Wall clock time and date at job start Tue Mar 31 2020 06:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 H 1.07996 * 119.99755 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00135 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99855 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99716 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47438 * 89.99972 * 9 7 5 11 11 H 1.48502 * 109.46801 * 209.99792 * 9 7 5 12 12 H 1.48503 * 109.47368 * 329.99562 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 N 1.46905 * 109.47028 * 64.99820 * 13 2 1 15 15 C 1.46897 * 111.00138 * 179.97438 * 14 13 2 16 16 C 1.50699 * 109.47187 * 180.02562 * 15 14 13 17 17 C 1.31823 * 124.29812 * 89.72684 * 16 15 14 18 18 C 1.45392 * 114.89336 * 179.84904 * 17 16 15 19 19 C 1.41180 * 129.34287 * 180.22776 * 18 17 16 20 20 C 1.36096 * 120.45360 * 180.27813 * 19 18 17 21 21 C 1.38847 * 120.59400 * 359.94838 * 20 19 18 22 22 C 1.37463 * 120.18770 * 0.02562 * 21 20 19 23 23 C 1.39743 * 111.82945 * 0.42618 * 18 17 16 24 24 S 1.75307 * 124.30062 * 270.02880 * 16 15 14 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 29 29 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 30 30 H 0.97002 * 119.99949 * 180.02562 * 8 7 5 31 31 H 1.08994 * 109.47465 * 185.00197 * 13 2 1 32 32 H 1.08998 * 109.47565 * 305.00629 * 13 2 1 33 33 H 1.00906 * 110.99658 * 56.04875 * 14 13 2 34 34 H 1.08996 * 109.47257 * 300.00577 * 15 14 13 35 35 H 1.09004 * 109.46984 * 60.00897 * 15 14 13 36 36 H 1.07995 * 122.55364 * 0.02562 * 17 16 15 37 37 H 1.07995 * 119.76986 * 0.25353 * 19 18 17 38 38 H 1.08001 * 119.69403 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.90158 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.90670 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 1.6449 0.2773 4.7994 9 14 2.9626 -1.9889 3.9028 10 1 4.4161 -1.6855 3.8792 11 1 2.6144 -2.6430 5.1897 12 1 2.6287 -2.8996 2.7784 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 2.1258 -0.6266 -3.6671 16 6 1.7098 0.1791 -4.8708 17 6 2.4329 1.1428 -5.4056 18 6 1.8360 1.7838 -6.5661 19 6 2.3387 2.8320 -7.3671 20 6 1.6166 3.3027 -8.4202 21 6 0.3754 2.7599 -8.7249 22 6 -0.1382 1.7381 -7.9623 23 6 0.5867 1.2392 -6.8753 24 16 0.1993 -0.0411 -5.7330 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6054 -1.7199 1.2952 29 1 3.1263 -0.7995 1.2056 30 1 1.8921 -0.0456 5.6800 31 1 3.1263 -0.7996 -1.2055 32 1 1.6054 -1.7198 -1.2952 33 1 1.9882 0.9872 -2.3967 34 1 3.2127 -0.7038 -3.6400 35 1 1.6920 -1.6247 -3.7300 36 1 3.3966 1.4321 -5.0135 37 1 3.3028 3.2636 -7.1422 38 1 2.0128 4.1053 -9.0246 39 1 -0.1880 3.1417 -9.5635 40 1 -1.1039 1.3190 -8.2036 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602585580.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:37 Heat of formation + Delta-G solvation = 26.499445 kcal Electronic energy + Delta-G solvation = -19195.789440 eV Core-core repulsion = 16293.846931 eV Total energy + Delta-G solvation = -2901.942509 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.72734 -37.43722 -35.72995 -33.75212 -32.03434 -31.25480 -29.90922 -27.51792 -26.24450 -24.38818 -23.60295 -22.18183 -21.89504 -20.30915 -19.18014 -18.06072 -16.78115 -16.29779 -15.62316 -15.49587 -15.08093 -14.78331 -14.29055 -14.04622 -13.97898 -13.72274 -13.53220 -13.11185 -12.75409 -12.29089 -12.15860 -11.83094 -11.67624 -11.59622 -11.40430 -11.32654 -10.94746 -10.77894 -10.67892 -10.38859 -9.92370 -9.90242 -9.66100 -9.45605 -9.06156 -8.69219 -8.51105 -8.28965 -7.88699 -6.01336 -3.98265 0.49800 0.98427 1.35098 1.86228 2.05104 3.31193 3.38976 3.42474 3.46472 4.18770 4.47136 4.48528 4.55275 4.65122 4.87260 5.01573 5.03998 5.21617 5.32059 5.37706 5.48598 5.54806 5.55936 5.70176 5.71942 5.83643 6.00920 6.03943 6.17727 6.25418 6.27777 6.39730 6.58236 6.58515 6.83856 7.02881 7.11227 7.19103 7.28815 7.45214 7.52150 7.83239 8.58191 9.04611 9.61451 11.12129 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.036905 B = 0.002577 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.517697 B =10864.371637 C =10909.328685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 H 0.060 0.940 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.061 3.939 14 N -0.681 5.681 15 C 0.122 3.878 16 C -0.139 4.139 17 C -0.126 4.126 18 C -0.071 4.071 19 C -0.080 4.080 20 C -0.122 4.122 21 C -0.108 4.108 22 C -0.084 4.084 23 C -0.145 4.145 24 S 0.110 5.890 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.039 0.961 28 H 0.016 0.984 29 H 0.008 0.992 30 H 0.262 0.738 31 H 0.026 0.974 32 H 0.068 0.932 33 H 0.342 0.658 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.143 0.857 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.274 2.073 -28.372 28.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.092 4.092 3 H 0.078 0.922 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.312 5.312 15 C -0.009 4.009 16 C -0.255 4.255 17 C -0.157 4.157 18 C -0.080 4.080 19 C -0.100 4.100 20 C -0.142 4.142 21 C -0.129 4.129 22 C -0.106 4.106 23 C -0.261 4.261 24 S 0.375 5.625 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.160 0.840 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.160 0.840 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.553 0.734 -27.928 27.981 hybrid contribution 2.691 0.347 0.165 2.719 sum 1.138 1.081 -27.763 27.807 Atomic orbital electron populations 1.21602 0.95176 1.00675 1.00772 1.21005 0.96455 0.99021 0.92724 0.92173 1.19619 0.95352 0.96266 0.93466 1.21129 1.35317 1.09521 0.89074 0.90811 1.25034 0.95736 0.96901 0.95967 1.69914 1.47228 1.39282 0.98007 0.86803 0.80556 0.84551 0.77494 1.20462 1.21469 1.19071 1.22221 0.97261 0.97842 0.89400 1.60555 1.64042 1.05987 1.00645 1.20460 0.97806 0.96598 0.86002 1.23885 0.98023 1.01964 1.01665 1.20850 1.01606 0.97145 0.96118 1.19265 0.93872 0.98179 0.96650 1.20721 0.99806 0.95054 0.94436 1.20688 0.95184 1.00518 0.97807 1.21028 0.96087 0.96279 0.99522 1.20482 0.99308 0.97155 0.93654 1.22853 0.98913 1.02704 1.01604 1.84259 1.19742 1.35399 1.23058 0.93647 0.92202 0.94196 0.96575 0.97389 0.92833 0.95551 0.91332 0.83951 0.93261 0.89819 0.83971 0.85682 0.85607 0.85393 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.07 -1.43 2.48 -90.62 -0.22 -1.65 16 3 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.31 16 5 C -0.51 -14.50 8.96 -34.44 -0.31 -14.81 16 6 H 0.07 2.25 7.30 -52.49 -0.38 1.86 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 9 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.06 0.97 5.07 -3.82 -0.02 0.95 16 14 N -0.68 -9.35 5.95 -115.06 -0.68 -10.03 16 15 C 0.12 1.41 6.12 -4.98 -0.03 1.38 16 16 C -0.14 -1.59 5.89 -36.20 -0.21 -1.81 16 17 C -0.13 -1.37 10.21 -38.63 -0.39 -1.76 16 18 C -0.07 -0.79 6.04 -105.37 -0.64 -1.42 16 19 C -0.08 -0.73 10.05 -39.23 -0.39 -1.12 16 20 C -0.12 -0.95 9.95 -40.13 -0.40 -1.35 16 21 C -0.11 -0.85 10.03 -39.64 -0.40 -1.25 16 22 C -0.08 -0.78 10.07 -39.26 -0.40 -1.17 16 23 C -0.15 -1.63 6.48 -38.42 -0.25 -1.87 16 24 S 0.11 1.25 23.20 -107.50 -2.49 -1.24 16 25 H 0.04 0.80 7.75 -51.93 -0.40 0.39 16 26 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 29 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.34 4.57 8.72 -39.29 -0.34 4.23 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 39 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -31.13 343.49 -11.50 -42.63 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.07 Total: 0.08 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -3.53 Total: -26.50 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.09 Total: -37.30 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.49 Total: -1.24 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.13 -11.50 -42.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602585580.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.129 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds