Wall clock time and date at job start Tue Mar 31 2020 06:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47430 * 2 1 4 4 C 1.53009 * 109.46714 * 240.00649 * 2 1 3 5 5 C 1.50697 * 109.47152 * 64.99949 * 4 2 1 6 6 H 1.08002 * 120.00031 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99823 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00042 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99950 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46777 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46844 * 120.00258 * 9 7 5 12 12 H 1.48507 * 109.46924 * 240.00162 * 9 7 5 13 13 C 1.52999 * 109.47645 * 120.00747 * 2 1 3 14 14 N 1.46906 * 109.46897 * 294.99789 * 13 2 1 15 15 C 1.46898 * 110.99888 * 179.97438 * 14 13 2 16 16 C 1.50705 * 109.46661 * 180.02562 * 15 14 13 17 17 C 1.37510 * 119.90947 * 259.72519 * 16 15 14 18 18 C 1.38801 * 120.18414 * 179.73234 * 17 16 15 19 19 C 1.36126 * 120.59454 * 0.54300 * 18 17 16 20 20 C 1.41132 * 120.45862 * 359.73583 * 19 18 17 21 21 C 1.45386 * 129.35396 * 179.97438 * 20 19 18 22 22 C 1.31820 * 114.90030 * 179.97438 * 21 20 19 23 23 S 1.75298 * 111.40454 * 359.97438 * 22 21 20 24 24 C 1.39781 * 118.82361 * 359.97438 * 20 19 18 25 25 H 1.08998 * 109.47381 * 59.98990 * 1 2 3 26 26 H 1.08993 * 109.47092 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46455 * 299.99253 * 1 2 3 28 28 H 1.09003 * 109.46685 * 185.00160 * 4 2 1 29 29 H 1.08996 * 109.46802 * 304.99580 * 4 2 1 30 30 H 0.96996 * 120.00202 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47486 * 174.99813 * 13 2 1 32 32 H 1.09001 * 109.47362 * 54.99090 * 13 2 1 33 33 H 1.00902 * 110.99923 * 303.95801 * 14 13 2 34 34 H 1.08995 * 109.47296 * 299.99911 * 15 14 13 35 35 H 1.08997 * 109.47334 * 60.00212 * 15 14 13 36 36 H 1.07997 * 119.90473 * 0.02562 * 17 16 15 37 37 H 1.08008 * 119.70368 * 180.30205 * 18 17 16 38 38 H 1.08005 * 119.77447 * 179.75122 * 19 18 17 39 39 H 1.08008 * 122.55083 * 0.02562 * 21 20 19 40 40 H 1.07997 * 124.29903 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6412 0.0573 -2.4766 6 1 1.0799 0.9744 -2.3756 7 6 1.9931 -0.4014 -3.7284 8 7 2.6762 -1.5185 -3.8514 9 14 1.4982 0.5631 -5.2497 10 1 0.7399 1.7735 -4.8433 11 1 2.7161 0.9687 -5.9964 12 1 0.6448 -0.2866 -6.1186 13 6 2.0401 -0.7214 1.2491 14 7 1.6516 0.0372 2.4456 15 6 2.1250 -0.6275 3.6671 16 6 1.7080 0.1777 4.8709 17 6 2.6140 1.0083 5.4876 18 6 2.2344 1.7566 6.5933 19 6 0.9687 1.6704 7.0868 20 6 0.0196 0.8219 6.4778 21 6 -1.3683 0.5822 6.8385 22 6 -2.0022 -0.2769 6.0654 23 16 -0.9568 -0.8904 4.7991 24 6 0.4028 0.0740 5.3608 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 3.1263 -0.7994 -1.2058 29 1 1.6053 -1.7197 -1.2953 30 1 2.9234 -1.8414 -4.7320 31 1 3.1265 -0.7996 1.2054 32 1 1.6055 -1.7199 1.2950 33 1 1.9883 0.9871 2.3967 34 1 1.6907 -1.6252 3.7295 35 1 3.2119 -0.7054 3.6404 36 1 3.6222 1.0821 5.1076 37 1 2.9509 2.4102 7.0687 38 1 0.6888 2.2557 7.9503 39 1 -1.8441 1.0715 7.6756 40 1 -3.0346 -0.5661 6.1956 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602700462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:46 Heat of formation + Delta-G solvation = 24.129558 kcal Electronic energy + Delta-G solvation = -19655.525234 eV Core-core repulsion = 16753.479959 eV Total energy + Delta-G solvation = -2902.045275 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.79819 -37.01058 -35.45395 -34.04237 -32.24663 -30.76470 -29.44261 -26.97813 -26.09583 -24.26505 -23.75653 -22.25474 -21.68130 -20.48841 -19.11981 -17.81510 -16.34236 -16.17006 -15.43552 -15.33987 -14.96050 -14.75965 -14.31475 -14.11293 -13.95393 -13.53375 -13.14049 -12.69114 -12.47245 -12.27119 -12.07939 -11.79348 -11.49695 -11.39008 -11.30011 -11.22215 -10.84011 -10.72297 -10.54729 -10.26169 -10.20947 -9.68382 -9.65141 -9.12084 -8.92324 -8.64125 -8.31247 -8.15949 -7.71959 -5.95896 -3.96724 0.61845 1.11175 1.52861 2.01313 2.15061 3.33389 3.40938 3.45324 3.54516 4.41004 4.46861 4.51970 4.62333 4.81520 5.01879 5.11052 5.20051 5.29838 5.40042 5.45908 5.65595 5.67589 5.74838 5.80763 5.87971 5.90857 6.18507 6.23388 6.29450 6.35350 6.44261 6.57561 6.71279 6.73151 7.03640 7.21402 7.22968 7.35040 7.63385 7.72212 7.87849 8.04696 8.48949 9.09968 9.66643 11.15718 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.026610 B = 0.003068 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.991273 B = 9123.961389 C = 9589.270647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.680 5.680 15 C 0.092 3.908 16 C -0.041 4.041 17 C -0.103 4.103 18 C -0.119 4.119 19 C -0.083 4.083 20 C -0.083 4.083 21 C -0.125 4.125 22 C -0.204 4.204 23 S 0.122 5.878 24 C -0.118 4.118 25 H 0.052 0.948 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.012 0.988 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.340 0.660 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.141 0.859 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.202 3.760 24.269 24.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.310 5.310 15 C -0.037 4.037 16 C -0.046 4.046 17 C -0.124 4.124 18 C -0.139 4.139 19 C -0.104 4.104 20 C -0.092 4.092 21 C -0.156 4.156 22 C -0.338 4.338 23 S 0.387 5.613 24 C -0.234 4.234 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.030 0.970 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.157 0.843 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.158 0.842 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.077 2.285 22.979 23.644 hybrid contribution 0.904 1.643 0.191 1.885 sum -4.174 3.928 23.170 23.868 Atomic orbital electron populations 1.21583 0.95650 1.00578 1.00174 1.21195 0.96073 0.98877 0.93901 0.92854 1.19126 0.95869 0.95589 0.90443 1.21281 1.34386 1.08277 0.90976 0.92511 1.25025 0.95370 0.95107 0.99103 1.69977 1.39247 1.21272 1.23234 0.86579 0.78234 0.80157 0.83304 1.19736 1.21137 1.21093 1.22182 0.97213 0.97739 0.89259 1.60552 1.63939 1.05801 1.00750 1.20925 0.97817 0.97168 0.87802 1.19259 0.90904 0.97980 0.96466 1.20983 0.99235 0.96127 0.96096 1.20635 0.96248 1.00006 0.97049 1.20640 0.92612 0.97629 0.99475 1.19331 0.94027 0.99472 0.96345 1.20868 0.92534 1.00518 1.01647 1.25229 1.04291 1.03664 1.00577 1.84582 1.00424 1.45644 1.30661 1.22568 0.98155 1.03001 0.99642 0.92846 0.94167 0.93851 0.96964 0.96550 0.93181 0.95666 0.91482 0.84278 0.90372 0.94088 0.85461 0.85634 0.85905 0.84174 0.81792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.89 37.16 0.33 -2.10 16 2 C -0.08 -1.68 2.48 -90.61 -0.22 -1.90 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.06 1.11 5.07 -3.82 -0.02 1.09 16 14 N -0.68 -10.01 5.94 -115.06 -0.68 -10.70 16 15 C 0.09 1.18 5.60 -4.97 -0.03 1.15 16 16 C -0.04 -0.51 5.42 -104.30 -0.57 -1.07 16 17 C -0.10 -1.07 9.64 -39.64 -0.38 -1.46 16 18 C -0.12 -1.11 9.95 -40.13 -0.40 -1.51 16 19 C -0.08 -0.82 10.05 -39.24 -0.39 -1.21 16 20 C -0.08 -0.96 6.04 -105.38 -0.64 -1.60 16 21 C -0.13 -1.24 10.39 -38.64 -0.40 -1.65 16 22 C -0.20 -2.03 11.02 28.84 0.32 -1.71 16 23 S 0.12 1.48 22.81 -107.50 -2.45 -0.97 16 24 C -0.12 -1.50 6.31 -38.42 -0.24 -1.74 16 25 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.34 4.86 8.72 -39.29 -0.34 4.51 16 34 H 0.08 1.03 7.99 -51.93 -0.42 0.62 16 35 H 0.04 0.49 7.99 -51.93 -0.41 0.07 16 36 H 0.13 1.11 8.02 -52.49 -0.42 0.69 16 37 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 40 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -30.90 345.95 -11.45 -42.35 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.09 Total: 0.06 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -3.16 Total: -26.37 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.05 Total: -37.13 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.45 Total: -0.97 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.90 -11.45 -42.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602700462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.480 kcal (2) G-P(sol) polarization free energy of solvation -30.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds