 Atomic orbital electron populations 1.21639 0.95069 1.00740 1.00876 1.21019 0.96167 0.98971 0.93331 0.92715 1.18983 0.94255 0.94581 0.92490 1.21621 1.34539 1.08586 0.92141 0.92199 1.25936 0.95259 0.96082 1.02595 1.70092 1.40268 1.22886 1.24339 0.85578 0.78967 0.78762 0.78222 1.19389 1.20990 1.19156 1.21875 0.99920 0.94291 0.89098 1.60545 1.20163 1.50207 1.00766 1.20583 1.00960 0.93928 0.85842 1.19676 0.92150 1.00441 0.98216 1.25124 1.04837 1.01426 1.00147 1.83908 1.01372 1.47631 1.31747 1.22970 0.99794 1.03408 1.01288 1.20821 0.90157 1.00519 1.00094 1.21446 0.99197 0.95152 0.96463 1.21069 0.97579 0.99348 0.95834 1.20904 0.92089 0.98432 1.00111 1.19366 0.94329 0.99568 0.96259 0.93608 0.93798 0.91989 0.99428 0.99028 0.92927 0.91986 0.95433 0.83838 0.89565 0.93820 0.80217 0.83738 0.82243 0.83179 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 8.77 71.98 0.63 -3.99 16 2 C -0.08 -3.13 2.54 -10.80 -0.03 -3.16 16 3 H 0.05 2.37 8.14 -2.38 -0.02 2.35 16 4 C 0.03 1.82 4.45 29.84 0.13 1.95 16 5 C -0.53 -30.22 8.41 25.60 0.22 -30.01 16 6 H 0.06 3.29 7.06 -2.91 -0.02 3.26 16 7 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 8 N -0.94 -57.39 13.29 21.45 0.28 -57.10 16 9 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 C 0.08 2.64 5.14 86.30 0.44 3.09 16 14 N -0.68 -19.88 6.49 -517.93 -3.36 -23.24 16 15 C 0.12 2.90 5.82 85.56 0.50 3.39 16 16 C -0.09 -2.21 5.48 -18.80 -0.10 -2.31 16 17 C -0.18 -3.93 10.72 67.04 0.72 -3.21 16 18 S 0.09 1.75 23.23 -56.49 -1.31 0.44 16 19 C -0.16 -3.45 6.48 23.02 0.15 -3.30 16 20 C -0.09 -1.59 10.07 22.48 0.23 -1.36 16 21 C -0.10 -1.46 10.03 22.23 0.22 -1.23 16 22 C -0.12 -1.91 9.95 21.92 0.22 -1.69 16 23 C -0.10 -1.96 9.82 22.49 0.22 -1.74 16 24 C -0.09 -2.04 6.01 -20.35 -0.12 -2.16 16 25 H 0.04 1.83 6.95 -2.39 -0.02 1.81 16 26 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.06 1.89 6.68 -2.39 -0.02 1.87 16 28 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 29 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 30 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.34 9.61 6.98 -89.69 -0.63 8.98 16 34 H 0.09 2.03 8.07 -2.39 -0.02 2.01 16 35 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.18 3.30 8.06 -2.91 -0.02 3.27 16 37 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 38 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.12 2.43 8.05 -2.91 -0.02 2.40 16 Total: -1.00 -65.95 344.34 1.92 -64.02 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.40 Total: 14.50 kcal Atomic # 6 Polarization: -49.24 SS G_CDS: 3.89 Total: -45.35 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -3.08 Total: -80.34 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.31 Total: 0.44 kcal Total: -65.95 1.92 -64.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602515725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.468 kcal (2) G-P(sol) polarization free energy of solvation -65.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds