Wall clock time and date at job start Tue Mar 31 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47562 * 2 1 4 4 C 1.53000 * 109.47123 * 120.00076 * 2 1 3 5 5 C 1.50699 * 109.47142 * 294.99567 * 4 2 1 6 6 H 1.07993 * 119.99938 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99873 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99770 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99897 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46726 * 60.00805 * 9 7 5 11 11 H 1.48498 * 109.47144 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47186 * 300.00831 * 9 7 5 13 13 C 1.53006 * 109.47130 * 239.99801 * 2 1 3 14 14 N 1.46900 * 109.46554 * 65.00076 * 13 2 1 15 15 C 1.46901 * 110.99925 * 180.02562 * 14 13 2 16 16 C 1.50701 * 109.47549 * 180.02562 * 15 14 13 17 17 C 1.37504 * 119.90813 * 260.02469 * 16 15 14 18 18 C 1.38809 * 120.18828 * 180.02562 * 17 16 15 19 19 C 1.36130 * 120.59011 * 359.74820 * 18 17 16 20 20 C 1.41137 * 120.45294 * 0.46601 * 19 18 17 21 21 C 1.45400 * 129.34510 * 179.84871 * 20 19 18 22 22 C 1.31817 * 114.89401 * 179.71588 * 21 20 19 23 23 S 1.75301 * 111.40879 * 359.97438 * 22 21 20 24 24 C 1.39775 * 118.83437 * 359.54566 * 20 19 18 25 25 H 1.09004 * 109.46904 * 300.00011 * 1 2 3 26 26 H 1.09002 * 109.46871 * 59.99641 * 1 2 3 27 27 H 1.08997 * 109.47562 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47057 * 55.00111 * 4 2 1 29 29 H 1.08996 * 109.46933 * 174.99607 * 4 2 1 30 30 H 0.97003 * 119.99508 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47135 * 305.00630 * 13 2 1 32 32 H 1.08998 * 109.47286 * 185.00153 * 13 2 1 33 33 H 1.00895 * 111.00688 * 56.04970 * 14 13 2 34 34 H 1.09002 * 109.47161 * 59.99483 * 15 14 13 35 35 H 1.08999 * 109.47164 * 300.00346 * 15 14 13 36 36 H 1.08000 * 119.90836 * 359.97212 * 17 16 15 37 37 H 1.07998 * 119.70450 * 179.97438 * 18 17 16 38 38 H 1.08000 * 119.77598 * 180.02562 * 19 18 17 39 39 H 1.08005 * 122.54840 * 359.69247 * 21 20 19 40 40 H 1.07997 * 124.29610 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0571 2.4766 6 1 1.0801 0.9741 2.3757 7 6 1.9925 -0.4023 3.7283 8 7 2.6755 -1.5194 3.8511 9 14 1.4990 0.5629 5.2496 10 1 0.0191 0.6704 5.3091 11 1 1.9939 -0.1372 6.4621 12 1 2.0921 1.9228 5.1870 13 6 2.0400 -0.7213 -1.2493 14 7 1.6513 0.0374 -2.4456 15 6 2.1246 -0.6271 -3.6672 16 6 1.7087 0.1787 -4.8709 17 6 0.6067 -0.1990 -5.6013 18 6 0.2186 0.5386 -6.7113 19 6 0.9180 1.6444 -7.0873 20 6 2.0558 2.0530 -6.3590 21 6 2.9379 3.1863 -6.5865 22 6 3.9229 3.3057 -5.7187 23 16 3.8751 2.0303 -4.5169 24 6 2.4443 1.3083 -5.2418 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6054 -1.7198 1.2951 29 1 3.1263 -0.7995 1.2055 30 1 2.9228 -1.8423 4.7317 31 1 1.6053 -1.7198 -1.2952 32 1 3.1263 -0.7996 -1.2056 33 1 1.9881 0.9873 -2.3967 34 1 1.6903 -1.6249 -3.7297 35 1 3.2115 -0.7051 -3.6406 36 1 0.0418 -1.0726 -5.3111 37 1 -0.6479 0.2346 -7.2796 38 1 0.6042 2.2088 -7.9529 39 1 2.7969 3.8774 -7.4044 40 1 4.6646 4.0902 -5.7442 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602700466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:49 Heat of formation + Delta-G solvation = 7.380024 kcal Electronic energy + Delta-G solvation = -19637.963713 eV Core-core repulsion = 16735.192124 eV Total energy + Delta-G solvation = -2902.771589 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.63600 -38.42340 -36.52926 -35.47571 -34.08514 -31.93893 -30.26068 -28.90993 -27.44868 -25.82515 -24.62513 -23.91874 -22.53495 -21.47133 -20.74013 -18.70473 -18.47435 -17.02369 -16.70553 -16.58235 -16.14601 -16.01139 -15.69830 -15.49854 -14.94877 -14.63820 -14.40482 -14.27357 -13.85356 -13.37877 -13.32853 -13.14425 -13.05507 -12.75403 -12.65465 -12.55701 -12.22884 -12.17061 -12.08460 -11.95776 -11.55034 -11.47388 -11.11778 -10.95675 -10.54083 -10.52957 -9.48955 -9.39869 -8.68753 -8.17397 -6.26630 -0.19063 0.26381 0.58316 1.07763 1.35825 1.40044 1.42995 1.50666 2.42179 2.71967 3.15872 3.34348 3.67015 3.75034 3.90299 4.12063 4.23063 4.28382 4.36360 4.45993 4.49019 4.51184 4.59124 4.83200 4.86284 4.87814 4.91261 5.00465 5.01404 5.11479 5.27226 5.43102 5.44973 5.49699 5.52446 5.54902 5.57767 5.79691 5.88134 5.93401 5.99955 6.30379 6.32780 6.88818 7.41485 8.94544 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.024727 B = 0.003108 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.081734 B = 9006.884439 C = 9528.390077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 H 0.049 0.951 4 C 0.034 3.966 5 C -0.531 4.531 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.076 3.924 14 N -0.676 5.676 15 C 0.095 3.905 16 C -0.061 4.061 17 C -0.091 4.091 18 C -0.117 4.117 19 C -0.083 4.083 20 C -0.098 4.098 21 C -0.120 4.120 22 C -0.193 4.193 23 S 0.038 5.962 24 C -0.150 4.150 25 H 0.038 0.962 26 H 0.063 0.937 27 H 0.038 0.962 28 H -0.008 1.008 29 H -0.015 1.015 30 H 0.262 0.738 31 H 0.070 0.930 32 H 0.017 0.983 33 H 0.337 0.663 34 H 0.093 0.907 35 H 0.030 0.970 36 H 0.144 0.856 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.174 0.826 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.898 7.580 -26.007 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.003 4.003 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.193 1.193 13 C -0.053 4.053 14 N -0.306 5.306 15 C -0.033 4.033 16 C -0.066 4.066 17 C -0.112 4.112 18 C -0.137 4.137 19 C -0.103 4.103 20 C -0.106 4.106 21 C -0.150 4.150 22 C -0.326 4.326 23 S 0.301 5.699 24 C -0.265 4.265 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.011 0.989 29 H 0.004 0.996 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.035 0.965 33 H 0.154 0.846 34 H 0.111 0.889 35 H 0.048 0.952 36 H 0.162 0.838 37 H 0.175 0.825 38 H 0.171 0.829 39 H 0.192 0.808 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -1.471 6.902 -24.670 25.660 hybrid contribution 0.385 0.613 0.193 0.749 sum -1.087 7.515 -24.477 25.628 Atomic orbital electron populations 1.21471 0.94506 1.00548 1.00390 1.21014 0.96877 0.98235 0.93189 0.93250 1.18991 0.94045 0.94751 0.92551 1.21608 1.34555 1.08614 0.92106 0.92170 1.25952 0.95229 0.96100 1.02635 1.70096 1.40227 1.22928 1.24359 0.85560 0.78981 0.78748 0.78135 1.19160 1.20942 1.19309 1.21908 0.96628 0.97608 0.89115 1.60565 1.63706 1.05614 1.00727 1.20935 0.97248 0.97933 0.87214 1.19251 0.96145 0.94293 0.96917 1.21253 0.94582 1.00593 0.94818 1.21075 1.00771 0.94965 0.96891 1.21065 0.92728 0.96953 0.99539 1.19737 0.98459 0.96279 0.96091 1.21263 0.94234 0.97839 1.01618 1.25365 1.04735 1.03582 0.98898 1.84548 1.27096 1.24742 1.33494 1.22790 1.01323 1.01230 1.01167 0.94329 0.91758 0.94256 0.98932 0.99645 0.92911 0.91183 0.96460 0.84559 0.88874 0.95198 0.83822 0.82458 0.82857 0.80847 0.79150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 8.89 71.98 0.64 -3.77 16 2 C -0.07 -3.15 2.48 -10.79 -0.03 -3.18 16 3 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 4 C 0.03 1.84 4.45 29.85 0.13 1.97 16 5 C -0.53 -30.61 8.41 25.60 0.22 -30.40 16 6 H 0.06 3.34 7.05 -2.91 -0.02 3.32 16 7 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 8 N -0.94 -57.94 13.29 21.45 0.28 -57.66 16 9 Si 0.96 45.10 29.54 68.60 2.03 47.12 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 13 C 0.08 2.74 5.08 86.31 0.44 3.17 16 14 N -0.68 -20.60 5.94 -517.92 -3.08 -23.68 16 15 C 0.10 2.50 5.60 85.56 0.48 2.97 16 16 C -0.06 -1.48 5.42 -19.66 -0.11 -1.58 16 17 C -0.09 -1.80 9.64 22.23 0.21 -1.59 16 18 C -0.12 -1.84 9.95 21.92 0.22 -1.63 16 19 C -0.08 -1.35 10.05 22.49 0.23 -1.12 16 20 C -0.10 -2.02 6.04 -20.35 -0.12 -2.14 16 21 C -0.12 -2.01 10.39 23.34 0.24 -1.77 16 22 C -0.19 -3.40 11.02 67.04 0.74 -2.66 16 23 S 0.04 0.90 22.81 -56.49 -1.29 -0.39 16 24 C -0.15 -3.66 6.31 23.02 0.15 -3.52 16 25 H 0.04 1.61 6.95 -2.38 -0.02 1.60 16 26 H 0.06 2.24 7.75 -2.39 -0.02 2.22 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 30 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.34 10.52 8.72 -89.70 -0.78 9.73 16 34 H 0.09 2.23 7.99 -2.39 -0.02 2.21 16 35 H 0.03 0.82 7.99 -2.39 -0.02 0.80 16 36 H 0.14 2.37 8.02 -2.91 -0.02 2.35 16 37 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 39 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 40 H 0.19 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -67.61 345.95 2.08 -65.53 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.24 Total: 13.95 kcal Atomic # 6 Polarization: -48.78 SS G_CDS: 3.90 Total: -44.88 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -2.79 Total: -81.33 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -1.29 Total: -0.39 kcal Total: -67.61 2.08 -65.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602700466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.913 kcal (2) G-P(sol) polarization free energy of solvation -67.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds