Wall clock time and date at job start Tue Mar 31 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47333 * 2 1 4 4 C 1.53002 * 109.47182 * 119.99788 * 2 1 3 5 5 C 1.50701 * 109.47273 * 295.00542 * 4 2 1 6 6 H 1.08001 * 119.99788 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00060 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00025 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00026 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46784 * 90.00252 * 9 7 5 11 11 H 1.48498 * 109.47466 * 209.99961 * 9 7 5 12 12 H 1.48496 * 109.47256 * 330.00533 * 9 7 5 13 13 C 1.52998 * 109.47328 * 240.00185 * 2 1 3 14 14 N 1.46895 * 109.47374 * 64.99900 * 13 2 1 15 15 C 1.46901 * 111.00179 * 180.02562 * 14 13 2 16 16 C 1.50696 * 109.47108 * 179.97438 * 15 14 13 17 17 C 1.31821 * 122.55678 * 259.97312 * 16 15 14 18 18 S 1.75303 * 111.40307 * 179.97438 * 17 16 15 19 19 C 1.75899 * 92.19266 * 0.02562 * 18 17 16 20 20 C 1.39853 * 130.55931 * 180.02562 * 19 18 17 21 21 C 1.37468 * 120.17563 * 179.97438 * 20 19 18 22 22 C 1.38841 * 120.19160 * 0.02562 * 21 20 19 23 23 C 1.36095 * 120.59178 * 359.97438 * 22 21 20 24 24 C 1.39741 * 109.68374 * 0.02562 * 19 18 17 25 25 H 1.08999 * 109.47333 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47243 * 299.99879 * 1 2 3 27 27 H 1.09005 * 109.47132 * 60.00265 * 1 2 3 28 28 H 1.09005 * 109.47044 * 54.99882 * 4 2 1 29 29 H 1.09000 * 109.47416 * 175.00134 * 4 2 1 30 30 H 0.97006 * 120.00180 * 179.97438 * 8 7 5 31 31 H 1.09007 * 109.47055 * 304.99678 * 13 2 1 32 32 H 1.09006 * 109.47031 * 185.00269 * 13 2 1 33 33 H 1.00901 * 110.99784 * 56.04535 * 14 13 2 34 34 H 1.09002 * 109.46787 * 59.99815 * 15 14 13 35 35 H 1.09002 * 109.47253 * 300.00066 * 15 14 13 36 36 H 1.07997 * 124.29755 * 359.97438 * 17 16 15 37 37 H 1.08003 * 119.91431 * 359.96949 * 20 19 18 38 38 H 1.08002 * 119.90514 * 179.97438 * 21 20 19 39 39 H 1.07997 * 119.70951 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.77544 * 179.69954 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0804 0.9745 2.3757 7 6 1.9922 -0.4022 3.7284 8 7 2.6755 -1.5192 3.8512 9 14 1.4985 0.5628 5.2497 10 1 0.1708 0.0953 5.7231 11 1 2.5075 0.3521 6.3187 12 1 1.4245 2.0081 4.9167 13 6 2.0400 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1248 -0.6271 -3.6672 16 6 1.7078 0.1780 -4.8708 17 6 0.6617 -0.1381 -5.6080 18 16 0.4447 0.9934 -6.9293 19 6 1.8498 1.9338 -6.4440 20 6 2.4118 3.0848 -7.0055 21 6 3.5299 3.6529 -6.4427 22 6 4.1078 3.0871 -5.3142 23 6 3.5771 1.9672 -4.7518 24 6 2.4293 1.3622 -5.3082 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6053 -1.7198 1.2952 29 1 3.1263 -0.7994 1.2057 30 1 2.9228 -1.8422 4.7319 31 1 1.6054 -1.7198 -1.2952 32 1 3.1263 -0.7994 -1.2055 33 1 1.9882 0.9873 -2.3966 34 1 1.6904 -1.6249 -3.7296 35 1 3.2117 -0.7050 -3.6405 36 1 0.0198 -0.9864 -5.4216 37 1 1.9662 3.5284 -7.8836 38 1 3.9606 4.5415 -6.8802 39 1 4.9864 3.5397 -4.8787 40 1 4.0402 1.5354 -3.8769 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602515729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:55 Heat of formation + Delta-G solvation = 7.340142 kcal Electronic energy + Delta-G solvation = -19590.043178 eV Core-core repulsion = 16687.269859 eV Total energy + Delta-G solvation = -2902.773319 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.63345 -38.47745 -36.87294 -35.10849 -33.61508 -31.91968 -30.48047 -29.00034 -27.74112 -25.92212 -24.14338 -23.83300 -23.38710 -21.08747 -20.25047 -19.03576 -18.48168 -16.85261 -16.66763 -16.57830 -16.24408 -16.03701 -15.64111 -15.46658 -14.92404 -14.60618 -14.38321 -14.31965 -13.90073 -13.66973 -13.32056 -13.08164 -12.98997 -12.75141 -12.65108 -12.51144 -12.21773 -12.15299 -12.02142 -11.91493 -11.59685 -11.48149 -11.09557 -10.93232 -10.57946 -10.52887 -9.48219 -9.36260 -8.63141 -8.17111 -6.26041 -0.22148 0.28043 0.59196 1.00418 1.25901 1.40574 1.41379 1.52372 2.42466 2.74315 3.16370 3.39445 3.61860 3.78685 4.02327 4.08091 4.22454 4.25333 4.37396 4.40562 4.49844 4.53518 4.60094 4.70071 4.85107 4.89437 4.93648 5.02153 5.04085 5.20390 5.28861 5.36343 5.45975 5.47817 5.50924 5.55622 5.57976 5.81386 5.89499 5.93630 6.02613 6.31869 6.41566 6.89909 7.42188 8.94897 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.024958 B = 0.002927 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.625952 B = 9565.222472 C =10075.075402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 H 0.051 0.949 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.077 3.923 14 N -0.679 5.679 15 C 0.119 3.881 16 C -0.092 4.092 17 C -0.179 4.179 18 S 0.089 5.911 19 C -0.160 4.160 20 C -0.094 4.094 21 C -0.103 4.103 22 C -0.120 4.120 23 C -0.096 4.096 24 C -0.087 4.087 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.063 0.937 28 H -0.009 1.009 29 H -0.013 1.013 30 H 0.262 0.738 31 H 0.066 0.934 32 H 0.022 0.978 33 H 0.340 0.660 34 H 0.087 0.913 35 H 0.041 0.959 36 H 0.182 0.818 37 H 0.145 0.855 38 H 0.160 0.840 39 H 0.149 0.851 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.053 8.030 -24.837 26.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 H 0.070 0.930 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.188 1.188 13 C -0.052 4.052 14 N -0.310 5.310 15 C -0.012 4.012 16 C -0.104 4.104 17 C -0.314 4.314 18 S 0.354 5.646 19 C -0.275 4.275 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.139 4.139 23 C -0.116 4.116 24 C -0.095 4.095 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.009 0.991 29 H 0.006 0.994 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.158 0.842 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.199 0.801 37 H 0.163 0.837 38 H 0.177 0.823 39 H 0.167 0.833 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.732 7.673 -25.922 27.089 hybrid contribution 1.837 -0.020 2.353 2.986 sum 0.105 7.653 -23.568 24.780 Atomic orbital electron populations 1.21476 0.94793 1.00405 1.00326 1.21010 0.96650 0.98368 0.93264 0.93009 1.19004 0.94155 0.94689 0.92578 1.21644 1.34379 1.08564 0.92130 0.92211 1.25937 0.95262 0.96112 1.02602 1.70099 1.40289 1.22961 1.24262 0.85522 0.77998 0.79310 0.78688 1.19938 1.20889 1.18783 1.21883 0.96827 0.97439 0.89016 1.60512 1.64010 1.05772 1.00664 1.20577 0.97758 0.96879 0.86012 1.19658 0.96396 0.96157 0.98181 1.25120 1.01720 1.05063 0.99471 1.83910 1.27899 1.21800 1.31031 1.22970 1.01454 1.02102 1.00945 1.20819 0.96738 0.93424 1.00604 1.21438 0.94906 1.00366 0.95599 1.21062 1.00879 0.95525 0.96477 1.20901 0.94364 0.96446 0.99861 1.19372 0.97816 0.96073 0.96221 0.94458 0.94439 0.91794 0.99071 0.99428 0.92940 0.91530 0.95991 0.84202 0.89425 0.94056 0.80095 0.83715 0.82288 0.83321 0.85822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.37 8.89 71.98 0.64 -3.73 16 2 C -0.07 -3.04 2.48 -10.80 -0.03 -3.06 16 3 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 4 C 0.03 1.76 4.45 29.85 0.13 1.89 16 5 C -0.53 -30.09 8.41 25.60 0.22 -29.88 16 6 H 0.06 3.29 7.06 -2.91 -0.02 3.26 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 8 N -0.94 -57.35 13.29 21.45 0.28 -57.07 16 9 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 13 C 0.08 2.62 5.07 86.30 0.44 3.06 16 14 N -0.68 -19.24 5.94 -517.93 -3.08 -22.32 16 15 C 0.12 2.86 5.82 85.56 0.50 3.36 16 16 C -0.09 -2.15 5.48 -18.80 -0.10 -2.25 16 17 C -0.18 -3.79 10.72 67.04 0.72 -3.07 16 18 S 0.09 1.73 23.23 -56.49 -1.31 0.42 16 19 C -0.16 -3.45 6.48 23.02 0.15 -3.31 16 20 C -0.09 -1.61 10.07 22.48 0.23 -1.38 16 21 C -0.10 -1.51 10.03 22.23 0.22 -1.29 16 22 C -0.12 -2.00 9.95 21.92 0.22 -1.78 16 23 C -0.10 -2.02 9.82 22.49 0.22 -1.80 16 24 C -0.09 -2.03 6.01 -20.35 -0.12 -2.16 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.04 1.55 6.95 -2.39 -0.02 1.53 16 27 H 0.06 2.19 7.75 -2.38 -0.02 2.17 16 28 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 29 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 30 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 31 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.02 0.75 8.14 -2.38 -0.02 0.74 16 33 H 0.34 9.57 8.72 -89.69 -0.78 8.79 16 34 H 0.09 1.99 8.06 -2.39 -0.02 1.97 16 35 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.18 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 39 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.12 2.50 8.05 -2.91 -0.02 2.48 16 Total: -1.00 -65.54 346.61 2.05 -63.49 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.24 Total: 13.80 kcal Atomic # 6 Polarization: -48.94 SS G_CDS: 3.89 Total: -45.05 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -2.79 Total: -79.39 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -1.31 Total: 0.42 kcal Total: -65.54 2.05 -63.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602515729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.829 kcal (2) G-P(sol) polarization free energy of solvation -65.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds