Wall clock time and date at job start Tue Mar 31 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47239 * 2 1 4 4 C 1.53002 * 109.47327 * 239.99813 * 2 1 3 5 5 C 1.50696 * 109.46919 * 64.99798 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 299.99939 * 9 7 5 13 13 C 1.52999 * 109.47107 * 119.99444 * 2 1 3 14 14 N 1.46903 * 109.47368 * 295.00343 * 13 2 1 15 15 C 1.46898 * 111.00043 * 179.97438 * 14 13 2 16 16 C 1.50697 * 109.47119 * 179.97438 * 15 14 13 17 17 C 1.31830 * 124.29599 * 89.72452 * 16 15 14 18 18 C 1.45396 * 114.89114 * 179.84303 * 17 16 15 19 19 C 1.41163 * 129.34004 * 180.22147 * 18 17 16 20 20 C 1.36095 * 120.45872 * 180.28195 * 19 18 17 21 21 C 1.38854 * 120.58908 * 359.95676 * 20 19 18 22 22 C 1.37471 * 120.18415 * 0.02562 * 21 20 19 23 23 C 1.39745 * 111.82704 * 0.43218 * 18 17 16 24 24 S 1.75302 * 124.30161 * 270.02254 * 16 15 14 25 25 H 1.08997 * 109.47105 * 60.00166 * 1 2 3 26 26 H 1.08997 * 109.46686 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47004 * 300.00313 * 1 2 3 28 28 H 1.09000 * 109.46497 * 305.00064 * 4 2 1 29 29 H 1.08999 * 109.46623 * 185.00128 * 4 2 1 30 30 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 31 31 H 1.09008 * 109.47057 * 55.00147 * 13 2 1 32 32 H 1.09005 * 109.47222 * 174.99830 * 13 2 1 33 33 H 1.00898 * 110.99650 * 303.95303 * 14 13 2 34 34 H 1.09006 * 109.47224 * 299.99867 * 15 14 13 35 35 H 1.09009 * 109.47278 * 59.99601 * 15 14 13 36 36 H 1.08002 * 122.55423 * 0.02562 * 17 16 15 37 37 H 1.07998 * 119.77714 * 0.26061 * 19 18 17 38 38 H 1.07992 * 119.70972 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.90905 * 180.02562 * 21 20 19 40 40 H 1.08003 * 119.90679 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0800 0.9740 -2.3757 7 6 1.9925 -0.4024 -3.7283 8 7 2.6705 -1.5225 -3.8513 9 14 1.4976 0.5619 -5.2497 10 1 2.0897 1.9224 -5.1877 11 1 1.9928 -0.1381 -6.4622 12 1 0.0176 0.6683 -5.3087 13 6 2.0400 -0.7211 1.2493 14 7 1.6514 0.0376 2.4457 15 6 2.1247 -0.6269 3.6673 16 6 1.7087 0.1789 4.8708 17 6 0.5704 0.0172 5.5158 18 6 0.3796 0.9037 6.6523 19 6 -0.7088 0.9900 7.5471 20 6 -0.7009 1.9021 8.5571 21 6 0.3768 2.7615 8.7247 22 6 1.4502 2.6992 7.8681 23 6 1.4630 1.7696 6.8234 24 16 2.6737 1.4555 5.5866 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6054 -1.7198 -1.2950 29 1 3.1264 -0.7995 -1.2054 30 1 2.9272 -2.0234 -3.0613 31 1 1.6054 -1.7197 1.2953 32 1 3.1264 -0.7994 1.2057 33 1 1.9881 0.9874 2.3966 34 1 1.6903 -1.6247 3.7298 35 1 3.2117 -0.7049 3.6406 36 1 -0.1632 -0.7198 5.2240 37 1 -1.5538 0.3278 7.4293 38 1 -1.5401 1.9579 9.2345 39 1 0.3717 3.4809 9.5302 40 1 2.2863 3.3695 8.0028 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602585579.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:33 Heat of formation + Delta-G solvation = 2.512314 kcal Electronic energy + Delta-G solvation = -19188.990171 eV Core-core repulsion = 16286.007502 eV Total energy + Delta-G solvation = -2902.982669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.44559 -38.72202 -36.95433 -35.42743 -33.83148 -31.93659 -30.80515 -28.49368 -27.47208 -25.80743 -24.44250 -24.06474 -22.80220 -21.48974 -20.82229 -18.86651 -18.81916 -17.08646 -16.81549 -16.23852 -16.11698 -15.96650 -15.59959 -15.56869 -15.16524 -14.71287 -14.54003 -14.42187 -13.95461 -13.71256 -13.49695 -13.15740 -12.97473 -12.88334 -12.55653 -12.41337 -12.14030 -12.09235 -11.95898 -11.88339 -11.61712 -11.56646 -11.33914 -10.65125 -10.57559 -10.52327 -9.58548 -9.37535 -8.72926 -8.65621 -6.34596 -0.27532 0.28470 0.49513 0.97261 1.27599 1.52172 1.60672 1.79649 2.57496 2.76697 3.17025 3.18363 3.51813 3.83853 3.97966 4.05588 4.08577 4.18565 4.28404 4.38379 4.39674 4.45116 4.55458 4.75215 4.75578 4.78074 4.84620 4.86613 5.05818 5.06523 5.09450 5.31003 5.34201 5.36159 5.46497 5.48418 5.54734 5.62551 5.86618 5.94582 6.07395 6.21497 6.27215 6.62154 7.45919 8.75092 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.035379 B = 0.002509 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.250575 B =11157.884895 C =11273.219728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.068 4.068 3 H 0.050 0.950 4 C 0.016 3.984 5 C -0.605 4.605 6 H 0.051 0.949 7 C -0.043 4.043 8 N -0.941 5.941 9 Si 1.115 2.885 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.077 3.923 14 N -0.679 5.679 15 C 0.128 3.872 16 C -0.160 4.160 17 C -0.105 4.105 18 C -0.098 4.098 19 C -0.088 4.088 20 C -0.120 4.120 21 C -0.101 4.101 22 C -0.101 4.101 23 C -0.155 4.155 24 S 0.065 5.935 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.066 0.934 28 H -0.011 1.011 29 H -0.017 1.017 30 H 0.254 0.746 31 H 0.070 0.930 32 H 0.022 0.978 33 H 0.341 0.659 34 H 0.099 0.901 35 H 0.044 0.956 36 H 0.156 0.844 37 H 0.144 0.856 38 H 0.157 0.843 39 H 0.159 0.841 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.092 7.095 28.255 29.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 H 0.069 0.931 4 C -0.021 4.021 5 C -0.643 4.643 6 H 0.070 0.930 7 C -0.240 4.240 8 N -0.579 5.579 9 Si 0.937 3.063 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.194 1.194 13 C -0.052 4.052 14 N -0.310 5.310 15 C -0.002 4.002 16 C -0.276 4.276 17 C -0.135 4.135 18 C -0.105 4.105 19 C -0.108 4.108 20 C -0.140 4.140 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.270 4.270 24 S 0.329 5.671 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.007 0.993 29 H 0.001 0.999 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.040 0.960 33 H 0.159 0.841 34 H 0.117 0.883 35 H 0.062 0.938 36 H 0.173 0.827 37 H 0.161 0.839 38 H 0.175 0.825 39 H 0.177 0.823 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.189 7.377 26.232 27.570 hybrid contribution -0.049 -0.773 1.589 1.767 sum -4.238 6.604 27.820 28.906 Atomic orbital electron populations 1.21471 0.94509 1.00477 1.00475 1.20896 0.96844 0.98217 0.92734 0.93108 1.19187 0.93775 0.94982 0.94193 1.22432 1.38021 1.10415 0.93438 0.93043 1.27398 0.94103 0.97291 1.05194 1.70917 1.38256 1.15958 1.32809 0.82960 0.76962 0.74540 0.71881 1.19488 1.21017 1.19427 1.21898 0.96852 0.97566 0.88901 1.60517 1.64026 1.05838 1.00592 1.20447 0.97875 0.96862 0.85016 1.23769 0.99172 1.02537 1.02110 1.21079 0.97322 1.00625 0.94484 1.19570 0.96058 0.97264 0.97653 1.21055 0.96716 0.99248 0.93751 1.21127 0.99626 0.95119 0.98110 1.21475 0.92535 0.99207 0.98907 1.20803 1.00437 0.97483 0.93591 1.22960 0.99012 1.03043 1.02028 1.84121 1.21764 1.35560 1.25632 0.94527 0.94385 0.91487 0.99297 0.99852 0.93654 0.91148 0.95980 0.84077 0.88252 0.93834 0.82672 0.83861 0.82529 0.82303 0.84385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.36 8.89 71.98 0.64 -3.72 16 2 C -0.07 -2.80 2.48 -10.79 -0.03 -2.83 16 3 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 4 C 0.02 0.85 3.76 29.85 0.11 0.96 16 5 C -0.61 -34.88 8.41 25.60 0.22 -34.67 16 6 H 0.05 2.89 7.06 -2.91 -0.02 2.87 16 7 C -0.04 -2.54 5.46 84.66 0.46 -2.08 16 8 N -0.94 -59.49 13.65 21.45 0.29 -59.20 16 9 Si 1.12 51.20 29.90 68.60 2.05 53.25 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 C 0.08 2.59 5.07 86.30 0.44 3.03 16 14 N -0.68 -19.18 5.94 -517.90 -3.08 -22.26 16 15 C 0.13 3.06 6.12 85.56 0.52 3.59 16 16 C -0.16 -3.74 5.89 24.90 0.15 -3.59 16 17 C -0.10 -2.32 10.21 23.32 0.24 -2.08 16 18 C -0.10 -2.10 6.04 -20.35 -0.12 -2.22 16 19 C -0.09 -1.44 10.05 22.49 0.23 -1.21 16 20 C -0.12 -1.51 9.95 21.92 0.22 -1.29 16 21 C -0.10 -1.28 10.03 22.24 0.22 -1.06 16 22 C -0.10 -1.71 10.07 22.48 0.23 -1.49 16 23 C -0.16 -3.38 6.48 23.02 0.15 -3.23 16 24 S 0.06 1.46 23.20 -56.49 -1.31 0.15 16 25 H 0.04 1.54 6.95 -2.39 -0.02 1.52 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 2.29 7.75 -2.39 -0.02 2.27 16 28 H -0.01 -0.63 8.00 -2.39 -0.02 -0.65 16 29 H -0.02 -0.94 8.01 -2.39 -0.02 -0.96 16 30 H 0.25 16.24 7.22 -92.71 -0.67 15.57 16 31 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.34 9.64 8.72 -89.70 -0.78 8.86 16 34 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 38 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 39 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 40 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -68.04 345.78 1.97 -66.07 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.34 Total: 13.90 kcal Atomic # 6 Polarization: -55.58 SS G_CDS: 3.67 Total: -51.91 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -2.79 Total: -81.46 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 2.05 Total: 53.25 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -1.31 Total: 0.15 kcal Total: -68.04 1.97 -66.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602585579.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.586 kcal (2) G-P(sol) polarization free energy of solvation -68.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds