Wall clock time and date at job start Tue Mar 31 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47562 * 2 1 4 4 C 1.53000 * 109.47123 * 120.00076 * 2 1 3 5 5 C 1.50699 * 109.47142 * 294.99567 * 4 2 1 6 6 H 1.07993 * 119.99938 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99873 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99770 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99897 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46726 * 60.00805 * 9 7 5 11 11 H 1.48498 * 109.47144 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47186 * 300.00831 * 9 7 5 13 13 C 1.53006 * 109.47130 * 239.99801 * 2 1 3 14 14 N 1.46900 * 109.46554 * 65.00076 * 13 2 1 15 15 C 1.46901 * 110.99925 * 180.02562 * 14 13 2 16 16 C 1.50701 * 109.47549 * 180.02562 * 15 14 13 17 17 C 1.37504 * 119.90813 * 260.02469 * 16 15 14 18 18 C 1.38809 * 120.18828 * 180.02562 * 17 16 15 19 19 C 1.36130 * 120.59011 * 359.74820 * 18 17 16 20 20 C 1.41137 * 120.45294 * 0.46601 * 19 18 17 21 21 C 1.45400 * 129.34510 * 179.84871 * 20 19 18 22 22 C 1.31817 * 114.89401 * 179.71588 * 21 20 19 23 23 S 1.75301 * 111.40879 * 359.97438 * 22 21 20 24 24 C 1.39775 * 118.83437 * 359.54566 * 20 19 18 25 25 H 1.09004 * 109.46904 * 300.00011 * 1 2 3 26 26 H 1.09002 * 109.46871 * 59.99641 * 1 2 3 27 27 H 1.08997 * 109.47562 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47057 * 55.00111 * 4 2 1 29 29 H 1.08996 * 109.46933 * 174.99607 * 4 2 1 30 30 H 0.97003 * 119.99508 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47135 * 305.00630 * 13 2 1 32 32 H 1.08998 * 109.47286 * 185.00153 * 13 2 1 33 33 H 1.00895 * 111.00688 * 56.04970 * 14 13 2 34 34 H 1.09002 * 109.47161 * 59.99483 * 15 14 13 35 35 H 1.08999 * 109.47164 * 300.00346 * 15 14 13 36 36 H 1.08000 * 119.90836 * 359.97212 * 17 16 15 37 37 H 1.07998 * 119.70450 * 179.97438 * 18 17 16 38 38 H 1.08000 * 119.77598 * 180.02562 * 19 18 17 39 39 H 1.08005 * 122.54840 * 359.69247 * 21 20 19 40 40 H 1.07997 * 124.29610 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0571 2.4766 6 1 1.0801 0.9741 2.3757 7 6 1.9925 -0.4023 3.7283 8 7 2.6755 -1.5194 3.8511 9 14 1.4990 0.5629 5.2496 10 1 0.0191 0.6704 5.3091 11 1 1.9939 -0.1372 6.4621 12 1 2.0921 1.9228 5.1870 13 6 2.0400 -0.7213 -1.2493 14 7 1.6513 0.0374 -2.4456 15 6 2.1246 -0.6271 -3.6672 16 6 1.7087 0.1787 -4.8709 17 6 0.6067 -0.1990 -5.6013 18 6 0.2186 0.5386 -6.7113 19 6 0.9180 1.6444 -7.0873 20 6 2.0558 2.0530 -6.3590 21 6 2.9379 3.1863 -6.5865 22 6 3.9229 3.3057 -5.7187 23 16 3.8751 2.0303 -4.5169 24 6 2.4443 1.3083 -5.2418 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6054 -1.7198 1.2951 29 1 3.1263 -0.7995 1.2055 30 1 2.9228 -1.8423 4.7317 31 1 1.6053 -1.7198 -1.2952 32 1 3.1263 -0.7996 -1.2056 33 1 1.9881 0.9873 -2.3967 34 1 1.6903 -1.6249 -3.7297 35 1 3.2115 -0.7051 -3.6406 36 1 0.0418 -1.0726 -5.3111 37 1 -0.6479 0.2346 -7.2796 38 1 0.6042 2.2088 -7.9529 39 1 2.7969 3.8774 -7.4044 40 1 4.6646 4.0902 -5.7442 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602700466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:49 Heat of formation + Delta-G solvation = 24.009386 kcal Electronic energy + Delta-G solvation = -19637.242610 eV Core-core repulsion = 16735.192124 eV Total energy + Delta-G solvation = -2902.050486 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.84014 -37.02077 -35.49926 -34.07258 -32.25060 -30.76006 -29.50093 -26.98059 -26.11171 -24.32504 -23.76345 -22.26690 -21.63767 -20.65271 -19.08449 -17.86263 -16.31769 -16.17261 -15.64630 -15.25238 -15.09820 -14.71076 -14.33330 -14.13973 -14.00066 -13.57305 -13.20640 -12.63159 -12.55622 -12.24249 -12.07075 -11.85125 -11.52475 -11.41430 -11.31525 -11.22390 -10.82431 -10.76198 -10.68703 -10.26538 -10.21716 -9.76725 -9.67066 -9.11521 -8.94342 -8.68410 -8.30116 -8.13904 -7.84510 -5.95118 -3.96094 0.57578 1.06587 1.38949 1.85350 2.10347 3.36469 3.40543 3.43313 3.52265 4.38426 4.43504 4.51198 4.69448 4.72893 5.00802 5.07550 5.15199 5.29759 5.40593 5.43735 5.61026 5.65110 5.71778 5.77232 5.86580 5.90702 6.17124 6.18166 6.27529 6.38216 6.42711 6.56932 6.69753 6.71850 7.02789 7.20721 7.21638 7.34438 7.61229 7.72270 7.88158 8.05208 8.49408 9.10057 9.67069 11.16443 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.024727 B = 0.003108 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.081734 B = 9006.884439 C = 9528.390077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.063 3.937 14 N -0.680 5.680 15 C 0.091 3.909 16 C -0.038 4.038 17 C -0.087 4.087 18 C -0.117 4.117 19 C -0.085 4.085 20 C -0.080 4.080 21 C -0.120 4.120 22 C -0.195 4.195 23 S 0.087 5.913 24 C -0.132 4.132 25 H 0.053 0.947 26 H 0.041 0.959 27 H 0.039 0.961 28 H 0.016 0.984 29 H 0.012 0.988 30 H 0.260 0.740 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.338 0.662 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.143 0.857 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.482 6.073 -24.256 25.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.311 5.311 15 C -0.038 4.038 16 C -0.043 4.043 17 C -0.109 4.109 18 C -0.137 4.137 19 C -0.105 4.105 20 C -0.088 4.088 21 C -0.150 4.150 22 C -0.329 4.329 23 S 0.351 5.649 24 C -0.248 4.248 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.156 0.844 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.161 0.839 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.046 5.385 -22.894 23.519 hybrid contribution -0.050 1.091 -0.249 1.120 sum -0.096 6.476 -23.143 24.032 Atomic orbital electron populations 1.21586 0.95679 1.00562 1.00162 1.21205 0.96055 0.98946 0.93933 0.92829 1.19111 0.95901 0.95552 0.90369 1.21206 1.34621 1.08287 0.90995 0.92612 1.25018 0.95350 0.95096 0.99074 1.69958 1.39086 1.21238 1.23455 0.86689 0.78912 0.80109 0.82479 1.20255 1.21389 1.20315 1.22201 0.97306 0.97764 0.89255 1.60609 1.63807 1.05828 1.00855 1.20954 0.97570 0.97517 0.87766 1.19259 0.94825 0.93652 0.96596 1.20974 0.95206 1.00092 0.94582 1.20705 1.00085 0.95473 0.97411 1.20651 0.93722 0.96923 0.99178 1.19300 0.97531 0.95784 0.96205 1.20926 0.95011 0.98045 1.01060 1.25099 1.03891 1.03944 0.99919 1.84441 1.26180 1.22776 1.31491 1.22637 1.01131 1.00672 1.00314 0.92775 0.93950 0.94143 0.96544 0.96927 0.93062 0.91332 0.95629 0.84414 0.89692 0.94538 0.85034 0.85476 0.85813 0.83901 0.81616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 2 C -0.08 -1.72 2.48 -90.62 -0.22 -1.95 16 3 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.54 8.41 -34.44 -0.29 -14.83 16 6 H 0.06 1.54 7.05 -52.49 -0.37 1.17 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 9 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.06 1.11 5.08 -3.82 -0.02 1.09 16 14 N -0.68 -10.40 5.94 -115.05 -0.68 -11.09 16 15 C 0.09 1.19 5.60 -4.97 -0.03 1.16 16 16 C -0.04 -0.48 5.42 -104.30 -0.57 -1.04 16 17 C -0.09 -0.94 9.64 -39.64 -0.38 -1.32 16 18 C -0.12 -1.09 9.95 -40.13 -0.40 -1.49 16 19 C -0.08 -0.81 10.05 -39.24 -0.39 -1.21 16 20 C -0.08 -0.90 6.04 -105.37 -0.64 -1.54 16 21 C -0.12 -1.14 10.39 -38.63 -0.40 -1.55 16 22 C -0.19 -1.86 11.02 28.84 0.32 -1.54 16 23 S 0.09 1.01 22.81 -107.50 -2.45 -1.44 16 24 C -0.13 -1.65 6.31 -38.42 -0.24 -1.89 16 25 H 0.05 1.15 6.95 -51.93 -0.36 0.78 16 26 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.34 5.24 8.72 -39.29 -0.34 4.89 16 34 H 0.08 1.04 7.99 -51.93 -0.41 0.62 16 35 H 0.04 0.48 7.99 -51.93 -0.41 0.07 16 36 H 0.13 1.22 8.02 -52.49 -0.42 0.80 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.14 0.98 8.06 -52.48 -0.42 0.55 16 40 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -30.98 345.95 -11.45 -42.43 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.09 Total: 0.57 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -3.16 Total: -26.09 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.05 Total: -37.58 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.45 Total: -1.44 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.98 -11.45 -42.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602700466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.441 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds