Wall clock time and date at job start Tue Mar 31 2020 06:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47087 * 2 1 4 4 C 1.52998 * 109.47237 * 119.99516 * 2 1 3 5 5 C 1.50704 * 109.47437 * 295.00393 * 4 2 1 6 6 H 1.08001 * 119.99679 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00160 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00369 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99823 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47392 * 60.00171 * 9 7 5 11 11 H 1.48504 * 109.47362 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47380 * 299.99861 * 9 7 5 13 13 C 1.52992 * 109.47548 * 239.99959 * 2 1 3 14 14 N 1.46893 * 109.47335 * 64.99488 * 13 2 1 15 15 C 1.46904 * 111.00433 * 180.02562 * 14 13 2 16 16 C 1.50701 * 109.47346 * 180.02562 * 15 14 13 17 17 C 1.38850 * 119.70537 * 270.02381 * 16 15 14 18 18 C 1.37460 * 120.18799 * 179.97438 * 17 16 15 19 19 C 1.39861 * 120.17871 * 359.97438 * 18 17 16 20 20 S 1.75899 * 130.56112 * 180.02562 * 19 18 17 21 21 C 1.75300 * 92.18992 * 179.80978 * 20 19 18 22 22 C 1.31823 * 111.40425 * 0.34327 * 21 20 19 23 23 C 1.39739 * 119.75424 * 0.02562 * 19 18 17 24 24 C 1.36089 * 119.70371 * 90.00005 * 16 15 14 25 25 H 1.09004 * 109.47545 * 300.00306 * 1 2 3 26 26 H 1.09002 * 109.47325 * 60.00606 * 1 2 3 27 27 H 1.09006 * 109.46577 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47222 * 55.00327 * 4 2 1 29 29 H 1.09003 * 109.47115 * 175.00287 * 4 2 1 30 30 H 0.96999 * 120.00326 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.46656 * 304.99722 * 13 2 1 32 32 H 1.08995 * 109.47859 * 185.00036 * 13 2 1 33 33 H 1.00900 * 111.00457 * 56.04861 * 14 13 2 34 34 H 1.09001 * 109.46741 * 59.99757 * 15 14 13 35 35 H 1.08999 * 109.47155 * 300.00348 * 15 14 13 36 36 H 1.07998 * 119.90315 * 359.97438 * 17 16 15 37 37 H 1.08002 * 119.90854 * 180.02562 * 18 17 16 38 38 H 1.08001 * 124.29932 * 180.20788 * 21 20 19 39 39 H 1.08002 * 122.55881 * 179.86560 * 22 21 20 40 40 H 1.08007 * 119.77569 * 0.02600 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9747 2.3757 7 6 1.9932 -0.4015 3.7283 8 7 2.6764 -1.5184 3.8513 9 14 1.4996 0.5637 5.2495 10 1 0.0196 0.6702 5.3096 11 1 1.9945 -0.1363 6.4622 12 1 2.0917 1.9241 5.1865 13 6 2.0401 -0.7212 -1.2491 14 7 1.6514 0.0373 -2.4455 15 6 2.1249 -0.6272 -3.6672 16 6 1.7088 0.1785 -4.8708 17 6 0.4878 -0.0762 -5.4808 18 6 0.0982 0.6530 -6.5789 19 6 0.9294 1.6562 -7.0877 20 16 0.7090 2.7397 -8.4557 21 6 2.2563 3.5150 -8.1771 22 6 2.8796 2.9871 -7.1424 23 6 2.1589 1.9147 -6.4758 24 6 2.5331 1.1496 -5.3500 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.6054 -1.7197 1.2953 29 1 3.1263 -0.7993 1.2056 30 1 2.9244 -1.8409 4.7319 31 1 1.6054 -1.7198 -1.2950 32 1 3.1263 -0.7995 -1.2055 33 1 1.9881 0.9872 -2.3967 34 1 1.6906 -1.6250 -3.7295 35 1 3.2117 -0.7051 -3.6405 36 1 -0.1577 -0.8495 -5.0913 37 1 -0.8527 0.4514 -7.0496 38 1 2.6501 4.3213 -8.7782 39 1 3.8496 3.3282 -6.8121 40 1 3.4801 1.3366 -4.8653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602669781.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:42 Heat of formation + Delta-G solvation = 7.186259 kcal Electronic energy + Delta-G solvation = -19277.575781 eV Core-core repulsion = 16374.795789 eV Total energy + Delta-G solvation = -2902.779992 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.67421 -38.38593 -36.65414 -35.29969 -33.94113 -31.95595 -30.44666 -28.86417 -27.39549 -25.81973 -24.26290 -23.94812 -23.08085 -21.15512 -20.50297 -18.96441 -18.47362 -17.15683 -16.61768 -16.33502 -16.31556 -15.93095 -15.65071 -15.28801 -14.68470 -14.66106 -14.45715 -14.39335 -14.08556 -13.54122 -13.27393 -13.11949 -13.02622 -12.74094 -12.58950 -12.42700 -12.20709 -12.11782 -12.08703 -11.92647 -11.59705 -11.46666 -11.08105 -10.92317 -10.59175 -10.51813 -9.47195 -9.31027 -8.65258 -8.16445 -6.25374 -0.20951 0.21767 0.58934 1.04825 1.35936 1.40696 1.43275 1.50919 2.42737 2.65635 3.16888 3.40169 3.65959 3.81923 3.87947 4.17010 4.23761 4.30388 4.35818 4.41220 4.55665 4.63846 4.66031 4.83813 4.84303 4.91945 4.96031 4.99758 5.04790 5.09921 5.30025 5.30990 5.44569 5.48041 5.52737 5.57315 5.63908 5.82915 5.88904 5.90572 6.06603 6.32780 6.47401 6.90528 7.42724 8.95345 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.034016 B = 0.002418 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.948071 B =11574.701749 C =11728.644292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 H 0.052 0.948 4 C 0.032 3.968 5 C -0.530 4.530 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.077 3.923 14 N -0.680 5.680 15 C 0.100 3.900 16 C -0.079 4.079 17 C -0.086 4.086 18 C -0.094 4.094 19 C -0.158 4.158 20 S 0.074 5.926 21 C -0.189 4.189 22 C -0.129 4.129 23 C -0.096 4.096 24 C -0.081 4.081 25 H 0.035 0.965 26 H 0.065 0.935 27 H 0.036 0.964 28 H -0.009 1.009 29 H -0.013 1.013 30 H 0.262 0.738 31 H 0.065 0.935 32 H 0.021 0.979 33 H 0.342 0.658 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.195 0.805 39 H 0.164 0.836 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.768 7.556 -26.599 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 H 0.070 0.930 4 C -0.005 4.005 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.052 4.052 14 N -0.311 5.311 15 C -0.029 4.029 16 C -0.082 4.082 17 C -0.107 4.107 18 C -0.116 4.116 19 C -0.274 4.274 20 S 0.337 5.663 21 C -0.322 4.322 22 C -0.159 4.159 23 C -0.104 4.104 24 C -0.102 4.102 25 H 0.055 0.945 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.009 0.991 29 H 0.005 0.995 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.160 0.840 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.212 0.788 39 H 0.181 0.819 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.414 7.432 -27.628 28.813 hybrid contribution 2.040 0.110 2.194 2.998 sum -1.374 7.542 -25.434 26.564 Atomic orbital electron populations 1.21482 0.94778 1.00397 1.00361 1.21006 0.96647 0.98379 0.93244 0.92960 1.19016 0.94144 0.94717 0.92665 1.21619 1.34424 1.08577 0.92140 0.92197 1.25938 0.95297 0.96110 1.02606 1.70087 1.40265 1.22924 1.24319 0.85583 0.78922 0.78797 0.78252 1.19294 1.21017 1.19273 1.21868 0.96776 0.97435 0.89092 1.60501 1.64121 1.05806 1.00676 1.20899 0.97954 0.97382 0.86630 1.19390 0.95050 0.97104 0.96622 1.21156 0.95703 0.99447 0.94365 1.20703 0.99436 0.94520 0.96947 1.22990 0.99421 1.03117 1.01833 1.84060 1.20553 1.32020 1.29668 1.25387 0.98078 1.05840 1.02902 1.21211 1.02025 0.96223 0.96422 1.19596 0.94298 0.98601 0.97864 1.20761 1.00235 0.94502 0.94658 0.94550 0.91607 0.94496 0.99077 0.99477 0.92947 0.91606 0.96066 0.84042 0.89637 0.93864 0.83932 0.83970 0.78831 0.81868 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.31 8.89 71.98 0.64 -3.67 16 2 C -0.07 -2.99 2.48 -10.80 -0.03 -3.02 16 3 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 4 C 0.03 1.69 4.45 29.85 0.13 1.82 16 5 C -0.53 -30.04 8.41 25.60 0.22 -29.82 16 6 H 0.06 3.27 7.06 -2.91 -0.02 3.25 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 8 N -0.94 -57.31 13.29 21.45 0.28 -57.02 16 9 Si 0.96 44.64 29.54 68.60 2.03 46.66 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 C 0.08 2.56 5.07 86.30 0.44 3.00 16 14 N -0.68 -18.33 5.94 -517.95 -3.08 -21.41 16 15 C 0.10 2.22 5.79 85.56 0.50 2.72 16 16 C -0.08 -1.69 5.34 -20.22 -0.11 -1.80 16 17 C -0.09 -1.73 9.67 22.23 0.22 -1.52 16 18 C -0.09 -1.85 10.07 22.48 0.23 -1.62 16 19 C -0.16 -3.32 6.48 23.03 0.15 -3.17 16 20 S 0.07 1.25 23.23 -56.49 -1.31 -0.06 16 21 C -0.19 -2.70 11.02 67.04 0.74 -1.96 16 22 C -0.13 -2.13 10.39 23.33 0.24 -1.89 16 23 C -0.10 -2.00 6.04 -20.35 -0.12 -2.12 16 24 C -0.08 -1.68 9.66 22.49 0.22 -1.46 16 25 H 0.04 1.49 6.95 -2.39 -0.02 1.47 16 26 H 0.06 2.20 7.75 -2.39 -0.02 2.18 16 27 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 28 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 30 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.34 8.96 8.72 -89.69 -0.78 8.18 16 34 H 0.09 1.84 8.08 -2.39 -0.02 1.82 16 35 H 0.04 0.92 8.07 -2.39 -0.02 0.90 16 36 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 37 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.19 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 40 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -65.21 346.63 2.07 -63.14 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.24 Total: 12.87 kcal Atomic # 6 Polarization: -48.09 SS G_CDS: 3.91 Total: -44.18 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -2.79 Total: -78.43 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -1.31 Total: -0.06 kcal Total: -65.21 2.07 -63.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602669781.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.325 kcal (2) G-P(sol) polarization free energy of solvation -65.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds