Wall clock time and date at job start Tue Mar 31 2020 06:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47536 * 2 1 4 4 C 1.36941 * 119.99782 * 264.08053 * 3 2 1 5 5 H 1.08001 * 119.99894 * 189.36517 * 4 3 2 6 6 C 1.38811 * 119.99902 * 9.36031 * 4 3 2 7 7 N 1.31621 * 120.00125 * 23.28316 * 6 4 3 8 8 Si 1.86793 * 119.99731 * 203.28246 * 6 4 3 9 9 H 1.48501 * 109.47253 * 84.98572 * 8 6 4 10 10 H 1.48509 * 109.47112 * 204.98017 * 8 6 4 11 11 H 1.48501 * 109.47675 * 324.98150 * 8 6 4 12 12 C 1.46500 * 120.00008 * 84.07241 * 3 2 1 13 13 C 1.50698 * 109.47591 * 270.00298 * 12 3 2 14 14 C 1.39917 * 125.87800 * 94.99672 * 13 12 3 15 15 C 1.35317 * 107.93010 * 179.97438 * 14 13 12 16 16 N 1.35217 * 107.71615 * 0.02562 * 15 14 13 17 17 C 1.40188 * 126.05531 * 179.97438 * 16 15 14 18 18 C 1.38869 * 120.05378 * 180.02562 * 17 16 15 19 19 C 1.38109 * 119.98420 * 179.97438 * 18 17 16 20 20 C 1.38261 * 120.09143 * 359.97438 * 19 18 17 21 21 C 1.38483 * 120.10631 * 0.02643 * 20 19 18 22 22 F 1.35103 * 119.98978 * 179.97438 * 21 20 19 23 23 C 1.38363 * 120.01819 * 359.74018 * 21 20 19 24 24 N 1.30880 * 125.87514 * 274.69475 * 13 12 3 25 25 H 1.09000 * 109.46889 * 300.00776 * 1 2 3 26 26 H 1.09000 * 109.46362 * 60.00029 * 1 2 3 27 27 H 1.08995 * 109.46937 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47375 * 239.99199 * 2 1 3 29 29 H 1.09005 * 109.46666 * 119.99662 * 2 1 3 30 30 H 0.97000 * 120.00004 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.46770 * 150.00509 * 12 3 2 32 32 H 1.08993 * 109.47239 * 30.00724 * 12 3 2 33 33 H 1.07999 * 126.03634 * 0.02562 * 14 13 12 34 34 H 1.08007 * 126.14175 * 179.97438 * 15 14 13 35 35 H 1.07996 * 120.00752 * 0.02562 * 18 17 16 36 36 H 1.08005 * 119.95120 * 180.02562 * 19 18 17 37 37 H 1.07997 * 119.94818 * 180.02562 * 20 19 18 38 38 H 1.07996 * 120.04701 * 180.25364 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3621 1.9859 -1.1796 5 1 2.8619 2.9432 -1.1702 6 6 2.0680 1.3683 -2.3875 7 7 1.0979 0.4812 -2.4542 8 14 3.0491 1.7963 -3.9184 9 1 4.2844 0.9731 -3.9609 10 1 2.2288 1.5204 -5.1252 11 1 3.4141 3.2354 -3.8863 12 6 2.1392 2.1154 1.2619 13 6 0.8482 2.8384 1.5481 14 6 -0.1967 2.3648 2.3490 15 6 -1.1733 3.3014 2.3566 16 7 -0.7602 4.3327 1.5857 17 6 -1.4776 5.5092 1.3280 18 6 -0.9317 6.4922 0.5130 19 6 -1.6400 7.6505 0.2596 20 6 -2.8925 7.8329 0.8159 21 6 -3.4405 6.8551 1.6292 22 9 -4.6644 7.0360 2.1719 23 6 -2.7369 5.6909 1.8821 24 7 0.5139 4.0197 1.0945 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.8922 0.0500 -3.2983 31 1 2.9512 2.8385 1.1853 32 1 2.3508 1.4159 2.0705 33 1 -0.2195 1.4190 2.8700 34 1 -2.1141 3.2366 2.8830 35 1 0.0460 6.3507 0.0768 36 1 -1.2151 8.4145 -0.3747 37 1 -3.4445 8.7393 0.6158 38 1 -3.1655 4.9262 2.5129 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604541040.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:01 Heat of formation + Delta-G solvation = 81.560325 kcal Electronic energy + Delta-G solvation = -22442.135569 eV Core-core repulsion = 19008.660254 eV Total energy + Delta-G solvation = -3433.475315 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.01402 -42.42064 -39.86924 -37.87802 -34.74220 -33.16230 -31.97768 -31.67028 -30.64285 -30.09549 -27.74239 -25.30810 -24.37236 -23.55685 -22.39194 -21.75081 -20.57795 -19.51110 -18.60630 -17.36371 -17.28496 -17.02067 -16.87625 -16.75006 -16.07669 -15.64132 -15.47489 -15.04714 -14.90453 -14.66061 -14.23864 -14.09869 -13.64836 -13.47459 -13.37474 -13.08993 -12.94953 -12.71709 -12.48831 -12.40050 -12.32476 -11.92243 -11.75702 -11.42363 -11.33562 -10.95744 -10.35763 -10.05393 -9.96912 -9.01872 -8.84978 -7.78853 -5.12413 -0.27551 0.02455 1.19934 1.43148 1.48143 1.49939 1.56089 1.89416 2.54819 2.57369 3.11274 3.29154 3.48682 3.79749 3.81280 3.83782 3.89675 4.03686 4.19967 4.38834 4.50894 4.70710 4.79030 4.80488 4.87897 4.95423 4.97224 5.06946 5.13476 5.22934 5.25460 5.30706 5.33472 5.63538 5.64927 5.77382 5.85454 6.20810 6.25286 6.37776 6.82998 7.23390 7.92212 8.30640 9.21706 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.018371 B = 0.004443 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.776824 B = 6300.001367 C = 7088.990639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.169 3.831 3 N -0.593 5.593 4 C -0.247 4.247 5 H 0.066 0.934 6 C -0.050 4.050 7 N -0.917 5.917 8 Si 0.956 3.044 9 H -0.284 1.284 10 H -0.300 1.300 11 H -0.279 1.279 12 C 0.214 3.786 13 C 0.074 3.926 14 C -0.252 4.252 15 C 0.041 3.959 16 N -0.346 5.346 17 C 0.180 3.820 18 C -0.154 4.154 19 C -0.055 4.055 20 C -0.162 4.162 21 C 0.121 3.879 22 F -0.135 7.135 23 C -0.188 4.188 24 N -0.318 5.318 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.030 0.970 28 H 0.058 0.942 29 H 0.035 0.965 30 H 0.244 0.756 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.169 0.831 34 H 0.210 0.790 35 H 0.123 0.877 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.982 10.503 11.009 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.044 3.956 3 N -0.314 5.314 4 C -0.377 4.377 5 H 0.083 0.917 6 C -0.245 4.245 7 N -0.564 5.564 8 Si 0.785 3.215 9 H -0.211 1.211 10 H -0.227 1.227 11 H -0.205 1.205 12 C 0.085 3.915 13 C -0.098 4.098 14 C -0.280 4.280 15 C -0.099 4.099 16 N -0.121 5.121 17 C 0.086 3.914 18 C -0.175 4.175 19 C -0.073 4.073 20 C -0.181 4.181 21 C 0.101 3.899 22 F -0.113 7.113 23 C -0.210 4.210 24 N -0.138 5.138 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.186 0.814 34 H 0.226 0.774 35 H 0.141 0.859 36 H 0.189 0.811 37 H 0.188 0.812 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.728 11.425 10.182 17.145 hybrid contribution -0.235 -0.745 -0.583 0.975 sum -7.963 10.680 9.599 16.420 Atomic orbital electron populations 1.22192 0.98931 0.98425 1.00234 1.20784 0.92778 0.83854 0.98171 1.44551 1.74745 1.10267 1.01858 1.19444 1.29721 1.03824 0.84680 0.91657 1.25358 0.98794 1.00724 0.99623 1.70344 1.28647 1.32700 1.24683 0.85449 0.78667 0.77672 0.79683 1.21059 1.22686 1.20493 1.19615 0.89257 0.93586 0.89011 1.24304 1.00656 0.91435 0.93362 1.21743 0.94845 1.02989 1.08436 1.23081 1.01695 0.88184 0.96927 1.46108 1.13970 1.13996 1.38046 1.17532 0.90963 0.85093 0.97803 1.21120 1.02036 0.94355 0.99955 1.21209 0.92920 0.96004 0.97190 1.21495 0.97157 1.00513 0.98919 1.17333 0.81153 0.94854 0.96604 1.91518 1.40268 1.95390 1.84153 1.20736 0.93834 1.00104 1.06284 1.77452 0.94786 1.18795 1.22781 0.94309 0.93805 0.95103 0.92383 0.94679 0.94644 0.92462 0.88688 0.81395 0.77387 0.85873 0.81143 0.81201 0.82674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.39 9.57 71.98 0.69 -5.70 16 2 C 0.17 7.96 5.64 86.38 0.49 8.45 16 3 N -0.59 -29.06 2.52 -706.34 -1.78 -30.85 16 4 C -0.25 -13.59 9.71 84.03 0.82 -12.77 16 5 H 0.07 3.65 7.91 -2.91 -0.02 3.63 16 6 C -0.05 -2.80 4.93 84.86 0.42 -2.39 16 7 N -0.92 -52.90 8.49 21.65 0.18 -52.71 16 8 Si 0.96 45.80 29.61 68.60 2.03 47.83 16 9 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 10 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 C 0.21 8.69 6.26 85.63 0.54 9.23 16 13 C 0.07 2.96 6.37 43.11 0.27 3.23 16 14 C -0.25 -8.34 8.73 22.00 0.19 -8.14 16 15 C 0.04 1.24 10.80 83.50 0.90 2.14 16 16 N -0.35 -12.26 3.80 -187.78 -0.71 -12.97 16 17 C 0.18 5.45 6.69 38.08 0.25 5.70 16 18 C -0.15 -4.41 9.66 22.39 0.22 -4.19 16 19 C -0.05 -1.10 10.04 22.24 0.22 -0.87 16 20 C -0.16 -2.90 10.02 22.33 0.22 -2.67 16 21 C 0.12 2.58 7.30 22.36 0.16 2.74 16 22 F -0.13 -2.83 17.27 44.97 0.78 -2.05 16 23 C -0.19 -4.53 9.43 22.43 0.21 -4.32 16 24 N -0.32 -13.57 11.87 -47.34 -0.56 -14.13 16 25 H 0.04 1.61 5.38 -2.39 -0.01 1.60 16 26 H 0.04 2.41 6.28 -2.39 -0.01 2.39 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 3.12 5.87 -2.39 -0.01 3.10 16 29 H 0.04 1.43 7.98 -2.38 -0.02 1.41 16 30 H 0.24 13.87 8.31 -92.71 -0.77 13.10 16 31 H 0.06 2.33 8.03 -2.39 -0.02 2.32 16 32 H 0.10 3.20 7.95 -2.39 -0.02 3.18 16 33 H 0.17 4.64 7.86 -2.91 -0.02 4.62 16 34 H 0.21 4.19 7.04 -2.91 -0.02 4.17 16 35 H 0.12 4.04 7.69 -2.91 -0.02 4.02 16 36 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.16 3.08 6.74 -2.91 -0.02 3.06 16 Total: -1.00 -67.87 321.33 6.62 -61.26 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 1.08 Total: 13.19 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 5.61 Total: -9.56 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -2.87 Total: -110.66 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -67.87 6.62 -61.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604541040.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.816 kcal (2) G-P(sol) polarization free energy of solvation -67.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds