Wall clock time and date at job start Tue Mar 31 2020 06:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47111 * 2 1 4 4 H 1.09003 * 109.47385 * 304.99539 * 3 2 1 5 5 C 1.50699 * 109.47447 * 64.99734 * 3 2 1 6 6 C 1.38248 * 119.97421 * 59.87604 * 5 3 2 7 7 C 1.38191 * 120.02949 * 179.76591 * 6 5 3 8 8 C 1.38460 * 119.97177 * 0.51034 * 7 6 5 9 9 F 1.35102 * 120.02926 * 179.76366 * 8 7 6 10 10 C 1.38461 * 119.94876 * 359.74428 * 8 7 6 11 11 C 1.38194 * 119.97334 * 0.02562 * 10 8 7 12 12 N 1.46506 * 109.47175 * 185.00083 * 3 2 1 13 13 C 1.35306 * 125.86473 * 325.03523 * 12 3 2 14 14 C 1.35352 * 106.17255 * 180.02562 * 13 12 3 15 15 C 1.50702 * 126.74992 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47044 * 124.99062 * 15 14 13 17 17 H 1.08004 * 119.99658 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00389 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99781 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00357 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47326 * 89.99867 * 20 18 16 22 22 H 1.48497 * 109.47291 * 210.00212 * 20 18 16 23 23 H 1.48507 * 109.46832 * 330.00006 * 20 18 16 24 24 N 1.33769 * 106.49734 * 0.02562 * 14 13 12 25 25 N 1.28635 * 108.88678 * 359.97438 * 24 14 13 26 26 H 1.08994 * 109.47059 * 60.00201 * 1 2 3 27 27 H 1.09005 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47031 * 300.00199 * 1 2 3 29 29 H 1.08998 * 109.47031 * 239.99800 * 2 1 3 30 30 H 1.09001 * 109.46799 * 119.99549 * 2 1 3 31 31 H 1.08006 * 119.98696 * 0.02669 * 6 5 3 32 32 H 1.08002 * 120.01795 * 180.25016 * 7 6 5 33 33 H 1.08005 * 120.01161 * 179.97438 * 10 8 7 34 34 H 1.08001 * 119.98433 * 180.02562 * 11 10 8 35 35 H 1.08001 * 126.91593 * 359.97438 * 13 12 3 36 36 H 1.08999 * 109.47381 * 244.98641 * 15 14 13 37 37 H 1.09003 * 109.47209 * 4.99163 * 15 14 13 38 38 H 0.96996 * 120.00107 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6413 2.1163 1.2876 6 6 2.0749 1.6062 2.4972 7 6 1.7140 2.2260 3.6784 8 6 0.9090 3.3522 3.6507 9 9 0.5515 3.9563 4.8051 10 6 0.4710 3.8592 2.4390 11 6 0.8371 3.2404 1.2588 12 7 3.5001 1.4442 -0.1204 13 6 4.3407 0.5287 0.4143 14 6 5.5898 0.9117 0.0606 15 6 6.8798 0.2168 0.4128 16 6 7.6483 -0.0849 -0.8478 17 1 7.2429 0.1980 -1.8081 18 6 8.8685 -0.7228 -0.7755 19 7 9.3619 -1.0676 0.3938 20 14 9.8208 -1.0974 -2.3382 21 1 10.7160 0.0435 -2.6579 22 1 10.6338 -2.3242 -2.1404 23 1 8.8695 -1.3093 -3.4587 24 7 5.4539 2.0285 -0.6632 25 7 4.2036 2.3174 -0.7523 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.6995 0.7253 2.5188 32 1 2.0562 1.8297 4.6230 33 1 -0.1573 4.7374 2.4162 34 1 0.4959 3.6359 0.3135 35 1 4.0697 -0.3337 1.0053 36 1 7.4767 0.8631 1.0563 37 1 6.6600 -0.7139 0.9359 38 1 10.2200 -1.5168 0.4448 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603229041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:37 Heat of formation + Delta-G solvation = 46.486715 kcal Electronic energy + Delta-G solvation = -22119.349976 eV Core-core repulsion = 18684.353755 eV Total energy + Delta-G solvation = -3434.996221 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.98103 -44.11567 -40.51340 -37.17686 -35.51218 -33.57909 -32.66812 -32.20729 -31.36857 -29.46601 -27.49564 -25.52448 -24.34120 -23.61709 -23.40646 -21.85882 -21.23450 -18.81975 -18.54231 -18.21239 -17.77220 -17.10748 -16.67095 -16.54491 -16.23090 -15.75572 -15.47575 -15.05960 -14.59218 -14.52669 -14.38695 -14.25401 -13.80488 -13.69409 -13.33559 -13.15624 -13.01636 -12.84681 -12.61732 -12.50230 -12.24660 -12.02368 -11.88447 -11.78938 -11.65967 -11.34265 -10.87048 -10.57556 -10.15910 -9.84596 -9.75683 -8.17791 -6.26280 -0.09755 0.18317 0.77301 1.41051 1.43225 1.53173 1.56336 1.78560 2.45382 2.52731 3.15173 3.16983 3.27508 3.41306 3.65725 3.80025 3.86159 3.93337 4.18949 4.24268 4.29512 4.33451 4.47193 4.50486 4.67581 4.82106 4.85919 4.87989 5.05813 5.08814 5.11938 5.15531 5.28239 5.34179 5.38156 5.46033 5.55890 5.77911 5.78503 5.85309 6.23659 6.82044 7.40400 7.73308 8.93168 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.023321 B = 0.003585 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.340927 B = 7808.530901 C = 8313.061616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C 0.185 3.815 4 H 0.131 0.869 5 C -0.119 4.119 6 C -0.078 4.078 7 C -0.159 4.159 8 C 0.090 3.910 9 F -0.146 7.146 10 C -0.153 4.153 11 C -0.065 4.065 12 N -0.276 5.276 13 C -0.049 4.049 14 C -0.005 4.005 15 C 0.102 3.898 16 C -0.523 4.523 17 H 0.045 0.955 18 C 0.009 3.991 19 N -0.927 5.927 20 Si 0.961 3.039 21 H -0.277 1.277 22 H -0.274 1.274 23 H -0.270 1.270 24 N -0.309 5.309 25 N -0.117 5.117 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.148 0.852 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.216 0.784 36 H 0.006 0.994 37 H 0.034 0.966 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.687 3.270 4.540 25.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C 0.086 3.914 4 H 0.149 0.851 5 C -0.121 4.121 6 C -0.097 4.097 7 C -0.178 4.178 8 C 0.070 3.930 9 F -0.125 7.125 10 C -0.171 4.171 11 C -0.084 4.084 12 N -0.071 5.071 13 C -0.199 4.199 14 C -0.143 4.143 15 C 0.064 3.936 16 C -0.561 4.561 17 H 0.063 0.937 18 C -0.189 4.189 19 N -0.567 5.567 20 Si 0.786 3.214 21 H -0.203 1.203 22 H -0.199 1.199 23 H -0.195 1.195 24 N -0.175 5.175 25 N -0.095 5.095 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.156 0.844 32 H 0.166 0.834 33 H 0.177 0.823 34 H 0.179 0.821 35 H 0.233 0.767 36 H 0.024 0.976 37 H 0.052 0.948 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.611 4.518 3.793 25.308 hybrid contribution 0.945 -0.930 0.381 1.380 sum -23.666 3.588 4.175 24.297 Atomic orbital electron populations 1.21681 0.91629 1.03527 1.03045 1.21974 0.99031 0.91371 1.04323 1.20889 0.72224 1.00650 0.97676 0.85088 1.19886 1.00759 0.97758 0.93682 1.21056 0.97684 0.99806 0.91130 1.21305 0.99879 0.96046 1.00528 1.18032 0.98899 0.93977 0.82059 1.91492 1.90328 1.82677 1.47995 1.21386 1.02873 1.02422 0.90445 1.21177 0.95303 0.92653 0.99247 1.47687 1.09215 1.16810 1.33421 1.23507 0.88896 1.00316 1.07181 1.22631 0.97505 0.94742 0.99438 1.17382 0.86684 0.93523 0.96053 1.21280 1.04292 1.37526 0.93033 0.93693 1.25776 0.98200 0.95470 0.99466 1.70037 1.19738 1.41678 1.25267 0.85510 0.78489 0.77844 0.79560 1.20276 1.19915 1.19496 1.74982 1.08284 1.15857 1.18353 1.78076 0.98152 1.15783 1.17499 0.91267 0.90673 0.91795 0.90629 0.89710 0.84412 0.83436 0.82307 0.82096 0.76706 0.97578 0.94760 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.73 71.98 0.70 -0.66 16 2 C -0.13 -1.86 4.82 30.59 0.15 -1.72 16 3 C 0.19 3.58 2.95 44.24 0.13 3.71 16 4 H 0.13 2.16 7.87 -2.39 -0.02 2.14 16 5 C -0.12 -2.15 3.96 -19.86 -0.08 -2.23 16 6 C -0.08 -1.49 8.77 22.26 0.20 -1.29 16 7 C -0.16 -2.99 10.03 22.31 0.22 -2.76 16 8 C 0.09 1.71 7.30 22.38 0.16 1.87 16 9 F -0.15 -3.05 17.27 44.97 0.78 -2.27 16 10 C -0.15 -2.38 10.03 22.31 0.22 -2.15 16 11 C -0.07 -0.98 9.67 22.26 0.22 -0.76 16 12 N -0.28 -8.51 3.18 -330.74 -1.05 -9.56 16 13 C -0.05 -1.67 9.53 83.49 0.80 -0.88 16 14 C -0.01 -0.24 6.44 41.60 0.27 0.03 16 15 C 0.10 5.52 5.55 29.10 0.16 5.68 16 16 C -0.52 -30.91 9.09 25.60 0.23 -30.68 16 17 H 0.04 2.72 7.74 -2.91 -0.02 2.70 16 18 C 0.01 0.53 5.46 84.65 0.46 0.99 16 19 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 20 Si 0.96 45.58 29.54 68.60 2.03 47.61 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 24 N -0.31 -15.01 12.40 -48.60 -0.60 -15.61 16 25 N -0.12 -4.71 13.17 37.02 0.49 -4.22 16 26 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.06 0.61 7.38 -2.39 -0.02 0.59 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.14 6.51 -2.39 -0.02 1.13 16 31 H 0.14 2.46 6.51 -2.91 -0.02 2.44 16 32 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 34 H 0.16 1.57 7.94 -2.91 -0.02 1.54 16 35 H 0.22 5.47 7.23 -2.91 -0.02 5.45 16 36 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.03 1.81 8.12 -2.39 -0.02 1.79 16 38 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -74.03 329.79 6.83 -67.20 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 1.07 Total: 3.01 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: 3.84 Total: -30.85 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -0.88 Total: -84.69 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.78 Total: -2.27 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -74.03 6.83 -67.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603229041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.687 kcal (2) G-P(sol) polarization free energy of solvation -74.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds