Wall clock time and date at job start Tue Mar 31 2020 06:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47430 * 2 1 4 4 C 1.53009 * 109.46714 * 240.00649 * 2 1 3 5 5 C 1.50697 * 109.47152 * 64.99949 * 4 2 1 6 6 H 1.08002 * 120.00031 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99823 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00042 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99950 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46777 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46844 * 120.00258 * 9 7 5 12 12 H 1.48507 * 109.46924 * 240.00162 * 9 7 5 13 13 C 1.52999 * 109.47645 * 120.00747 * 2 1 3 14 14 N 1.46906 * 109.46897 * 294.99789 * 13 2 1 15 15 C 1.46898 * 110.99888 * 179.97438 * 14 13 2 16 16 C 1.50705 * 109.46661 * 180.02562 * 15 14 13 17 17 C 1.37510 * 119.90947 * 259.72519 * 16 15 14 18 18 C 1.38801 * 120.18414 * 179.73234 * 17 16 15 19 19 C 1.36126 * 120.59454 * 0.54300 * 18 17 16 20 20 C 1.41132 * 120.45862 * 359.73583 * 19 18 17 21 21 C 1.45386 * 129.35396 * 179.97438 * 20 19 18 22 22 C 1.31820 * 114.90030 * 179.97438 * 21 20 19 23 23 S 1.75298 * 111.40454 * 359.97438 * 22 21 20 24 24 C 1.39781 * 118.82361 * 359.97438 * 20 19 18 25 25 H 1.08998 * 109.47381 * 59.98990 * 1 2 3 26 26 H 1.08993 * 109.47092 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46455 * 299.99253 * 1 2 3 28 28 H 1.09003 * 109.46685 * 185.00160 * 4 2 1 29 29 H 1.08996 * 109.46802 * 304.99580 * 4 2 1 30 30 H 0.96996 * 120.00202 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47486 * 174.99813 * 13 2 1 32 32 H 1.09001 * 109.47362 * 54.99090 * 13 2 1 33 33 H 1.00902 * 110.99923 * 303.95801 * 14 13 2 34 34 H 1.08995 * 109.47296 * 299.99911 * 15 14 13 35 35 H 1.08997 * 109.47334 * 60.00212 * 15 14 13 36 36 H 1.07997 * 119.90473 * 0.02562 * 17 16 15 37 37 H 1.08008 * 119.70368 * 180.30205 * 18 17 16 38 38 H 1.08005 * 119.77447 * 179.75122 * 19 18 17 39 39 H 1.08008 * 122.55083 * 0.02562 * 21 20 19 40 40 H 1.07997 * 124.29903 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6412 0.0573 -2.4766 6 1 1.0799 0.9744 -2.3756 7 6 1.9931 -0.4014 -3.7284 8 7 2.6762 -1.5185 -3.8514 9 14 1.4982 0.5631 -5.2497 10 1 0.7399 1.7735 -4.8433 11 1 2.7161 0.9687 -5.9964 12 1 0.6448 -0.2866 -6.1186 13 6 2.0401 -0.7214 1.2491 14 7 1.6516 0.0372 2.4456 15 6 2.1250 -0.6275 3.6671 16 6 1.7080 0.1777 4.8709 17 6 2.6140 1.0083 5.4876 18 6 2.2344 1.7566 6.5933 19 6 0.9687 1.6704 7.0868 20 6 0.0196 0.8219 6.4778 21 6 -1.3683 0.5822 6.8385 22 6 -2.0022 -0.2769 6.0654 23 16 -0.9568 -0.8904 4.7991 24 6 0.4028 0.0740 5.3608 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 3.1263 -0.7994 -1.2058 29 1 1.6053 -1.7197 -1.2953 30 1 2.9234 -1.8414 -4.7320 31 1 3.1265 -0.7996 1.2054 32 1 1.6055 -1.7199 1.2950 33 1 1.9883 0.9871 2.3967 34 1 1.6907 -1.6252 3.7295 35 1 3.2119 -0.7054 3.6404 36 1 3.6222 1.0821 5.1076 37 1 2.9509 2.4102 7.0687 38 1 0.6888 2.2557 7.9503 39 1 -1.8441 1.0715 7.6756 40 1 -3.0346 -0.5661 6.1956 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602700462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:45 Heat of formation + Delta-G solvation = 7.562898 kcal Electronic energy + Delta-G solvation = -19656.243618 eV Core-core repulsion = 16753.479959 eV Total energy + Delta-G solvation = -2902.763659 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.60006 -38.39792 -36.50367 -35.43486 -34.06593 -31.93398 -30.21750 -28.90158 -27.43012 -25.79377 -24.56666 -23.93616 -22.55669 -21.29898 -20.77931 -18.68865 -18.46912 -17.08100 -16.61238 -16.31571 -16.30164 -15.91216 -15.73394 -15.45783 -14.88285 -14.62874 -14.35353 -14.23841 -13.83558 -13.46088 -13.30441 -13.09788 -13.05184 -12.77082 -12.62672 -12.48524 -12.22331 -12.16086 -12.11289 -11.88624 -11.49784 -11.39110 -11.09346 -10.92775 -10.53825 -10.45310 -9.45621 -9.35485 -8.59574 -8.17430 -6.26360 -0.16114 0.30439 0.70075 1.20741 1.38857 1.39741 1.40381 1.53480 2.42150 2.74056 3.16036 3.35562 3.71693 3.74416 3.98047 4.12733 4.27271 4.31014 4.37267 4.47412 4.51440 4.54398 4.57823 4.85352 4.87573 4.91476 4.95096 5.02374 5.06042 5.12340 5.28367 5.46200 5.47728 5.50087 5.51605 5.56010 5.57888 5.81022 5.89125 5.95531 6.02928 6.31456 6.44694 6.89730 7.41886 8.94867 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.026610 B = 0.003068 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.991273 B = 9123.961389 C = 9589.270647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.072 4.072 3 H 0.054 0.946 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.079 3.921 14 N -0.677 5.677 15 C 0.098 3.902 16 C -0.063 4.063 17 C -0.103 4.103 18 C -0.120 4.120 19 C -0.083 4.083 20 C -0.101 4.101 21 C -0.125 4.125 22 C -0.201 4.201 23 S 0.067 5.933 24 C -0.136 4.136 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.063 0.937 28 H -0.013 1.013 29 H -0.011 1.011 30 H 0.262 0.738 31 H 0.023 0.977 32 H 0.060 0.940 33 H 0.344 0.656 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.143 0.857 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.170 0.830 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.643 5.808 25.955 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 H 0.072 0.928 4 C -0.004 4.004 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.050 4.050 14 N -0.309 5.309 15 C -0.031 4.031 16 C -0.067 4.067 17 C -0.124 4.124 18 C -0.139 4.139 19 C -0.103 4.103 20 C -0.110 4.110 21 C -0.155 4.155 22 C -0.335 4.335 23 S 0.331 5.669 24 C -0.252 4.252 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.006 0.994 29 H 0.008 0.992 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.162 0.838 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.161 0.839 37 H 0.174 0.826 38 H 0.169 0.831 39 H 0.188 0.812 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.522 4.347 24.691 25.671 hybrid contribution 1.071 1.021 -0.230 1.497 sum -4.451 5.368 24.460 25.435 Atomic orbital electron populations 1.21462 0.94867 1.00252 1.00284 1.20999 0.96552 0.98436 0.93136 0.92753 1.19007 0.94139 0.94641 0.92650 1.21666 1.34254 1.08548 0.92089 0.92163 1.25951 0.95286 0.96113 1.02642 1.70107 1.40396 1.22948 1.24207 0.85458 0.78084 0.78890 0.78991 1.18606 1.20454 1.20573 1.21852 0.96787 0.97194 0.89126 1.60444 1.64165 1.05819 1.00437 1.20859 0.98220 0.96767 0.87251 1.19261 0.91447 0.99257 0.96785 1.21272 0.99608 0.95337 0.96197 1.21018 0.96782 0.99735 0.96414 1.21043 0.92360 0.96958 0.99912 1.19754 0.95206 0.99777 0.96256 1.21209 0.91961 1.00166 1.02163 1.25462 1.04975 1.03559 0.99470 1.84675 1.02157 1.47102 1.32964 1.22733 0.98243 1.03654 1.00560 0.94404 0.94722 0.91851 0.99423 0.99238 0.92948 0.95876 0.92195 0.83783 0.91352 0.93061 0.83891 0.82620 0.83074 0.81221 0.79384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.44 8.89 71.98 0.64 -3.80 16 2 C -0.07 -3.02 2.48 -10.79 -0.03 -3.04 16 3 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 4 C 0.03 1.77 4.45 29.85 0.13 1.91 16 5 C -0.53 -30.25 8.41 25.60 0.22 -30.03 16 6 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 7 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 8 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 9 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 10 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 C 0.08 2.78 5.07 86.30 0.44 3.22 16 14 N -0.68 -19.76 5.94 -517.92 -3.08 -22.84 16 15 C 0.10 2.49 5.60 85.56 0.48 2.96 16 16 C -0.06 -1.48 5.42 -19.66 -0.11 -1.59 16 17 C -0.10 -1.94 9.64 22.23 0.21 -1.72 16 18 C -0.12 -1.86 9.95 21.91 0.22 -1.64 16 19 C -0.08 -1.37 10.05 22.49 0.23 -1.14 16 20 C -0.10 -2.16 6.04 -20.36 -0.12 -2.28 16 21 C -0.13 -2.21 10.39 23.33 0.24 -1.97 16 22 C -0.20 -3.74 11.02 67.04 0.74 -3.01 16 23 S 0.07 1.64 22.81 -56.49 -1.29 0.35 16 24 C -0.14 -3.39 6.31 23.02 0.15 -3.25 16 25 H 0.04 1.59 6.95 -2.39 -0.02 1.58 16 26 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 2.26 7.75 -2.38 -0.02 2.24 16 28 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 29 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 30 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.34 9.55 8.72 -89.69 -0.78 8.76 16 34 H 0.07 1.86 7.99 -2.39 -0.02 1.84 16 35 H 0.05 1.18 7.99 -2.39 -0.02 1.17 16 36 H 0.14 2.15 8.02 -2.91 -0.02 2.12 16 37 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.19 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -67.48 345.95 2.08 -65.40 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.24 Total: 12.63 kcal Atomic # 6 Polarization: -48.99 SS G_CDS: 3.90 Total: -45.09 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -2.79 Total: -80.33 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.29 Total: 0.35 kcal Total: -67.48 2.08 -65.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602700462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.959 kcal (2) G-P(sol) polarization free energy of solvation -67.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds