Wall clock time and date at job start Tue Mar 31 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 H 1.07996 * 119.99755 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00135 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99855 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99716 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47438 * 89.99972 * 9 7 5 11 11 H 1.48502 * 109.46801 * 209.99792 * 9 7 5 12 12 H 1.48503 * 109.47368 * 329.99562 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 N 1.46905 * 109.47028 * 64.99820 * 13 2 1 15 15 C 1.46897 * 111.00138 * 179.97438 * 14 13 2 16 16 C 1.50699 * 109.47187 * 180.02562 * 15 14 13 17 17 C 1.31823 * 124.29812 * 89.72684 * 16 15 14 18 18 C 1.45392 * 114.89336 * 179.84904 * 17 16 15 19 19 C 1.41180 * 129.34287 * 180.22776 * 18 17 16 20 20 C 1.36096 * 120.45360 * 180.27813 * 19 18 17 21 21 C 1.38847 * 120.59400 * 359.94838 * 20 19 18 22 22 C 1.37463 * 120.18770 * 0.02562 * 21 20 19 23 23 C 1.39743 * 111.82945 * 0.42618 * 18 17 16 24 24 S 1.75307 * 124.30062 * 270.02880 * 16 15 14 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 29 29 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 30 30 H 0.97002 * 119.99949 * 180.02562 * 8 7 5 31 31 H 1.08994 * 109.47465 * 185.00197 * 13 2 1 32 32 H 1.08998 * 109.47565 * 305.00629 * 13 2 1 33 33 H 1.00906 * 110.99658 * 56.04875 * 14 13 2 34 34 H 1.08996 * 109.47257 * 300.00577 * 15 14 13 35 35 H 1.09004 * 109.46984 * 60.00897 * 15 14 13 36 36 H 1.07995 * 122.55364 * 0.02562 * 17 16 15 37 37 H 1.07995 * 119.76986 * 0.25353 * 19 18 17 38 38 H 1.08001 * 119.69403 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.90158 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.90670 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 1.6449 0.2773 4.7994 9 14 2.9626 -1.9889 3.9028 10 1 4.4161 -1.6855 3.8792 11 1 2.6144 -2.6430 5.1897 12 1 2.6287 -2.8996 2.7784 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 2.1258 -0.6266 -3.6671 16 6 1.7098 0.1791 -4.8708 17 6 2.4329 1.1428 -5.4056 18 6 1.8360 1.7838 -6.5661 19 6 2.3387 2.8320 -7.3671 20 6 1.6166 3.3027 -8.4202 21 6 0.3754 2.7599 -8.7249 22 6 -0.1382 1.7381 -7.9623 23 6 0.5867 1.2392 -6.8753 24 16 0.1993 -0.0411 -5.7330 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6054 -1.7199 1.2952 29 1 3.1263 -0.7995 1.2056 30 1 1.8921 -0.0456 5.6800 31 1 3.1263 -0.7996 -1.2055 32 1 1.6054 -1.7198 -1.2952 33 1 1.9882 0.9872 -2.3967 34 1 3.2127 -0.7038 -3.6400 35 1 1.6920 -1.6247 -3.7300 36 1 3.3966 1.4321 -5.0135 37 1 3.3028 3.2636 -7.1422 38 1 2.0128 4.1053 -9.0246 39 1 -0.1880 3.1417 -9.5635 40 1 -1.1039 1.3190 -8.2036 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602585580.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:36 Heat of formation + Delta-G solvation = 9.234620 kcal Electronic energy + Delta-G solvation = -19196.538099 eV Core-core repulsion = 16293.846931 eV Total energy + Delta-G solvation = -2902.691168 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.41850 -38.63142 -36.85525 -35.16537 -33.89868 -31.90867 -30.91880 -29.30234 -27.39101 -25.72675 -24.36199 -23.65683 -22.82371 -21.16891 -20.69275 -18.98826 -18.75335 -17.10880 -16.53552 -16.42255 -16.32084 -15.91956 -15.71689 -15.31781 -15.01009 -14.73044 -14.46388 -14.44060 -14.16301 -13.64280 -13.47697 -13.23830 -12.88853 -12.82968 -12.56798 -12.30281 -12.14726 -12.08256 -12.06590 -11.78916 -11.52677 -11.44577 -11.21291 -11.04829 -10.73110 -10.61452 -9.49614 -9.30655 -8.67116 -8.25619 -6.28050 -0.24020 0.31001 0.56665 1.06871 1.29377 1.35932 1.38288 1.49963 2.38110 2.79001 3.09603 3.24405 3.59725 3.86550 4.03562 4.08286 4.19143 4.23765 4.36993 4.40772 4.47867 4.49770 4.59834 4.78633 4.84395 4.85648 4.88989 4.94458 5.05571 5.08497 5.10339 5.38670 5.39389 5.40368 5.50107 5.54655 5.56375 5.70219 5.72960 5.96822 6.01191 6.34533 6.40810 6.79821 7.35384 8.91260 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.036905 B = 0.002577 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.517697 B =10864.371637 C =10909.328685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.069 4.069 3 H 0.050 0.950 4 C -0.007 4.007 5 C -0.519 4.519 6 H 0.033 0.967 7 C -0.001 4.001 8 N -0.955 5.955 9 Si 0.949 3.051 10 H -0.267 1.267 11 H -0.287 1.287 12 H -0.246 1.246 13 C 0.075 3.925 14 N -0.686 5.686 15 C 0.127 3.873 16 C -0.152 4.152 17 C -0.123 4.123 18 C -0.097 4.097 19 C -0.090 4.090 20 C -0.122 4.122 21 C -0.103 4.103 22 C -0.101 4.101 23 C -0.161 4.161 24 S 0.082 5.918 25 H 0.062 0.938 26 H 0.026 0.974 27 H 0.043 0.957 28 H 0.019 0.981 29 H 0.017 0.983 30 H 0.264 0.736 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.344 0.656 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.158 0.842 37 H 0.143 0.857 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.547 1.493 -30.956 31.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.088 4.088 3 H 0.068 0.932 4 C -0.045 4.045 5 C -0.557 4.557 6 H 0.051 0.949 7 C -0.197 4.197 8 N -0.596 5.596 9 Si 0.773 3.227 10 H -0.192 1.192 11 H -0.213 1.213 12 H -0.169 1.169 13 C -0.053 4.053 14 N -0.318 5.318 15 C -0.003 4.003 16 C -0.268 4.268 17 C -0.154 4.154 18 C -0.105 4.105 19 C -0.109 4.109 20 C -0.141 4.141 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.277 4.277 24 S 0.347 5.653 25 H 0.081 0.919 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.163 0.837 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.175 0.825 37 H 0.161 0.839 38 H 0.173 0.827 39 H 0.175 0.825 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.280 0.158 -30.544 30.546 hybrid contribution 2.232 0.705 0.858 2.493 sum 1.952 0.863 -29.686 29.763 Atomic orbital electron populations 1.21498 0.95284 1.00643 0.99917 1.20877 0.96303 0.98518 0.93121 0.93173 1.19573 0.95840 0.95912 0.93144 1.21459 1.34292 1.08610 0.91303 0.94867 1.26028 0.97127 1.01004 0.95524 1.70078 1.49183 1.41634 0.98723 0.85670 0.79137 0.79866 0.78028 1.19248 1.21308 1.16912 1.21930 0.97599 0.97453 0.88358 1.60463 1.64522 1.06078 1.00731 1.20429 0.98586 0.96360 0.84892 1.23839 0.98148 1.02803 1.02055 1.21092 1.01959 0.96480 0.95826 1.19548 0.94220 0.99297 0.97390 1.21046 1.00792 0.94582 0.94503 1.21110 0.94923 1.00714 0.97401 1.21453 0.96193 0.95120 0.99593 1.20797 1.00002 0.97924 0.93610 1.23058 0.99549 1.02817 1.02233 1.84214 1.20541 1.36452 1.24045 0.91937 0.95503 0.93756 0.96292 0.96475 0.92707 0.94601 0.90903 0.83731 0.91810 0.89710 0.82497 0.83898 0.82689 0.82474 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.48 8.89 71.98 0.64 -3.84 16 2 C -0.07 -2.66 2.48 -10.79 -0.03 -2.68 16 3 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.01 -0.32 3.52 29.85 0.10 -0.21 16 5 C -0.52 -29.99 8.96 25.60 0.23 -29.76 16 6 H 0.03 2.13 7.30 -2.91 -0.02 2.10 16 7 C 0.00 -0.05 5.47 84.66 0.46 0.41 16 8 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 9 Si 0.95 44.64 27.47 68.60 1.88 46.53 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 13 C 0.08 2.23 5.07 86.30 0.44 2.67 16 14 N -0.69 -17.73 5.95 -517.94 -3.08 -20.81 16 15 C 0.13 2.73 6.12 85.56 0.52 3.26 16 16 C -0.15 -3.35 5.89 24.90 0.15 -3.20 16 17 C -0.12 -2.51 10.21 23.33 0.24 -2.27 16 18 C -0.10 -2.02 6.04 -20.35 -0.12 -2.14 16 19 C -0.09 -1.44 10.05 22.49 0.23 -1.21 16 20 C -0.12 -1.55 9.95 21.92 0.22 -1.33 16 21 C -0.10 -1.34 10.03 22.23 0.22 -1.12 16 22 C -0.10 -1.74 10.07 22.48 0.23 -1.52 16 23 C -0.16 -3.50 6.48 23.02 0.15 -3.35 16 24 S 0.08 1.86 23.20 -56.49 -1.31 0.55 16 25 H 0.06 2.17 7.75 -2.39 -0.02 2.15 16 26 H 0.03 1.17 6.95 -2.39 -0.02 1.16 16 27 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 29 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 30 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.34 8.71 8.72 -89.69 -0.78 7.92 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 37 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 39 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -68.54 343.49 1.66 -66.89 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.19 Total: 13.66 kcal Atomic # 6 Polarization: -49.98 SS G_CDS: 3.68 Total: -46.30 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -2.78 Total: -81.32 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.53 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.31 Total: 0.55 kcal Total: -68.54 1.66 -66.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602585580.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.122 kcal (2) G-P(sol) polarization free energy of solvation -68.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds