Wall clock time and date at job start Tue Mar 31 2020 06:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47536 * 2 1 4 4 C 1.36941 * 119.99782 * 264.08053 * 3 2 1 5 5 H 1.08001 * 119.99894 * 189.36517 * 4 3 2 6 6 C 1.38811 * 119.99902 * 9.36031 * 4 3 2 7 7 N 1.31621 * 120.00125 * 23.28316 * 6 4 3 8 8 Si 1.86793 * 119.99731 * 203.28246 * 6 4 3 9 9 H 1.48501 * 109.47253 * 84.98572 * 8 6 4 10 10 H 1.48509 * 109.47112 * 204.98017 * 8 6 4 11 11 H 1.48501 * 109.47675 * 324.98150 * 8 6 4 12 12 C 1.46500 * 120.00008 * 84.07241 * 3 2 1 13 13 C 1.50698 * 109.47591 * 270.00298 * 12 3 2 14 14 C 1.39917 * 125.87800 * 94.99672 * 13 12 3 15 15 C 1.35317 * 107.93010 * 179.97438 * 14 13 12 16 16 N 1.35217 * 107.71615 * 0.02562 * 15 14 13 17 17 C 1.40188 * 126.05531 * 179.97438 * 16 15 14 18 18 C 1.38869 * 120.05378 * 180.02562 * 17 16 15 19 19 C 1.38109 * 119.98420 * 179.97438 * 18 17 16 20 20 C 1.38261 * 120.09143 * 359.97438 * 19 18 17 21 21 C 1.38483 * 120.10631 * 0.02643 * 20 19 18 22 22 F 1.35103 * 119.98978 * 179.97438 * 21 20 19 23 23 C 1.38363 * 120.01819 * 359.74018 * 21 20 19 24 24 N 1.30880 * 125.87514 * 274.69475 * 13 12 3 25 25 H 1.09000 * 109.46889 * 300.00776 * 1 2 3 26 26 H 1.09000 * 109.46362 * 60.00029 * 1 2 3 27 27 H 1.08995 * 109.46937 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47375 * 239.99199 * 2 1 3 29 29 H 1.09005 * 109.46666 * 119.99662 * 2 1 3 30 30 H 0.97000 * 120.00004 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.46770 * 150.00509 * 12 3 2 32 32 H 1.08993 * 109.47239 * 30.00724 * 12 3 2 33 33 H 1.07999 * 126.03634 * 0.02562 * 14 13 12 34 34 H 1.08007 * 126.14175 * 179.97438 * 15 14 13 35 35 H 1.07996 * 120.00752 * 0.02562 * 18 17 16 36 36 H 1.08005 * 119.95120 * 180.02562 * 19 18 17 37 37 H 1.07997 * 119.94818 * 180.02562 * 20 19 18 38 38 H 1.07996 * 120.04701 * 180.25364 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3621 1.9859 -1.1796 5 1 2.8619 2.9432 -1.1702 6 6 2.0680 1.3683 -2.3875 7 7 1.0979 0.4812 -2.4542 8 14 3.0491 1.7963 -3.9184 9 1 4.2844 0.9731 -3.9609 10 1 2.2288 1.5204 -5.1252 11 1 3.4141 3.2354 -3.8863 12 6 2.1392 2.1154 1.2619 13 6 0.8482 2.8384 1.5481 14 6 -0.1967 2.3648 2.3490 15 6 -1.1733 3.3014 2.3566 16 7 -0.7602 4.3327 1.5857 17 6 -1.4776 5.5092 1.3280 18 6 -0.9317 6.4922 0.5130 19 6 -1.6400 7.6505 0.2596 20 6 -2.8925 7.8329 0.8159 21 6 -3.4405 6.8551 1.6292 22 9 -4.6644 7.0360 2.1719 23 6 -2.7369 5.6909 1.8821 24 7 0.5139 4.0197 1.0945 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.8922 0.0500 -3.2983 31 1 2.9512 2.8385 1.1853 32 1 2.3508 1.4159 2.0705 33 1 -0.2195 1.4190 2.8700 34 1 -2.1141 3.2366 2.8830 35 1 0.0460 6.3507 0.0768 36 1 -1.2151 8.4145 -0.3747 37 1 -3.4445 8.7393 0.6158 38 1 -3.1655 4.9262 2.5129 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604541040.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:02 Heat of formation + Delta-G solvation = 97.149383 kcal Electronic energy + Delta-G solvation = -22441.459577 eV Core-core repulsion = 19008.660254 eV Total energy + Delta-G solvation = -3432.799323 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.06531 -41.10881 -38.80254 -36.08663 -33.41220 -31.35710 -30.89879 -30.12142 -29.14945 -28.72542 -26.08587 -23.59986 -23.21500 -22.31839 -20.68230 -20.45617 -19.13291 -18.37517 -16.68602 -16.33085 -16.21210 -15.96596 -15.80021 -15.05617 -14.66860 -14.27210 -13.82396 -13.66233 -13.54621 -13.21302 -12.95864 -12.73703 -12.31007 -12.04293 -11.82545 -11.56277 -11.45694 -11.29493 -10.83370 -10.71613 -10.45284 -10.16265 -10.07006 -9.83577 -9.59259 -9.35256 -9.00582 -8.68260 -8.38229 -7.76234 -6.93648 -5.75390 -3.07837 0.79185 1.01492 2.40891 2.65396 3.29820 3.41784 3.48146 3.49836 3.59188 4.09833 4.50579 4.53387 4.76778 4.89031 4.95703 5.09890 5.24557 5.39255 5.45273 5.60182 5.79139 5.85101 5.90760 6.07377 6.13479 6.20576 6.27785 6.48789 6.60756 6.62798 6.65037 6.94485 7.08760 7.12122 7.20530 7.44870 7.70321 7.80557 8.15375 8.22124 8.36852 9.24010 9.83886 10.27870 11.27428 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.018371 B = 0.004443 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.776824 B = 6300.001367 C = 7088.990639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.165 3.835 3 N -0.578 5.578 4 C -0.242 4.242 5 H 0.077 0.923 6 C -0.003 4.003 7 N -0.896 5.896 8 Si 0.901 3.099 9 H -0.288 1.288 10 H -0.294 1.294 11 H -0.281 1.281 12 C 0.215 3.785 13 C 0.092 3.908 14 C -0.236 4.236 15 C 0.031 3.969 16 N -0.343 5.343 17 C 0.216 3.784 18 C -0.136 4.136 19 C -0.063 4.063 20 C -0.179 4.179 21 C 0.126 3.874 22 F -0.137 7.137 23 C -0.193 4.193 24 N -0.276 5.276 25 H 0.022 0.978 26 H 0.086 0.914 27 H 0.016 0.984 28 H 0.090 0.910 29 H 0.005 0.995 30 H 0.251 0.749 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.147 0.853 34 H 0.167 0.833 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.438 9.207 9.704 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.041 3.959 3 N -0.298 5.298 4 C -0.371 4.371 5 H 0.095 0.905 6 C -0.200 4.200 7 N -0.542 5.542 8 Si 0.732 3.268 9 H -0.215 1.215 10 H -0.220 1.220 11 H -0.207 1.207 12 C 0.084 3.916 13 C -0.081 4.081 14 C -0.264 4.264 15 C -0.108 4.108 16 N -0.117 5.117 17 C 0.121 3.879 18 C -0.156 4.156 19 C -0.082 4.082 20 C -0.199 4.199 21 C 0.106 3.894 22 F -0.116 7.116 23 C -0.215 4.215 24 N -0.094 5.094 25 H 0.040 0.960 26 H 0.105 0.895 27 H 0.035 0.965 28 H 0.108 0.892 29 H 0.024 0.976 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.165 0.835 34 H 0.184 0.816 35 H 0.164 0.836 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.190 10.095 8.855 14.786 hybrid contribution -0.607 -0.554 -0.288 0.871 sum -6.797 9.541 8.567 14.513 Atomic orbital electron populations 1.22416 0.99189 0.98062 1.01647 1.20908 0.92612 0.84016 0.98397 1.44534 1.74100 1.09670 1.01493 1.19354 1.30121 1.04339 0.83299 0.90540 1.24775 0.97810 0.99974 0.97445 1.70170 1.27630 1.31510 1.24846 0.86295 0.79939 0.77973 0.82613 1.21479 1.22023 1.20672 1.19558 0.89073 0.93202 0.89756 1.24480 1.00450 0.91026 0.92131 1.21507 0.95287 1.01600 1.08001 1.22391 1.00663 0.89542 0.98226 1.46014 1.14724 1.12876 1.38134 1.17210 0.89754 0.85224 0.95701 1.21054 1.02306 0.92884 0.99363 1.20895 0.93059 0.96734 0.97531 1.21096 0.97720 1.00032 1.01034 1.17208 0.81086 0.94786 0.96359 1.91504 1.40493 1.95448 1.84159 1.20603 0.94893 0.99263 1.06774 1.77580 0.92504 1.17776 1.21568 0.95953 0.89548 0.96453 0.89201 0.97639 0.93831 0.91812 0.91677 0.83534 0.81575 0.83591 0.84222 0.84548 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.57 37.16 0.36 -3.21 16 2 C 0.17 3.90 5.64 -4.04 -0.02 3.88 16 3 N -0.58 -14.00 2.52 -174.61 -0.44 -14.45 16 4 C -0.24 -6.49 9.71 -15.06 -0.15 -6.64 16 5 H 0.08 2.06 7.91 -52.49 -0.42 1.65 16 6 C 0.00 -0.07 4.93 -17.43 -0.09 -0.16 16 7 N -0.90 -25.09 8.49 55.49 0.47 -24.62 16 8 Si 0.90 21.70 29.61 -169.99 -5.03 16.66 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.21 4.35 6.26 -5.19 -0.03 4.32 16 13 C 0.09 1.85 6.37 -82.37 -0.52 1.32 16 14 C -0.24 -4.08 8.73 -39.99 -0.35 -4.43 16 15 C 0.03 0.50 10.80 -17.10 -0.18 0.31 16 16 N -0.34 -6.15 3.80 -10.71 -0.04 -6.19 16 17 C 0.22 3.37 6.69 -83.60 -0.56 2.81 16 18 C -0.14 -1.96 9.66 -39.40 -0.38 -2.34 16 19 C -0.06 -0.71 10.04 -39.62 -0.40 -1.11 16 20 C -0.18 -1.93 10.02 -39.48 -0.40 -2.32 16 21 C 0.13 1.53 7.30 -39.45 -0.29 1.24 16 22 F -0.14 -1.67 17.27 2.25 0.04 -1.63 16 23 C -0.19 -2.55 9.43 -39.34 -0.37 -2.92 16 24 N -0.28 -5.76 11.87 33.69 0.40 -5.36 16 25 H 0.02 0.47 5.38 -51.93 -0.28 0.19 16 26 H 0.09 2.35 6.28 -51.93 -0.33 2.02 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 2.37 5.87 -51.93 -0.30 2.06 16 29 H 0.01 0.11 7.98 -51.93 -0.41 -0.30 16 30 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.06 1.27 8.03 -51.93 -0.42 0.85 16 32 H 0.07 1.14 7.95 -51.93 -0.41 0.73 16 33 H 0.15 2.22 7.86 -52.49 -0.41 1.80 16 34 H 0.17 1.97 7.04 -52.48 -0.37 1.60 16 35 H 0.15 2.28 7.69 -52.49 -0.40 1.88 16 36 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 37 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.14 1.58 6.74 -52.49 -0.35 1.23 16 LS Contribution 321.33 15.07 4.84 4.84 Total: -1.00 -30.24 321.33 -7.66 -37.90 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -4.51 Total: 2.08 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -3.38 Total: -9.24 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.39 Total: -50.62 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.24 -7.66 -37.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604541040.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.052 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds