Wall clock time and date at job start Tue Mar 31 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47087 * 2 1 4 4 C 1.52998 * 109.47237 * 119.99516 * 2 1 3 5 5 C 1.50704 * 109.47437 * 295.00393 * 4 2 1 6 6 H 1.08001 * 119.99679 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00160 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00369 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99823 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47392 * 60.00171 * 9 7 5 11 11 H 1.48504 * 109.47362 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47380 * 299.99861 * 9 7 5 13 13 C 1.52992 * 109.47548 * 239.99959 * 2 1 3 14 14 N 1.46893 * 109.47335 * 64.99488 * 13 2 1 15 15 C 1.46904 * 111.00433 * 180.02562 * 14 13 2 16 16 C 1.50701 * 109.47346 * 180.02562 * 15 14 13 17 17 C 1.38850 * 119.70537 * 270.02381 * 16 15 14 18 18 C 1.37460 * 120.18799 * 179.97438 * 17 16 15 19 19 C 1.39861 * 120.17871 * 359.97438 * 18 17 16 20 20 S 1.75899 * 130.56112 * 180.02562 * 19 18 17 21 21 C 1.75300 * 92.18992 * 179.80978 * 20 19 18 22 22 C 1.31823 * 111.40425 * 0.34327 * 21 20 19 23 23 C 1.39739 * 119.75424 * 0.02562 * 19 18 17 24 24 C 1.36089 * 119.70371 * 90.00005 * 16 15 14 25 25 H 1.09004 * 109.47545 * 300.00306 * 1 2 3 26 26 H 1.09002 * 109.47325 * 60.00606 * 1 2 3 27 27 H 1.09006 * 109.46577 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47222 * 55.00327 * 4 2 1 29 29 H 1.09003 * 109.47115 * 175.00287 * 4 2 1 30 30 H 0.96999 * 120.00326 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.46656 * 304.99722 * 13 2 1 32 32 H 1.08995 * 109.47859 * 185.00036 * 13 2 1 33 33 H 1.00900 * 111.00457 * 56.04861 * 14 13 2 34 34 H 1.09001 * 109.46741 * 59.99757 * 15 14 13 35 35 H 1.08999 * 109.47155 * 300.00348 * 15 14 13 36 36 H 1.07998 * 119.90315 * 359.97438 * 17 16 15 37 37 H 1.08002 * 119.90854 * 180.02562 * 18 17 16 38 38 H 1.08001 * 124.29932 * 180.20788 * 21 20 19 39 39 H 1.08002 * 122.55881 * 179.86560 * 22 21 20 40 40 H 1.08007 * 119.77569 * 0.02600 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9747 2.3757 7 6 1.9932 -0.4015 3.7283 8 7 2.6764 -1.5184 3.8513 9 14 1.4996 0.5637 5.2495 10 1 0.0196 0.6702 5.3096 11 1 1.9945 -0.1363 6.4622 12 1 2.0917 1.9241 5.1865 13 6 2.0401 -0.7212 -1.2491 14 7 1.6514 0.0373 -2.4455 15 6 2.1249 -0.6272 -3.6672 16 6 1.7088 0.1785 -4.8708 17 6 0.4878 -0.0762 -5.4808 18 6 0.0982 0.6530 -6.5789 19 6 0.9294 1.6562 -7.0877 20 16 0.7090 2.7397 -8.4557 21 6 2.2563 3.5150 -8.1771 22 6 2.8796 2.9871 -7.1424 23 6 2.1589 1.9147 -6.4758 24 6 2.5331 1.1496 -5.3500 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.6054 -1.7197 1.2953 29 1 3.1263 -0.7993 1.2056 30 1 2.9244 -1.8409 4.7319 31 1 1.6054 -1.7198 -1.2950 32 1 3.1263 -0.7995 -1.2055 33 1 1.9881 0.9872 -2.3967 34 1 1.6906 -1.6250 -3.7295 35 1 3.2117 -0.7051 -3.6405 36 1 -0.1577 -0.8495 -5.0913 37 1 -0.8527 0.4514 -7.0496 38 1 2.6501 4.3213 -8.7782 39 1 3.8496 3.3282 -6.8121 40 1 3.4801 1.3366 -4.8653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602669781.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:43 Heat of formation + Delta-G solvation = 23.060284 kcal Electronic energy + Delta-G solvation = -19276.887431 eV Core-core repulsion = 16374.795789 eV Total energy + Delta-G solvation = -2902.091642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.89311 -37.08523 -35.60522 -33.87495 -32.18451 -30.89477 -29.63348 -26.98454 -26.13201 -24.35970 -23.43399 -22.57360 -22.01911 -20.19581 -19.03176 -18.22290 -16.38703 -16.28158 -15.47218 -15.32029 -14.97398 -14.73811 -14.30432 -14.03536 -13.91739 -13.72077 -13.49069 -12.94312 -12.47617 -12.27162 -12.18737 -11.59538 -11.52869 -11.40674 -11.33241 -11.25945 -10.86622 -10.82911 -10.74410 -10.28201 -10.23772 -9.84618 -9.69013 -9.14702 -8.96524 -8.68206 -8.31747 -8.17391 -7.90500 -5.96677 -3.97779 0.52900 1.02894 1.29583 1.74278 2.06836 3.35198 3.39461 3.42067 3.48101 4.28545 4.47063 4.56080 4.57957 4.76382 4.97721 5.04599 5.13271 5.38099 5.39038 5.44724 5.55323 5.65519 5.67129 5.75825 5.84220 5.89953 6.08300 6.16313 6.16717 6.41145 6.45878 6.55254 6.67347 6.69989 7.01404 7.19138 7.20480 7.33793 7.61675 7.70417 7.86207 8.03500 8.47589 9.08388 9.65514 11.14837 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.034016 B = 0.002418 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.948071 B =11574.701749 C =11728.644292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.063 3.937 14 N -0.682 5.682 15 C 0.095 3.905 16 C -0.071 4.071 17 C -0.076 4.076 18 C -0.088 4.088 19 C -0.137 4.137 20 S 0.069 5.931 21 C -0.195 4.195 22 C -0.114 4.114 23 C -0.080 4.080 24 C -0.074 4.074 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.016 0.984 29 H 0.012 0.988 30 H 0.260 0.740 31 H 0.067 0.933 32 H 0.025 0.975 33 H 0.338 0.662 34 H 0.081 0.919 35 H 0.037 0.963 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.166 0.834 39 H 0.145 0.855 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.338 6.084 -25.532 26.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.313 5.313 15 C -0.034 4.034 16 C -0.074 4.074 17 C -0.097 4.097 18 C -0.111 4.111 19 C -0.252 4.252 20 S 0.332 5.668 21 C -0.329 4.329 22 C -0.145 4.145 23 C -0.087 4.087 24 C -0.095 4.095 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.035 0.965 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.156 0.844 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.184 0.816 39 H 0.162 0.838 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.977 5.948 -26.538 27.358 hybrid contribution 1.895 0.551 1.960 2.781 sum -1.081 6.499 -24.578 25.446 Atomic orbital electron populations 1.21588 0.95698 1.00558 1.00163 1.21197 0.96035 0.98907 0.93968 0.92857 1.19120 0.95890 0.95582 0.90419 1.21203 1.34641 1.08284 0.91001 0.92625 1.25018 0.95344 0.95102 0.99087 1.69951 1.39051 1.21242 1.23477 0.86691 0.78920 0.80096 0.82484 1.20258 1.21380 1.20323 1.22183 0.97248 0.97766 0.89306 1.60579 1.63987 1.05797 1.00934 1.20914 0.97573 0.97300 0.87574 1.19432 0.94537 0.96730 0.96652 1.20992 0.95635 0.99007 0.94093 1.20465 0.98811 0.94792 0.97023 1.22675 0.99067 1.02479 1.00975 1.84100 1.19759 1.32427 1.30516 1.25003 0.98935 1.05763 1.03163 1.20985 1.01062 0.96351 0.96054 1.19267 0.93864 0.97971 0.97642 1.20600 0.99811 0.94578 0.94476 0.92806 0.93923 0.94164 0.96542 0.96944 0.93048 0.91415 0.95667 0.84390 0.90057 0.94489 0.84865 0.85563 0.81642 0.83750 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 2 C -0.08 -1.67 2.48 -90.63 -0.22 -1.89 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.40 8.41 -34.44 -0.29 -14.69 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.06 1.07 5.07 -3.83 -0.02 1.05 16 14 N -0.68 -9.64 5.94 -115.06 -0.68 -10.32 16 15 C 0.10 1.12 5.79 -4.97 -0.03 1.09 16 16 C -0.07 -0.80 5.34 -105.17 -0.56 -1.36 16 17 C -0.08 -0.81 9.67 -39.64 -0.38 -1.20 16 18 C -0.09 -0.92 10.07 -39.26 -0.40 -1.31 16 19 C -0.14 -1.51 6.48 -38.41 -0.25 -1.76 16 20 S 0.07 0.64 23.23 -107.50 -2.50 -1.86 16 21 C -0.20 -1.62 11.02 28.84 0.32 -1.30 16 22 C -0.11 -1.05 10.39 -38.63 -0.40 -1.45 16 23 C -0.08 -0.88 6.04 -105.38 -0.64 -1.52 16 24 C -0.07 -0.81 9.66 -39.24 -0.38 -1.19 16 25 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 26 H 0.04 0.75 7.75 -51.93 -0.40 0.34 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.34 4.68 8.72 -39.29 -0.34 4.34 16 34 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.04 0.42 8.07 -51.93 -0.42 0.00 16 36 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 38 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 346.63 15.07 5.22 5.22 Total: -1.00 -30.46 346.63 -11.49 -41.95 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.10 Total: 0.07 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -3.14 Total: -25.52 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.05 Total: -36.62 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -2.50 Total: -1.86 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.46 -11.49 -41.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602669781.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.008 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds