Wall clock time and date at job start Tue Mar 31 2020 06:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47210 * 2 1 4 4 C 1.50703 * 109.47088 * 119.99130 * 2 1 3 5 5 H 1.07997 * 119.99854 * 120.00114 * 4 2 1 6 6 C 1.37872 * 120.00057 * 300.00708 * 4 2 1 7 7 N 1.31518 * 119.99966 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00009 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47218 * 0.02562 * 8 6 4 10 10 H 1.48510 * 109.47018 * 119.99701 * 8 6 4 11 11 H 1.48499 * 109.47313 * 239.99826 * 8 6 4 12 12 N 1.46895 * 109.47466 * 239.99506 * 2 1 3 13 13 C 1.46902 * 110.99966 * 85.00012 * 12 2 1 14 14 C 1.50700 * 109.46946 * 179.97438 * 13 12 2 15 15 C 1.39922 * 125.87591 * 95.00134 * 14 13 12 16 16 C 1.35326 * 107.92975 * 180.02562 * 15 14 13 17 17 N 1.35221 * 107.71468 * 359.97438 * 16 15 14 18 18 C 1.40180 * 126.05545 * 180.26081 * 17 16 15 19 19 C 1.38878 * 120.05460 * 179.71438 * 18 17 16 20 20 C 1.38099 * 119.98235 * 179.97438 * 19 18 17 21 21 C 1.38263 * 120.09362 * 359.97438 * 20 19 18 22 22 C 1.38479 * 120.10936 * 359.97438 * 21 20 19 23 23 F 1.35105 * 119.99382 * 180.02562 * 22 21 20 24 24 C 1.38365 * 120.01291 * 359.77922 * 22 21 20 25 25 N 1.30873 * 125.87907 * 275.02290 * 14 13 12 26 26 H 1.08998 * 109.47255 * 300.00939 * 1 2 3 27 27 H 1.09001 * 109.46952 * 60.00627 * 1 2 3 28 28 H 1.09001 * 109.46717 * 180.02562 * 1 2 3 29 29 H 0.97008 * 119.99755 * 179.97438 * 7 6 4 30 30 H 1.00898 * 111.00087 * 208.95399 * 12 2 1 31 31 H 1.09003 * 109.46937 * 60.00407 * 13 12 2 32 32 H 1.08999 * 109.47389 * 299.99814 * 13 12 2 33 33 H 1.07997 * 126.03913 * 0.02562 * 15 14 13 34 34 H 1.08004 * 126.14175 * 180.02562 * 16 15 14 35 35 H 1.07999 * 120.00467 * 0.02562 * 19 18 17 36 36 H 1.08002 * 119.95427 * 180.02562 * 20 19 18 37 37 H 1.08005 * 119.95023 * 179.97438 * 21 20 19 38 38 H 1.08007 * 120.04777 * 180.25727 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7102 1.2306 5 1 2.6533 -1.5883 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9433 0.8304 2.6033 8 14 2.3212 -1.1199 4.0081 9 1 3.1465 -2.2865 3.6041 10 1 3.1465 -0.1867 4.8166 11 1 1.1660 -1.5862 4.8162 12 7 2.0197 -0.6926 -1.1993 13 6 2.0826 0.2224 -2.3468 14 6 2.5887 -0.5218 -3.5556 15 6 1.7962 -1.1174 -4.5430 16 6 2.6214 -1.6835 -5.4540 17 7 3.8931 -1.4533 -5.0565 18 6 5.0541 -1.8677 -5.7239 19 6 6.3038 -1.5563 -5.2043 20 6 7.4465 -1.9658 -5.8628 21 6 7.3485 -2.6862 -7.0389 22 6 6.1043 -2.9998 -7.5598 23 9 6.0112 -3.7043 -8.7089 24 6 4.9564 -2.5961 -6.9011 25 7 3.8451 -0.7226 -3.8621 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 0.7086 1.1617 3.4843 30 1 2.9174 -1.1205 -1.0285 31 1 2.7590 1.0461 -2.1182 32 1 1.0872 0.6161 -2.5526 33 1 0.7167 -1.1241 -4.5729 34 1 2.3185 -2.2218 -6.3400 35 1 6.3819 -0.9947 -4.2852 36 1 8.4181 -1.7238 -5.4582 37 1 8.2437 -3.0050 -7.5522 38 1 3.9858 -2.8439 -7.3047 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602861742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:39 Heat of formation + Delta-G solvation = 46.774242 kcal Electronic energy + Delta-G solvation = -21354.963124 eV Core-core repulsion = 17919.979371 eV Total energy + Delta-G solvation = -3434.983753 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.01035 -42.60666 -39.91758 -37.81409 -35.20504 -34.05060 -32.01474 -31.59132 -30.72531 -29.60565 -27.45632 -26.38487 -24.43847 -23.53798 -21.89597 -21.76132 -20.80739 -19.59574 -18.55493 -17.39343 -17.25139 -17.02817 -16.88304 -16.78535 -16.29934 -15.91670 -15.65513 -15.29279 -14.95420 -14.75237 -14.40730 -14.10559 -13.83668 -13.47514 -13.37715 -13.11861 -12.99662 -12.76597 -12.68507 -12.41294 -12.23753 -12.18511 -11.98596 -11.69530 -11.21929 -10.87617 -10.58033 -10.18247 -10.00792 -9.18529 -9.07926 -8.13985 -6.27844 -0.34825 0.01535 1.05184 1.25337 1.41006 1.42680 1.54579 1.67967 2.41804 2.51944 3.09606 3.14694 3.32452 3.60951 3.77831 3.83515 3.86653 3.94914 4.10640 4.28877 4.41315 4.56806 4.66563 4.73431 4.84887 4.88418 4.94864 4.99158 5.11278 5.17026 5.21890 5.23656 5.47237 5.52747 5.65097 5.66505 5.86021 6.12047 6.22861 6.40186 6.57022 6.70145 6.93534 7.42182 8.91853 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.025725 B = 0.002886 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.191970 B = 9699.678476 C =10411.356873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.216 3.784 3 H -0.026 1.026 4 C -0.539 4.539 5 H 0.055 0.945 6 C 0.015 3.985 7 N -0.915 5.915 8 Si 0.962 3.038 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.278 1.278 12 N -0.676 5.676 13 C 0.141 3.859 14 C 0.089 3.911 15 C -0.248 4.248 16 C 0.056 3.944 17 N -0.335 5.335 18 C 0.174 3.826 19 C -0.149 4.149 20 C -0.056 4.056 21 C -0.159 4.159 22 C 0.119 3.881 23 F -0.135 7.135 24 C -0.181 4.181 25 N -0.318 5.318 26 H 0.058 0.942 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.264 0.736 30 H 0.329 0.671 31 H 0.026 0.974 32 H 0.097 0.903 33 H 0.173 0.827 34 H 0.219 0.781 35 H 0.129 0.871 36 H 0.171 0.829 37 H 0.168 0.832 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.722 -6.303 -22.123 24.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 H -0.008 1.008 4 C -0.578 4.578 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.787 3.213 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.203 1.203 12 N -0.308 5.308 13 C 0.010 3.990 14 C -0.078 4.078 15 C -0.276 4.276 16 C -0.085 4.085 17 N -0.111 5.111 18 C 0.081 3.919 19 C -0.170 4.170 20 C -0.074 4.074 21 C -0.178 4.178 22 C 0.099 3.901 23 F -0.114 7.114 24 C -0.203 4.203 25 N -0.139 5.139 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.146 0.854 31 H 0.045 0.955 32 H 0.115 0.885 33 H 0.190 0.810 34 H 0.236 0.764 35 H 0.147 0.853 36 H 0.189 0.811 37 H 0.186 0.814 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 10.240 -6.278 -21.899 24.977 hybrid contribution -0.108 0.166 0.930 0.951 sum 10.132 -6.112 -20.969 24.078 Atomic orbital electron populations 1.21546 0.97069 0.99106 0.99482 1.18966 0.93164 0.90856 0.86227 1.00830 1.21584 1.31766 1.12682 0.91744 0.92715 1.25695 0.95138 0.95680 1.01906 1.70022 1.37335 1.23905 1.24198 0.85448 0.78176 0.78547 0.79084 1.19401 1.20513 1.20318 1.60710 1.32131 1.32795 1.05121 1.20267 1.00181 0.92121 0.86411 1.22557 0.90625 0.97669 0.96972 1.21806 1.02070 1.07406 0.96343 1.23226 0.82533 1.00954 1.01799 1.45930 1.04845 1.42076 1.18233 1.17470 0.84652 0.97488 0.92255 1.21149 0.90859 1.02953 1.01997 1.21219 0.98995 0.94138 0.93091 1.21539 0.97047 1.01316 0.97889 1.17355 0.94072 0.95019 0.83671 1.91530 1.97104 1.76106 1.46654 1.20762 1.00554 1.03335 0.95605 1.77375 1.20960 1.16354 0.99190 0.92325 0.95162 0.95224 0.92723 0.85420 0.95541 0.88520 0.80970 0.76416 0.85290 0.81145 0.81424 0.82251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.64 9.19 71.98 0.66 -4.98 16 2 C 0.22 11.21 2.60 44.17 0.11 11.32 16 3 H -0.03 -1.47 7.80 -2.38 -0.02 -1.49 16 4 C -0.54 -30.34 8.59 25.60 0.22 -30.12 16 5 H 0.05 3.07 7.62 -2.91 -0.02 3.04 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -52.88 11.32 21.45 0.24 -52.63 16 8 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 N -0.68 -30.11 6.29 -499.45 -3.14 -33.25 16 13 C 0.14 5.33 6.04 85.56 0.52 5.85 16 14 C 0.09 3.02 6.73 43.11 0.29 3.31 16 15 C -0.25 -6.71 10.74 22.01 0.24 -6.48 16 16 C 0.06 1.26 10.80 83.50 0.90 2.17 16 17 N -0.34 -9.23 3.80 -187.78 -0.71 -9.94 16 18 C 0.17 4.01 6.69 38.09 0.25 4.26 16 19 C -0.15 -3.20 9.66 22.39 0.22 -2.98 16 20 C -0.06 -0.80 10.04 22.24 0.22 -0.57 16 21 C -0.16 -2.05 10.02 22.33 0.22 -1.83 16 22 C 0.12 1.92 7.30 22.36 0.16 2.08 16 23 F -0.14 -2.26 17.27 44.97 0.78 -1.48 16 24 C -0.18 -3.20 9.43 22.43 0.21 -2.99 16 25 N -0.32 -10.92 11.87 -47.34 -0.56 -11.49 16 26 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 27 H 0.03 1.30 7.45 -2.39 -0.02 1.28 16 28 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 30 H 0.33 15.13 8.22 -89.70 -0.74 14.40 16 31 H 0.03 1.05 8.06 -2.39 -0.02 1.03 16 32 H 0.10 3.40 7.44 -2.39 -0.02 3.38 16 33 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 34 H 0.22 2.73 7.04 -2.91 -0.02 2.71 16 35 H 0.13 3.16 7.70 -2.91 -0.02 3.14 16 36 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 37 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 38 H 0.16 2.10 6.74 -2.91 -0.02 2.08 16 Total: -1.00 -66.71 329.29 3.66 -63.05 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.35 Total: 19.36 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 4.68 Total: -19.66 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -4.17 Total: -107.32 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.78 Total: -1.48 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -66.71 3.66 -63.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.825 kcal (2) G-P(sol) polarization free energy of solvation -66.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds