Wall clock time and date at job start Tue Mar 31 2020 06:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47111 * 2 1 4 4 H 1.09003 * 109.47385 * 304.99539 * 3 2 1 5 5 C 1.50699 * 109.47447 * 64.99734 * 3 2 1 6 6 C 1.38248 * 119.97421 * 59.87604 * 5 3 2 7 7 C 1.38191 * 120.02949 * 179.76591 * 6 5 3 8 8 C 1.38460 * 119.97177 * 0.51034 * 7 6 5 9 9 F 1.35102 * 120.02926 * 179.76366 * 8 7 6 10 10 C 1.38461 * 119.94876 * 359.74428 * 8 7 6 11 11 C 1.38194 * 119.97334 * 0.02562 * 10 8 7 12 12 N 1.46506 * 109.47175 * 185.00083 * 3 2 1 13 13 C 1.35306 * 125.86473 * 325.03523 * 12 3 2 14 14 C 1.35352 * 106.17255 * 180.02562 * 13 12 3 15 15 C 1.50702 * 126.74992 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47044 * 124.99062 * 15 14 13 17 17 H 1.08004 * 119.99658 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00389 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99781 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00357 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47326 * 89.99867 * 20 18 16 22 22 H 1.48497 * 109.47291 * 210.00212 * 20 18 16 23 23 H 1.48507 * 109.46832 * 330.00006 * 20 18 16 24 24 N 1.33769 * 106.49734 * 0.02562 * 14 13 12 25 25 N 1.28635 * 108.88678 * 359.97438 * 24 14 13 26 26 H 1.08994 * 109.47059 * 60.00201 * 1 2 3 27 27 H 1.09005 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47031 * 300.00199 * 1 2 3 29 29 H 1.08998 * 109.47031 * 239.99800 * 2 1 3 30 30 H 1.09001 * 109.46799 * 119.99549 * 2 1 3 31 31 H 1.08006 * 119.98696 * 0.02669 * 6 5 3 32 32 H 1.08002 * 120.01795 * 180.25016 * 7 6 5 33 33 H 1.08005 * 120.01161 * 179.97438 * 10 8 7 34 34 H 1.08001 * 119.98433 * 180.02562 * 11 10 8 35 35 H 1.08001 * 126.91593 * 359.97438 * 13 12 3 36 36 H 1.08999 * 109.47381 * 244.98641 * 15 14 13 37 37 H 1.09003 * 109.47209 * 4.99163 * 15 14 13 38 38 H 0.96996 * 120.00107 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6413 2.1163 1.2876 6 6 2.0749 1.6062 2.4972 7 6 1.7140 2.2260 3.6784 8 6 0.9090 3.3522 3.6507 9 9 0.5515 3.9563 4.8051 10 6 0.4710 3.8592 2.4390 11 6 0.8371 3.2404 1.2588 12 7 3.5001 1.4442 -0.1204 13 6 4.3407 0.5287 0.4143 14 6 5.5898 0.9117 0.0606 15 6 6.8798 0.2168 0.4128 16 6 7.6483 -0.0849 -0.8478 17 1 7.2429 0.1980 -1.8081 18 6 8.8685 -0.7228 -0.7755 19 7 9.3619 -1.0676 0.3938 20 14 9.8208 -1.0974 -2.3382 21 1 10.7160 0.0435 -2.6579 22 1 10.6338 -2.3242 -2.1404 23 1 8.8695 -1.3093 -3.4587 24 7 5.4539 2.0285 -0.6632 25 7 4.2036 2.3174 -0.7523 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.6995 0.7253 2.5188 32 1 2.0562 1.8297 4.6230 33 1 -0.1573 4.7374 2.4162 34 1 0.4959 3.6359 0.3135 35 1 4.0697 -0.3337 1.0053 36 1 7.4767 0.8631 1.0563 37 1 6.6600 -0.7139 0.9359 38 1 10.2200 -1.5168 0.4448 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603229041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:37 Heat of formation + Delta-G solvation = 66.017406 kcal Electronic energy + Delta-G solvation = -22118.503062 eV Core-core repulsion = 18684.353755 eV Total energy + Delta-G solvation = -3434.149306 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.17343 -42.62413 -39.70249 -36.21516 -33.54844 -32.14798 -31.54539 -30.95160 -30.57061 -27.62044 -26.50375 -23.85456 -23.23060 -22.85797 -22.20626 -20.33214 -20.13369 -18.02804 -17.13573 -16.91789 -16.29290 -16.04210 -15.85337 -15.08809 -14.89411 -14.56278 -14.25455 -14.15438 -13.83098 -13.65993 -13.18229 -12.69154 -12.54875 -12.44693 -12.35652 -12.08368 -11.73352 -11.51475 -11.31333 -11.15841 -10.97383 -10.72913 -10.64540 -10.10778 -9.69523 -9.46544 -9.42512 -9.29749 -8.95783 -8.43478 -8.12585 -5.98671 -3.99137 0.70148 0.90648 2.21249 2.70129 3.31092 3.37286 3.41980 3.44993 3.52699 3.93065 4.11907 4.25562 4.43857 4.51860 4.56406 4.65310 4.86374 4.93805 4.98503 5.13906 5.22927 5.32186 5.38613 5.53911 5.55975 5.64734 5.70818 5.78205 5.81241 5.86206 5.90382 6.07192 6.10534 6.33681 6.52343 7.12651 7.18230 7.52787 7.62589 7.99221 8.37751 9.04335 9.31531 9.63729 11.12482 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.023321 B = 0.003585 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.340927 B = 7808.530901 C = 8313.061616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.194 3.806 4 H 0.115 0.885 5 C -0.111 4.111 6 C -0.068 4.068 7 C -0.151 4.151 8 C 0.104 3.896 9 F -0.139 7.139 10 C -0.155 4.155 11 C -0.068 4.068 12 N -0.298 5.298 13 C -0.083 4.083 14 C 0.037 3.963 15 C 0.092 3.908 16 C -0.503 4.503 17 H 0.059 0.941 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 N -0.261 5.261 25 N -0.107 5.107 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.178 0.822 36 H 0.039 0.961 37 H 0.036 0.964 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.638 3.669 5.108 23.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C 0.091 3.909 4 H 0.133 0.867 5 C -0.113 4.113 6 C -0.086 4.086 7 C -0.170 4.170 8 C 0.085 3.915 9 F -0.118 7.118 10 C -0.174 4.174 11 C -0.087 4.087 12 N -0.093 5.093 13 C -0.231 4.231 14 C -0.100 4.100 15 C 0.053 3.947 16 C -0.542 4.542 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.538 5.538 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.199 1.199 24 N -0.128 5.128 25 N -0.084 5.084 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.195 0.805 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.524 4.898 4.366 23.460 hybrid contribution 0.457 -1.089 0.135 1.189 sum -22.067 3.809 4.501 22.841 Atomic orbital electron populations 1.21710 0.93666 1.02675 1.02460 1.21934 0.97420 0.93266 1.04382 1.20338 0.75586 0.98473 0.96476 0.86678 1.19902 0.99942 0.97080 0.94368 1.20948 0.97319 0.99447 0.90879 1.21157 0.99833 0.95938 1.00065 1.17783 0.98379 0.93622 0.81738 1.91510 1.90214 1.82546 1.47520 1.21116 1.03199 1.02005 0.91036 1.20890 0.96101 0.93507 0.98184 1.47266 1.07387 1.18683 1.35968 1.23213 0.90504 1.00167 1.09208 1.23011 0.96924 0.93520 0.96567 1.17727 0.85339 0.94024 0.97590 1.21043 1.03353 1.37143 0.92616 0.92288 1.24967 0.97388 0.95822 0.96210 1.69944 1.19226 1.41275 1.23372 0.86516 0.79912 0.77675 0.83471 1.20558 1.21304 1.19937 1.75077 1.06286 1.14692 1.16708 1.78212 0.98942 1.14780 1.16512 0.92174 0.91620 0.92062 0.89914 0.90285 0.84684 0.84314 0.84413 0.84547 0.80496 0.94347 0.94596 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.73 37.16 0.36 -0.59 16 2 C -0.13 -1.14 4.82 -26.73 -0.13 -1.27 16 3 C 0.19 2.12 2.95 -69.08 -0.20 1.92 16 4 H 0.12 1.13 7.87 -51.93 -0.41 0.72 16 5 C -0.11 -1.14 3.96 -104.62 -0.41 -1.56 16 6 C -0.07 -0.70 8.77 -39.60 -0.35 -1.05 16 7 C -0.15 -1.52 10.03 -39.52 -0.40 -1.92 16 8 C 0.10 1.08 7.30 -39.42 -0.29 0.79 16 9 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 10 C -0.15 -1.40 10.03 -39.52 -0.40 -1.79 16 11 C -0.07 -0.61 9.67 -39.60 -0.38 -0.99 16 12 N -0.30 -4.81 3.18 -55.89 -0.18 -4.99 16 13 C -0.08 -1.46 9.53 -17.05 -0.16 -1.62 16 14 C 0.04 0.84 6.44 -82.78 -0.53 0.30 16 15 C 0.09 2.39 5.55 -29.03 -0.16 2.23 16 16 C -0.50 -14.48 9.09 -34.44 -0.31 -14.80 16 17 H 0.06 1.74 7.74 -52.48 -0.41 1.33 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 20 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 N -0.26 -6.21 12.40 33.29 0.41 -5.80 16 25 N -0.11 -2.16 13.17 60.35 0.79 -1.37 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.39 7.38 -51.93 -0.38 0.01 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.65 6.51 -51.93 -0.34 0.31 16 31 H 0.14 1.34 6.51 -52.48 -0.34 0.99 16 32 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.14 0.92 7.94 -52.49 -0.42 0.50 16 35 H 0.18 2.47 7.23 -52.49 -0.38 2.09 16 36 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.04 0.92 8.12 -51.93 -0.42 0.50 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 329.79 15.07 4.97 4.97 Total: -1.00 -33.44 329.79 -6.48 -39.91 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -4.77 Total: -3.63 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -3.46 Total: -18.82 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 1.77 Total: -38.01 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.44 -6.48 -39.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603229041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.930 kcal (2) G-P(sol) polarization free energy of solvation -33.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds