Wall clock time and date at job start Tue Mar 31 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47239 * 2 1 4 4 C 1.53002 * 109.47327 * 239.99813 * 2 1 3 5 5 C 1.50696 * 109.46919 * 64.99798 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 299.99939 * 9 7 5 13 13 C 1.52999 * 109.47107 * 119.99444 * 2 1 3 14 14 N 1.46903 * 109.47368 * 295.00343 * 13 2 1 15 15 C 1.46898 * 111.00043 * 179.97438 * 14 13 2 16 16 C 1.50697 * 109.47119 * 179.97438 * 15 14 13 17 17 C 1.31830 * 124.29599 * 89.72452 * 16 15 14 18 18 C 1.45396 * 114.89114 * 179.84303 * 17 16 15 19 19 C 1.41163 * 129.34004 * 180.22147 * 18 17 16 20 20 C 1.36095 * 120.45872 * 180.28195 * 19 18 17 21 21 C 1.38854 * 120.58908 * 359.95676 * 20 19 18 22 22 C 1.37471 * 120.18415 * 0.02562 * 21 20 19 23 23 C 1.39745 * 111.82704 * 0.43218 * 18 17 16 24 24 S 1.75302 * 124.30161 * 270.02254 * 16 15 14 25 25 H 1.08997 * 109.47105 * 60.00166 * 1 2 3 26 26 H 1.08997 * 109.46686 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47004 * 300.00313 * 1 2 3 28 28 H 1.09000 * 109.46497 * 305.00064 * 4 2 1 29 29 H 1.08999 * 109.46623 * 185.00128 * 4 2 1 30 30 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 31 31 H 1.09008 * 109.47057 * 55.00147 * 13 2 1 32 32 H 1.09005 * 109.47222 * 174.99830 * 13 2 1 33 33 H 1.00898 * 110.99650 * 303.95303 * 14 13 2 34 34 H 1.09006 * 109.47224 * 299.99867 * 15 14 13 35 35 H 1.09009 * 109.47278 * 59.99601 * 15 14 13 36 36 H 1.08002 * 122.55423 * 0.02562 * 17 16 15 37 37 H 1.07998 * 119.77714 * 0.26061 * 19 18 17 38 38 H 1.07992 * 119.70972 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.90905 * 180.02562 * 21 20 19 40 40 H 1.08003 * 119.90679 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0800 0.9740 -2.3757 7 6 1.9925 -0.4024 -3.7283 8 7 2.6705 -1.5225 -3.8513 9 14 1.4976 0.5619 -5.2497 10 1 2.0897 1.9224 -5.1877 11 1 1.9928 -0.1381 -6.4622 12 1 0.0176 0.6683 -5.3087 13 6 2.0400 -0.7211 1.2493 14 7 1.6514 0.0376 2.4457 15 6 2.1247 -0.6269 3.6673 16 6 1.7087 0.1789 4.8708 17 6 0.5704 0.0172 5.5158 18 6 0.3796 0.9037 6.6523 19 6 -0.7088 0.9900 7.5471 20 6 -0.7009 1.9021 8.5571 21 6 0.3768 2.7615 8.7247 22 6 1.4502 2.6992 7.8681 23 6 1.4630 1.7696 6.8234 24 16 2.6737 1.4555 5.5866 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6054 -1.7198 -1.2950 29 1 3.1264 -0.7995 -1.2054 30 1 2.9272 -2.0234 -3.0613 31 1 1.6054 -1.7197 1.2953 32 1 3.1264 -0.7994 1.2057 33 1 1.9881 0.9874 2.3966 34 1 1.6903 -1.6247 3.7298 35 1 3.2117 -0.7049 3.6406 36 1 -0.1632 -0.7198 5.2240 37 1 -1.5538 0.3278 7.4293 38 1 -1.5401 1.9579 9.2345 39 1 0.3717 3.4809 9.5302 40 1 2.2863 3.3695 8.0028 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602585579.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:33 Heat of formation + Delta-G solvation = 19.186419 kcal Electronic energy + Delta-G solvation = -19188.267128 eV Core-core repulsion = 16286.007502 eV Total energy + Delta-G solvation = -2902.259626 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.73668 -37.40640 -35.73810 -33.91278 -32.06931 -31.27339 -29.80476 -26.64646 -26.18086 -24.29539 -23.63025 -22.40974 -21.96584 -20.48988 -19.32525 -18.05910 -16.70062 -16.24682 -15.88032 -15.37030 -15.03245 -14.69007 -14.30503 -14.00249 -13.82041 -13.66259 -13.46661 -13.28918 -12.80375 -12.37496 -11.89446 -11.77544 -11.63274 -11.47697 -11.35369 -11.25403 -10.98129 -10.79392 -10.67659 -10.25349 -10.08140 -9.90903 -9.82618 -9.46497 -8.72279 -8.46415 -8.29069 -8.26687 -7.93560 -6.31548 -3.99573 0.48782 0.96599 1.30363 1.79516 2.07197 3.45461 3.46100 3.48036 3.66539 4.20174 4.47089 4.53616 4.59566 4.63436 4.89053 5.01579 5.06235 5.16568 5.38355 5.44692 5.49880 5.57396 5.61110 5.69498 5.73477 5.91013 6.02731 6.03495 6.16560 6.27837 6.28460 6.41481 6.56564 6.57909 6.86508 7.04529 7.10455 7.18721 7.40315 7.47802 7.59936 8.27699 8.51350 8.93484 9.71710 11.08849 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.035379 B = 0.002509 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.250575 B =11157.884895 C =11273.219728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 H 0.055 0.945 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.289 1.289 11 H -0.283 1.283 12 H -0.288 1.288 13 C 0.063 3.937 14 N -0.681 5.681 15 C 0.124 3.876 16 C -0.145 4.145 17 C -0.106 4.106 18 C -0.072 4.072 19 C -0.079 4.079 20 C -0.121 4.121 21 C -0.107 4.107 22 C -0.084 4.084 23 C -0.139 4.139 24 S 0.081 5.919 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.043 0.957 28 H 0.007 0.993 29 H 0.003 0.997 30 H 0.268 0.732 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.341 0.659 34 H 0.091 0.909 35 H 0.041 0.959 36 H 0.147 0.853 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 5.731 26.434 27.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.094 4.094 3 H 0.074 0.926 4 C -0.023 4.023 5 C -0.632 4.632 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.552 5.552 9 Si 0.896 3.104 10 H -0.215 1.215 11 H -0.209 1.209 12 H -0.215 1.215 13 C -0.066 4.066 14 N -0.312 5.312 15 C -0.007 4.007 16 C -0.261 4.261 17 C -0.136 4.136 18 C -0.080 4.080 19 C -0.098 4.098 20 C -0.142 4.142 21 C -0.128 4.128 22 C -0.107 4.107 23 C -0.254 4.254 24 S 0.345 5.655 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.026 0.974 29 H 0.021 0.979 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.158 0.842 34 H 0.110 0.890 35 H 0.059 0.941 36 H 0.165 0.835 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.720 6.008 24.373 25.250 hybrid contribution -0.460 -0.380 1.992 2.080 sum -3.179 5.628 26.366 27.147 Atomic orbital electron populations 1.21579 0.95427 1.00564 1.00379 1.21063 0.96221 0.98871 0.93245 0.92640 1.19251 0.95125 0.95639 0.92317 1.22027 1.38611 1.10288 0.92251 0.93205 1.25831 0.94747 0.97146 1.01390 1.70781 1.36330 1.14672 1.33453 0.83568 0.76083 0.75130 0.75648 1.21523 1.20856 1.21459 1.22210 0.97262 0.97804 0.89306 1.60583 1.63939 1.05922 1.00743 1.20474 0.97656 0.96635 0.85928 1.23869 0.98582 1.01816 1.01810 1.20863 0.97475 1.00724 0.94567 1.19335 0.95036 0.96757 0.96896 1.20735 0.96782 0.98514 0.93813 1.20700 0.98838 0.96191 0.98432 1.21034 0.93471 0.99293 0.99038 1.20482 0.99173 0.97398 0.93634 1.22733 0.99106 1.02120 1.01453 1.84198 1.21093 1.35302 1.24881 0.92601 0.94232 0.93772 0.97447 0.97863 0.92212 0.91326 0.95629 0.84172 0.89034 0.94127 0.83544 0.85544 0.85543 0.85355 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.08 -1.55 2.48 -90.62 -0.22 -1.77 16 3 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.01 0.36 3.76 -27.88 -0.10 0.26 16 5 C -0.59 -16.92 8.41 -34.44 -0.29 -17.21 16 6 H 0.05 1.40 7.06 -52.49 -0.37 1.03 16 7 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16 8 N -0.92 -28.37 13.65 55.43 0.76 -27.62 16 9 Si 1.07 25.64 29.90 -169.99 -5.08 20.55 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.06 1.06 5.07 -3.82 -0.02 1.04 16 14 N -0.68 -9.90 5.94 -115.05 -0.68 -10.59 16 15 C 0.12 1.52 6.12 -4.98 -0.03 1.49 16 16 C -0.15 -1.73 5.89 -36.21 -0.21 -1.94 16 17 C -0.11 -1.22 10.21 -38.63 -0.39 -1.61 16 18 C -0.07 -0.81 6.04 -105.38 -0.64 -1.45 16 19 C -0.08 -0.73 10.05 -39.24 -0.39 -1.12 16 20 C -0.12 -0.96 9.95 -40.12 -0.40 -1.35 16 21 C -0.11 -0.84 10.03 -39.63 -0.40 -1.24 16 22 C -0.08 -0.79 10.07 -39.26 -0.40 -1.18 16 23 C -0.14 -1.57 6.48 -38.42 -0.25 -1.82 16 24 S 0.08 0.91 23.20 -107.50 -2.49 -1.58 16 25 H 0.05 1.19 6.95 -51.93 -0.36 0.83 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.79 7.75 -51.93 -0.40 0.38 16 28 H 0.01 0.20 8.00 -51.93 -0.42 -0.22 16 29 H 0.00 0.08 8.01 -51.93 -0.42 -0.33 16 30 H 0.27 8.25 7.22 -40.82 -0.29 7.96 16 31 H 0.07 1.17 8.14 -51.92 -0.42 0.74 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.34 4.92 8.72 -39.29 -0.34 4.58 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.04 0.49 8.14 -51.92 -0.42 0.06 16 36 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -31.37 345.78 -11.86 -43.23 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.05 Total: 0.53 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: -3.52 Total: -29.74 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.07 Total: -38.20 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.55 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.49 Total: -1.58 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.37 -11.86 -43.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602585579.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.415 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds