Wall clock time and date at job start Tue Mar 31 2020 06:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47210 * 2 1 4 4 C 1.50703 * 109.47088 * 119.99130 * 2 1 3 5 5 H 1.07997 * 119.99854 * 120.00114 * 4 2 1 6 6 C 1.37872 * 120.00057 * 300.00708 * 4 2 1 7 7 N 1.31518 * 119.99966 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00009 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47218 * 0.02562 * 8 6 4 10 10 H 1.48510 * 109.47018 * 119.99701 * 8 6 4 11 11 H 1.48499 * 109.47313 * 239.99826 * 8 6 4 12 12 N 1.46895 * 109.47466 * 239.99506 * 2 1 3 13 13 C 1.46902 * 110.99966 * 85.00012 * 12 2 1 14 14 C 1.50700 * 109.46946 * 179.97438 * 13 12 2 15 15 C 1.39922 * 125.87591 * 95.00134 * 14 13 12 16 16 C 1.35326 * 107.92975 * 180.02562 * 15 14 13 17 17 N 1.35221 * 107.71468 * 359.97438 * 16 15 14 18 18 C 1.40180 * 126.05545 * 180.26081 * 17 16 15 19 19 C 1.38878 * 120.05460 * 179.71438 * 18 17 16 20 20 C 1.38099 * 119.98235 * 179.97438 * 19 18 17 21 21 C 1.38263 * 120.09362 * 359.97438 * 20 19 18 22 22 C 1.38479 * 120.10936 * 359.97438 * 21 20 19 23 23 F 1.35105 * 119.99382 * 180.02562 * 22 21 20 24 24 C 1.38365 * 120.01291 * 359.77922 * 22 21 20 25 25 N 1.30873 * 125.87907 * 275.02290 * 14 13 12 26 26 H 1.08998 * 109.47255 * 300.00939 * 1 2 3 27 27 H 1.09001 * 109.46952 * 60.00627 * 1 2 3 28 28 H 1.09001 * 109.46717 * 180.02562 * 1 2 3 29 29 H 0.97008 * 119.99755 * 179.97438 * 7 6 4 30 30 H 1.00898 * 111.00087 * 208.95399 * 12 2 1 31 31 H 1.09003 * 109.46937 * 60.00407 * 13 12 2 32 32 H 1.08999 * 109.47389 * 299.99814 * 13 12 2 33 33 H 1.07997 * 126.03913 * 0.02562 * 15 14 13 34 34 H 1.08004 * 126.14175 * 180.02562 * 16 15 14 35 35 H 1.07999 * 120.00467 * 0.02562 * 19 18 17 36 36 H 1.08002 * 119.95427 * 180.02562 * 20 19 18 37 37 H 1.08005 * 119.95023 * 179.97438 * 21 20 19 38 38 H 1.08007 * 120.04777 * 180.25727 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7102 1.2306 5 1 2.6533 -1.5883 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9433 0.8304 2.6033 8 14 2.3212 -1.1199 4.0081 9 1 3.1465 -2.2865 3.6041 10 1 3.1465 -0.1867 4.8166 11 1 1.1660 -1.5862 4.8162 12 7 2.0197 -0.6926 -1.1993 13 6 2.0826 0.2224 -2.3468 14 6 2.5887 -0.5218 -3.5556 15 6 1.7962 -1.1174 -4.5430 16 6 2.6214 -1.6835 -5.4540 17 7 3.8931 -1.4533 -5.0565 18 6 5.0541 -1.8677 -5.7239 19 6 6.3038 -1.5563 -5.2043 20 6 7.4465 -1.9658 -5.8628 21 6 7.3485 -2.6862 -7.0389 22 6 6.1043 -2.9998 -7.5598 23 9 6.0112 -3.7043 -8.7089 24 6 4.9564 -2.5961 -6.9011 25 7 3.8451 -0.7226 -3.8621 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 0.7086 1.1617 3.4843 30 1 2.9174 -1.1205 -1.0285 31 1 2.7590 1.0461 -2.1182 32 1 1.0872 0.6161 -2.5526 33 1 0.7167 -1.1241 -4.5729 34 1 2.3185 -2.2218 -6.3400 35 1 6.3819 -0.9947 -4.2852 36 1 8.4181 -1.7238 -5.4582 37 1 8.2437 -3.0050 -7.5522 38 1 3.9858 -2.8439 -7.3047 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:40 Heat of formation + Delta-G solvation = 64.647825 kcal Electronic energy + Delta-G solvation = -21354.188067 eV Core-core repulsion = 17919.979371 eV Total energy + Delta-G solvation = -3434.208696 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.28145 -41.56302 -39.11161 -36.05623 -33.87134 -32.38700 -31.20454 -30.33259 -29.53153 -28.22705 -25.57366 -24.73021 -23.60916 -22.59410 -20.93751 -19.87302 -19.56948 -18.71657 -16.77696 -16.58686 -16.34505 -16.12357 -16.03898 -15.27697 -14.87119 -14.61131 -14.17688 -14.07268 -13.82518 -13.57126 -13.22804 -12.79886 -12.56075 -12.35985 -12.17364 -11.81570 -11.68641 -11.20078 -10.90165 -10.80003 -10.65786 -10.34365 -10.24742 -10.12477 -9.93468 -9.28477 -9.12726 -8.82969 -8.48400 -8.18570 -7.31920 -6.03197 -4.09275 0.47797 0.75131 2.01223 2.21612 2.82589 3.29059 3.29210 3.37028 3.41855 3.84389 4.20296 4.40701 4.51332 4.56297 4.62079 4.77120 4.94161 5.15239 5.28052 5.31029 5.51876 5.58682 5.65094 5.72215 5.85903 5.92546 5.94974 6.12695 6.25138 6.35333 6.67046 6.86995 7.03227 7.12897 7.20590 7.47295 7.68577 7.78042 7.88053 8.25935 8.34951 8.62836 9.00416 9.56654 11.03244 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.025725 B = 0.002886 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.191970 B = 9699.678476 C =10411.356873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.004 0.996 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.283 1.283 12 N -0.681 5.681 13 C 0.135 3.865 14 C 0.111 3.889 15 C -0.231 4.231 16 C 0.041 3.959 17 N -0.336 5.336 18 C 0.207 3.793 19 C -0.134 4.134 20 C -0.063 4.063 21 C -0.173 4.173 22 C 0.127 3.873 23 F -0.135 7.135 24 C -0.188 4.188 25 N -0.285 5.285 26 H 0.081 0.919 27 H 0.005 0.995 28 H 0.032 0.968 29 H 0.260 0.740 30 H 0.335 0.665 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.156 0.844 34 H 0.175 0.825 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.739 -4.795 -20.389 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.021 0.979 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.313 5.313 13 C 0.003 3.997 14 C -0.057 4.057 15 C -0.259 4.259 16 C -0.099 4.099 17 N -0.111 5.111 18 C 0.113 3.887 19 C -0.155 4.155 20 C -0.082 4.082 21 C -0.192 4.192 22 C 0.107 3.893 23 F -0.113 7.113 24 C -0.209 4.209 25 N -0.104 5.104 26 H 0.100 0.900 27 H 0.025 0.975 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.152 0.848 31 H 0.057 0.943 32 H 0.106 0.894 33 H 0.174 0.826 34 H 0.192 0.808 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.157 0.843 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.244 -4.770 -20.147 22.674 hybrid contribution 0.064 -0.276 0.545 0.614 sum 9.309 -5.046 -19.602 22.279 Atomic orbital electron populations 1.21729 0.97690 0.99476 0.99471 1.19148 0.92723 0.92438 0.85238 0.97871 1.21285 1.31396 1.12533 0.90372 0.92152 1.24908 0.95041 0.94999 0.99037 1.69907 1.36690 1.22889 1.23390 0.86462 0.78613 0.79633 0.82822 1.19751 1.21083 1.20957 1.60787 1.32548 1.32503 1.05496 1.20377 0.99815 0.92762 0.86713 1.22820 0.89818 0.96353 0.96750 1.21587 1.01085 1.06774 0.96459 1.22558 0.83678 1.02370 1.01319 1.45785 1.03472 1.42812 1.19008 1.17179 0.84998 0.95465 0.91035 1.21054 0.89889 1.02469 1.02053 1.20926 0.98742 0.95093 0.93400 1.21177 0.96431 1.03077 0.98536 1.17211 0.93661 0.94802 0.83603 1.91525 1.97077 1.76078 1.46640 1.20623 0.99292 1.04424 0.96610 1.77486 1.20650 1.14957 0.97323 0.90021 0.97548 0.94862 0.92960 0.84785 0.94303 0.89430 0.82604 0.80763 0.83582 0.83982 0.84272 0.84047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.19 37.16 0.34 -2.73 16 2 C 0.21 5.34 2.60 -68.86 -0.18 5.16 16 3 H 0.00 0.10 7.80 -51.93 -0.40 -0.31 16 4 C -0.52 -14.24 8.59 -34.44 -0.30 -14.54 16 5 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.31 11.32 55.43 0.63 -24.68 16 8 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.68 -14.75 6.29 -109.22 -0.69 -15.44 16 13 C 0.13 2.47 6.04 -4.97 -0.03 2.44 16 14 C 0.11 1.86 6.73 -82.37 -0.55 1.30 16 15 C -0.23 -3.23 10.74 -39.99 -0.43 -3.66 16 16 C 0.04 0.50 10.80 -17.10 -0.18 0.32 16 17 N -0.34 -4.73 3.80 -10.70 -0.04 -4.77 16 18 C 0.21 2.50 6.69 -83.60 -0.56 1.94 16 19 C -0.13 -1.48 9.66 -39.40 -0.38 -1.86 16 20 C -0.06 -0.52 10.04 -39.62 -0.40 -0.92 16 21 C -0.17 -1.39 10.02 -39.48 -0.40 -1.79 16 22 C 0.13 1.20 7.30 -39.45 -0.29 0.91 16 23 F -0.13 -1.31 17.27 2.25 0.04 -1.27 16 24 C -0.19 -1.88 9.43 -39.34 -0.37 -2.25 16 25 N -0.28 -4.79 11.87 33.69 0.40 -4.39 16 26 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 27 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.33 7.41 8.22 -39.29 -0.32 7.09 16 31 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 32 H 0.09 1.52 7.44 -51.93 -0.39 1.13 16 33 H 0.16 1.88 8.06 -52.49 -0.42 1.45 16 34 H 0.18 1.42 7.04 -52.48 -0.37 1.05 16 35 H 0.15 1.72 7.70 -52.49 -0.40 1.32 16 36 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 38 H 0.14 1.15 6.74 -52.48 -0.35 0.80 16 LS Contribution 329.29 15.07 4.96 4.96 Total: -1.00 -30.34 329.29 -8.13 -38.47 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.59 Total: 4.88 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -3.82 Total: -14.06 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.30 Total: -49.28 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.34 -8.13 -38.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.116 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds