Wall clock time and date at job start Tue Mar 31 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47333 * 2 1 4 4 C 1.53002 * 109.47182 * 119.99788 * 2 1 3 5 5 C 1.50701 * 109.47273 * 295.00542 * 4 2 1 6 6 H 1.08001 * 119.99788 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00060 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00025 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00026 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46784 * 90.00252 * 9 7 5 11 11 H 1.48498 * 109.47466 * 209.99961 * 9 7 5 12 12 H 1.48496 * 109.47256 * 330.00533 * 9 7 5 13 13 C 1.52998 * 109.47328 * 240.00185 * 2 1 3 14 14 N 1.46895 * 109.47374 * 64.99900 * 13 2 1 15 15 C 1.46901 * 111.00179 * 180.02562 * 14 13 2 16 16 C 1.50696 * 109.47108 * 179.97438 * 15 14 13 17 17 C 1.31821 * 122.55678 * 259.97312 * 16 15 14 18 18 S 1.75303 * 111.40307 * 179.97438 * 17 16 15 19 19 C 1.75899 * 92.19266 * 0.02562 * 18 17 16 20 20 C 1.39853 * 130.55931 * 180.02562 * 19 18 17 21 21 C 1.37468 * 120.17563 * 179.97438 * 20 19 18 22 22 C 1.38841 * 120.19160 * 0.02562 * 21 20 19 23 23 C 1.36095 * 120.59178 * 359.97438 * 22 21 20 24 24 C 1.39741 * 109.68374 * 0.02562 * 19 18 17 25 25 H 1.08999 * 109.47333 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47243 * 299.99879 * 1 2 3 27 27 H 1.09005 * 109.47132 * 60.00265 * 1 2 3 28 28 H 1.09005 * 109.47044 * 54.99882 * 4 2 1 29 29 H 1.09000 * 109.47416 * 175.00134 * 4 2 1 30 30 H 0.97006 * 120.00180 * 179.97438 * 8 7 5 31 31 H 1.09007 * 109.47055 * 304.99678 * 13 2 1 32 32 H 1.09006 * 109.47031 * 185.00269 * 13 2 1 33 33 H 1.00901 * 110.99784 * 56.04535 * 14 13 2 34 34 H 1.09002 * 109.46787 * 59.99815 * 15 14 13 35 35 H 1.09002 * 109.47253 * 300.00066 * 15 14 13 36 36 H 1.07997 * 124.29755 * 359.97438 * 17 16 15 37 37 H 1.08003 * 119.91431 * 359.96949 * 20 19 18 38 38 H 1.08002 * 119.90514 * 179.97438 * 21 20 19 39 39 H 1.07997 * 119.70951 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.77544 * 179.69954 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0804 0.9745 2.3757 7 6 1.9922 -0.4022 3.7284 8 7 2.6755 -1.5192 3.8512 9 14 1.4985 0.5628 5.2497 10 1 0.1708 0.0953 5.7231 11 1 2.5075 0.3521 6.3187 12 1 1.4245 2.0081 4.9167 13 6 2.0400 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1248 -0.6271 -3.6672 16 6 1.7078 0.1780 -4.8708 17 6 0.6617 -0.1381 -5.6080 18 16 0.4447 0.9934 -6.9293 19 6 1.8498 1.9338 -6.4440 20 6 2.4118 3.0848 -7.0055 21 6 3.5299 3.6529 -6.4427 22 6 4.1078 3.0871 -5.3142 23 6 3.5771 1.9672 -4.7518 24 6 2.4293 1.3622 -5.3082 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6053 -1.7198 1.2952 29 1 3.1263 -0.7994 1.2057 30 1 2.9228 -1.8422 4.7319 31 1 1.6054 -1.7198 -1.2952 32 1 3.1263 -0.7994 -1.2055 33 1 1.9882 0.9873 -2.3966 34 1 1.6904 -1.6249 -3.7296 35 1 3.2117 -0.7050 -3.6405 36 1 0.0198 -0.9864 -5.4216 37 1 1.9662 3.5284 -7.8836 38 1 3.9606 4.5415 -6.8802 39 1 4.9864 3.5397 -4.8787 40 1 4.0402 1.5354 -3.8769 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602515729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:56 Heat of formation + Delta-G solvation = 23.307247 kcal Electronic energy + Delta-G solvation = -19589.350792 eV Core-core repulsion = 16687.269859 eV Total energy + Delta-G solvation = -2902.080933 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.85564 -37.21360 -35.67805 -33.48953 -31.86301 -31.13503 -29.64198 -27.20411 -26.35117 -24.36353 -23.21572 -22.73308 -22.12768 -19.88729 -18.92399 -18.25674 -16.34027 -15.85640 -15.80564 -15.47718 -15.04536 -14.69838 -14.34139 -14.11855 -13.94112 -13.60608 -13.24686 -12.93964 -12.49947 -12.29280 -12.07680 -11.81882 -11.52503 -11.41780 -11.27837 -11.15120 -10.84640 -10.80651 -10.74616 -10.27640 -10.23689 -9.82439 -9.69131 -9.14311 -8.95364 -8.70644 -8.32139 -8.17071 -7.82874 -5.96968 -3.97974 0.56298 1.03140 1.37707 1.82586 2.08807 3.33717 3.39947 3.43375 3.50331 4.38975 4.45222 4.50629 4.66485 4.72626 4.97680 5.04133 5.14443 5.29025 5.38868 5.42446 5.50511 5.63425 5.72551 5.76542 5.86030 6.00308 6.13883 6.15959 6.23200 6.34897 6.41167 6.55057 6.63516 6.69875 7.01251 7.19132 7.20116 7.33490 7.61256 7.70416 7.86000 8.03321 8.47507 9.08428 9.65423 11.14579 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.024958 B = 0.002927 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.625952 B = 9565.222472 C =10075.075402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.063 3.937 14 N -0.681 5.681 15 C 0.114 3.886 16 C -0.077 4.077 17 C -0.174 4.174 18 S 0.072 5.928 19 C -0.138 4.138 20 C -0.086 4.086 21 C -0.106 4.106 22 C -0.118 4.118 23 C -0.077 4.077 24 C -0.065 4.065 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.016 0.984 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.339 0.661 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.169 0.831 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.322 6.371 -23.788 24.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.312 5.312 15 C -0.017 4.017 16 C -0.089 4.089 17 C -0.309 4.309 18 S 0.337 5.663 19 C -0.253 4.253 20 C -0.108 4.108 21 C -0.126 4.126 22 C -0.138 4.138 23 C -0.097 4.097 24 C -0.073 4.073 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.156 0.844 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.186 0.814 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.350 6.005 -24.851 25.602 hybrid contribution 1.686 0.473 2.106 2.739 sum 0.336 6.478 -22.745 23.652 Atomic orbital electron populations 1.21585 0.95698 1.00553 1.00164 1.21199 0.96049 0.98911 0.93958 0.92854 1.19121 0.95887 0.95574 0.90409 1.21242 1.34552 1.08282 0.90987 0.92568 1.25020 0.95332 0.95112 0.99096 1.69967 1.39109 1.21294 1.23355 0.86631 0.78225 0.80450 0.82928 1.20709 1.21325 1.19900 1.22192 0.97245 0.97777 0.89293 1.60580 1.63937 1.05831 1.00868 1.20604 0.97555 0.96727 0.86835 1.19674 0.95630 0.95622 0.97995 1.24865 1.01949 1.04618 0.99442 1.84048 1.28288 1.22342 1.31617 1.22675 1.00857 1.01167 1.00636 1.20459 0.96436 0.93923 0.99985 1.21042 0.95561 0.99818 0.96221 1.20722 1.00469 0.96199 0.96445 1.20750 0.94108 0.95488 0.99347 1.19196 0.97049 0.95641 0.95461 0.94167 0.92789 0.93944 0.96550 0.96932 0.93111 0.91399 0.95657 0.84378 0.90000 0.94325 0.81387 0.85701 0.85327 0.85405 0.85696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.15 0.33 -2.08 16 2 C -0.08 -1.68 2.48 -90.62 -0.22 -1.90 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.40 8.41 -34.44 -0.29 -14.69 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.06 1.08 5.07 -3.83 -0.02 1.06 16 14 N -0.68 -9.93 5.94 -115.06 -0.68 -10.61 16 15 C 0.11 1.42 5.82 -4.98 -0.03 1.39 16 16 C -0.08 -0.93 5.48 -103.67 -0.57 -1.50 16 17 C -0.17 -1.93 10.72 28.84 0.31 -1.62 16 18 S 0.07 0.75 23.23 -107.50 -2.50 -1.75 16 19 C -0.14 -1.58 6.48 -38.42 -0.25 -1.83 16 20 C -0.09 -0.82 10.07 -39.26 -0.40 -1.22 16 21 C -0.11 -0.91 10.03 -39.64 -0.40 -1.31 16 22 C -0.12 -1.10 9.95 -40.13 -0.40 -1.50 16 23 C -0.08 -0.84 9.82 -39.24 -0.39 -1.23 16 24 C -0.07 -0.79 6.01 -105.37 -0.63 -1.42 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 27 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.34 4.89 8.72 -39.29 -0.34 4.54 16 34 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.13 1.27 8.05 -52.49 -0.42 0.85 16 LS Contribution 346.61 15.07 5.22 5.22 Total: -1.00 -30.54 346.61 -11.52 -42.06 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.10 Total: 0.42 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -3.17 Total: -25.79 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.05 Total: -36.93 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.50 Total: -1.75 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.54 -11.52 -42.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602515729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.369 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds